jgi.p|Nanoce1779_2|667432, mRNA_1506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667432
Unique NamemRNA_1506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1270
Alignment locationscaffold_1:800461..802654 +

Link to JBrowse

Properties
Property NameValue
TranscriptId667518
TrackFilteredModels2
ProteinId667432
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:800461..802654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667432gene_1506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667432mRNA_1506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1506CDS_1506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1506 ID=mRNA_1506|Name=jgi.p|Nanoce1779_2|667432|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
AAACGATTGAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAG
GCAAGCAGCCCTCAACAGTCCATCCCCCCCTTGCCACTTCATCAGCCATG
GAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAATCG
GTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACTGCT
TTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGCCCC
GTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGACGT
AGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACGTCT
TCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGCTTA
CCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCTGGA
GAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCAGGA
AGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAGATT
GCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAAACT
TAATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACCGCA
AGAATAAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGGCCAC
GCCATCCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTCCCCA
TCAATACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAGCAGC
AGCAGTACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAGCAAG
TCCCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGC
CTCCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAG
GAGGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACC
CCATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTC
TCGCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCTTGG
CCGTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGT
CGTTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGG
CGCGAAGCAACAACACCGCGACCAACAGACTGACAGATCTGGCAGCAGCA
GCAGCAGCCACAAAAATTAG
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protein sequence of jgi.p|Nanoce1779_2|667432

>mRNA_1506-protein ID=mRNA_1506-protein|Name=jgi.p|Nanoce1779_2|667432|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MEEAGEEEEGVLYVHCNRCQQSLSSFYKSSCGHCFCVDCATTHFAKDPCC
PVCGLRLSQKHFRGPFDVGISAGEPVEAAMYKNVFTSNRLDEVLQKALLC
LPAVEDVINLVTTQLYLENQRSQILREKVERKLRKARGDLKLTVQEARSK
IAILSSQLTEAEAWKRKLNDELSTAKQEVYEVHRKNKSMEQMLARLRNDG
HAIPAALPLPSPASTPPHQYQHLRQQPQRSQQQQQQYYPPPSPRISASSS
KSPSGLQFPQQQLLHRPASAARTISPHHPGEGGGGGGDGGRGFQNSLVQP
TPSRSMSAGSSNGSISLSRSLSPHHYHHHRGGGLAVGVGVGGTGACSPAG
GRSSHASSSSPFGGRSFGAKQQHRDQQTDRSGSSSSSHKN*
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mRNA from alignment at scaffold_1:800461..802654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1506 ID=mRNA_1506|Name=jgi.p|Nanoce1779_2|667432|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp|location=Sequence derived from alignment at scaffold_1:800461..802654+ (Nannochloropsis oceanica)
AAACGATTGAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAG GTCGGAAGTGACTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTC GTTGTACGAGCTTTGAATTCGCTGGGCTATGTGTAGAGTGTCTGGGGTGG TATTACTGGGGGGGTACGCCCAGCTATAGAGTGGGCCGCTCCAGTGCTTC CTCCTCCTTCCCCCTCCTCTTCCTCCTCCTTCCCCTTCTCCTCCGCCTCC TGTACCTCCTTCTGGACCTTTTTTACACGACACTACTACACAGGCAAGCA GCCCTCAACAGTCCATCCCCCCCTTGCCACTTCATCAGCCATGGAAGAAG CCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAATCGGTGCCAG CAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACTGCTTTTGCGT GGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGCCCCGTCTGTG GCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGACGTAGGCATC TCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACGTCTTCACTTC CAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGCTTACCAGCGG TCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCTGGAGAATCAA CGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCAGGAAGGCACG GGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAGATTGCCATCC TTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAAACTTAGTACG TAGAGGGAGGGGGGAAGGGATGGTGAGGAGCGAGGGAAGGCGATATTTGT GTGTATGAGGAAGACGTAGGAAAGGTTCTTCATAACGAGTTTTCATTCAT CCCTCTCTTCCTCCCTCCCCTCCTTCCTTCTTTCCTCGGCATAGATGACG AGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACCGCAAGAATAAG TCCATGGAGCAGGTAAGGGGGCGAGAAATTGGGAGAGAGAGACAAAGTTA AATCCCGTGGGTGTCCTCATCTATGCTCCTCCTCGCTTGGCACCGCAATC TCCTCCTCCTTCTCCTCCTCCTCCTTCTTCTCCTTTTTCCTTCTTTGCCT CATCTCCTCCCTCCCCCCTCTCCTTCCCCCTTGCCTTGCCCAGATGCTTG CACGTCTTCGCAACGACGGCCACGCCATCCCTGCCGCCCTTCCACTCCCC AGCCCGGCCTCGACACCTCCCCATCAATACCAACACCTCCGCCAGCAACC GCAGCGATCGCAGCAGCAGCAGCAGCAGTACTACCCCCCTCCTTCCCCAC GTATCAGCGCCAGCAGCAGCAAGGTAAGTGGGGAAATGCACAGAGCAAAT GTCATTCACTCCTCCCTCCTTCCCGCCACTTCTTCTCAATTCGCCCCTCC CTCCCTCCTTTCCTACCTACCTACATCCTCACCTCAGTCCCCCAGTGGGC TCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGCCTCCGCCGCCCGC ACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAGGAGGAGGAGATGG AGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACCCCATCTCGGAGTA TGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTCTCGCTCTCTGTCG CCGCATCATTATCATCATCATCGTGGGGGGGGCTTGGCCGTCGGTGTAGG GGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGTCGTTCCTCCCACG CGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGGCGCGGTAAGTGAT TACAGAGTGCCTTATTGAGGGAGGGAGAGACGGAGGGAGGAAGGGGAAAA GAGAAGGAGGGAGGAATGCTTTCTTTTCTTGCTCCTCTCTGTAGGTACTC CTCTTTGTAGAAGGTCTTCTTCCGTACTGGAGGGGAAGAAATGGAGAGAG GGGGGGGGAAGGACGAGAGGGGGGGAGGGAGGGCGAGATGTACCCTCGTA AGGCTGAGATTTACAACTACAACTACAGAAGCAACAACACCGCGACCAAC AGACTGACAGATCTGGCAGCAGCAGCAGCAGCCACAAAAATTAG
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Coding sequence (CDS) from alignment at scaffold_1:800461..802654+

>mRNA_1506 ID=mRNA_1506|Name=jgi.p|Nanoce1779_2|667432|organism=Nannochloropsis oceanica|type=CDS|length=5865bp|location=Sequence derived from alignment at scaffold_1:800461..802654+ (Nannochloropsis oceanica)
ATGGAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAA
TCGGTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACT
GCTTTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGC
CCCGTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGA
CGTAGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACG
TCTTCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGC
TTACCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCT
GGAGAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCA
GGAAGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAG
ATTGCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAA
ACTTAATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACC
GCAAGAATAAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGGC
CACGCCATCCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTCC
CCATCAATACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAGC
AGCAGCAGTACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAGC
AAGTCCCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCC
CGCCTCCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCG
GAGGAGGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCT
ACCCCATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATT
GTCTCGCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCT
TGGCCGTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGG
GGTCGTTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTT
TGGCGCGAAGCAACAACACCGCGACCAACAGACTGACAGATCTGGCAGCA
GCAGCAGCAGCCACAAAAATTAGATGGAAGAAGCCGGCGAGGAGGAAGAG
GGCGTACTATACGTCCACTGCAATCGGTGCCAGCAGAGCCTCTCCTCCTT
CTACAAATCCTCTTGTGGGCACTGCTTTTGCGTGGACTGTGCCACCACTC
ATTTCGCTAAAGACCCCTGCTGCCCCGTCTGTGGCCTTCGCCTCTCCCAA
AAGCACTTCCGGGGACCCTTCGACGTAGGCATCTCTGCAGGCGAGCCCGT
GGAAGCGGCCATGTACAAGAACGTCTTCACTTCCAATCGATTGGATGAGG
TTCTGCAAAAGGCCTTATTGTGCTTACCAGCGGTCGAAGACGTCATCAAC
CTCGTTACCACCCAGTTGTACCTGGAGAATCAACGCAGTCAGATCCTGCG
GGAGAAGGTGGAGCGGAAGCTCAGGAAGGCACGGGGGGATCTGAAGCTCA
CGGTGCAGGAGGCCAGGAGTAAGATTGCCATCCTTTCCTCCCAGCTTACA
GAGGCAGAGGCTTGGAAACGCAAACTTAATGACGAGCTATCCACGGCCAA
GCAGGAGGTGTATGAGGTCCACCGCAAGAATAAGTCCATGGAGCAGATGC
TTGCACGTCTTCGCAACGACGGCCACGCCATCCCTGCCGCCCTTCCACTC
CCCAGCCCGGCCTCGACACCTCCCCATCAATACCAACACCTCCGCCAGCA
ACCGCAGCGATCGCAGCAGCAGCAGCAGCAGTACTACCCCCCTCCTTCCC
CACGTATCAGCGCCAGCAGCAGCAAGTCCCCCAGTGGGCTCCAATTCCCG
CAGCAGCAGCTGCTGCATCGTCCCGCCTCCGCCGCCCGCACTATCTCCCC
TCACCACCCAGGAGAAGGAGGCGGAGGAGGAGGAGATGGAGGGAGGGGGT
TCCAAAATTCTTTGGTTCAGCCTACCCCATCTCGGAGTATGAGTGCTGGC
AGCAGCAACGGCAGCATTTCATTGTCTCGCTCTCTGTCGCCGCATCATTA
TCATCATCATCGTGGGGGGGGCTTGGCCGTCGGTGTAGGGGTGGGGGGGA
CGGGCGCTTGTTCACCCGCCGGGGGTCGTTCCTCCCACGCGTCCTCCTCC
TCGCCTTTTGGAGGGAGATCTTTTGGCGCGAAGCAACAACACCGCGACCA
ACAGACTGACAGATCTGGCAGCAGCAGCAGCAGCCACAAAAATTAGATGG
AAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAATCGG
TGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACTGCTT
TTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGCCCCG
TCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGACGTA
GGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACGTCTT
CACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGCTTAC
CAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCTGGAG
AATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCAGGAA
GGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAGATTG
CCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAAACTT
AATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACCGCAA
GAATAAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGGCCACG
CCATCCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTCCCCAT
CAATACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAGCAGCA
GCAGTACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAGCAAGT
CCCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGCC
TCCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAGG
AGGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACCC
CATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTCT
CGCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCTTGGC
CGTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGTC
GTTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGGC
GCGAAGCAACAACACCGCGACCAACAGACTGACAGATCTGGCAGCAGCAG
CAGCAGCCACAAAAATTAGATGGAAGAAGCCGGCGAGGAGGAAGAGGGCG
TACTATACGTCCACTGCAATCGGTGCCAGCAGAGCCTCTCCTCCTTCTAC
AAATCCTCTTGTGGGCACTGCTTTTGCGTGGACTGTGCCACCACTCATTT
CGCTAAAGACCCCTGCTGCCCCGTCTGTGGCCTTCGCCTCTCCCAAAAGC
ACTTCCGGGGACCCTTCGACGTAGGCATCTCTGCAGGCGAGCCCGTGGAA
GCGGCCATGTACAAGAACGTCTTCACTTCCAATCGATTGGATGAGGTTCT
GCAAAAGGCCTTATTGTGCTTACCAGCGGTCGAAGACGTCATCAACCTCG
TTACCACCCAGTTGTACCTGGAGAATCAACGCAGTCAGATCCTGCGGGAG
AAGGTGGAGCGGAAGCTCAGGAAGGCACGGGGGGATCTGAAGCTCACGGT
GCAGGAGGCCAGGAGTAAGATTGCCATCCTTTCCTCCCAGCTTACAGAGG
CAGAGGCTTGGAAACGCAAACTTAATGACGAGCTATCCACGGCCAAGCAG
GAGGTGTATGAGGTCCACCGCAAGAATAAGTCCATGGAGCAGATGCTTGC
ACGTCTTCGCAACGACGGCCACGCCATCCCTGCCGCCCTTCCACTCCCCA
GCCCGGCCTCGACACCTCCCCATCAATACCAACACCTCCGCCAGCAACCG
CAGCGATCGCAGCAGCAGCAGCAGCAGTACTACCCCCCTCCTTCCCCACG
TATCAGCGCCAGCAGCAGCAAGTCCCCCAGTGGGCTCCAATTCCCGCAGC
AGCAGCTGCTGCATCGTCCCGCCTCCGCCGCCCGCACTATCTCCCCTCAC
CACCCAGGAGAAGGAGGCGGAGGAGGAGGAGATGGAGGGAGGGGGTTCCA
AAATTCTTTGGTTCAGCCTACCCCATCTCGGAGTATGAGTGCTGGCAGCA
GCAACGGCAGCATTTCATTGTCTCGCTCTCTGTCGCCGCATCATTATCAT
CATCATCGTGGGGGGGGCTTGGCCGTCGGTGTAGGGGTGGGGGGGACGGG
CGCTTGTTCACCCGCCGGGGGTCGTTCCTCCCACGCGTCCTCCTCCTCGC
CTTTTGGAGGGAGATCTTTTGGCGCGAAGCAACAACACCGCGACCAACAG
ACTGACAGATCTGGCAGCAGCAGCAGCAGCCACAAAAATTAGATGGAAGA
AGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAATCGGTGCC
AGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACTGCTTTTGC
GTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGCCCCGTCTG
TGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGACGTAGGCA
TCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACGTCTTCACT
TCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGCTTACCAGC
GGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCTGGAGAATC
AACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCAGGAAGGCA
CGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAGATTGCCAT
CCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAAACTTAATG
ACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACCGCAAGAAT
AAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGGCCACGCCAT
CCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTCCCCATCAAT
ACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAGCAGCAGCAG
TACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAGCAAGTCCCC
CAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGCCTCCG
CCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAGGAGGA
GGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACCCCATC
TCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTCTCGCT
CTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCTTGGCCGTC
GGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGTCGTTC
CTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGGCGCGA
AGCAACAACACCGCGACCAACAGACTGACAGATCTGGCAGCAGCAGCAGC
AGCCACAAAAATTAG
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Synonyms
Publications