jgi.p|Nanoce1779_2|572444, mRNA_1504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572444
Unique Name	mRNA_1504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1001
Alignment location	scaffold_1:796500..797500 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572530
Track	FilteredModels2
ProteinId	572444

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:796500..797500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572444	gene_1504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572444	mRNA_1504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1504	CDS_1504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:796500..797500+
coding sequence from alignment at scaffold_1:796500..797500+

mRNA sequence

>mRNA_1504 ID=mRNA_1504|Name=jgi.p|Nanoce1779_2|572444|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ATTGAGGCGATGGGATGGCGGCCATCGGAGCCGGTACCGTTTTTCCCCCC
CTTTTTCACGCACGGGCATAATTTGGTATTTCCACCTACACAGATACAAA
CACATGCGTCATCTCATTGCTTATTGTGTCGTGGCTAACTGTTCCCGCCT
GCTGCTGCAGTTGCTTGGAGTCTCAGGAAGGGTTGGCCTGCGGCAAGGTC
AAGGGCAGATATTCATCCCCACTCAACCGCATGCTCGACCCACGACTCAG
CCAGCGCATCACCTAATCGCAGCATTGCACCACGCACCTACCAGCACGCA
TGTACTTATTCTATTTCTTTTCTCCCCTTTTCTACCTTGCACAGAAGGTC
GGCACAGAGGCCAGCACAAGCACTCAGACGCACAGATAGGCAGGAGGCTA
AAGCACACAGCCACCATGTTTGTCATTGATCGCATCCGCAGCTCGTCGGG
GGAAGGCAACCGCGCACCACGTCGTAAACGGGGTGGCAGCAGCGCTGCGC
TTACCCATGCGGGGTACACGGCTATCTTCTTTGGGGTCATTCGTCTCATC
TACTTGGCAAAAAACTCTGGGAGCAATTAAGGGAGCGGTAGTGGGAGAAG
GAGGAGGGGACCATGAATGGTGAGGAGAAATGGAGGAGAAGAGGGAGAGA
GAAATACAATACGCTTGCTTGAGTTGAGGGTTTAGAGGCCTGTACCAAGT
GGGCGGATGCGTCTGTACTGACAGCTTTGGTTGGCCACCATGCAGACGTT
GGAGGATTGGATCACGAGGAGTCGATCATGAGTGCGGACAATACGTAGAG
GCTGCAGTACTTTGCAGATGCAGATAATTTGTGTACTTGATTGGCAAGCA
GAGAGAGTGGGGCTGGTTGGGTTGCGGGATGTGGGAAGGTCGCATCATAT
CAGGGATTGCGTGAGGGCGCGCAAGGGGCAGCAGATGTACAGTAGTAGAC
GAACATCAAACCAAAGGCATGAAAATAAGCAAATCAAGAGAACGGCAGAT
A

protein sequence of jgi.p|Nanoce1779_2|572444

>mRNA_1504-protein ID=mRNA_1504-protein|Name=jgi.p|Nanoce1779_2|572444|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MRHLIAYCVVANCSRLLLQLLGVSGRVGLRQGQGQIFIPTQPHARPTTQP
AHHLIAALHHAPTSTHVLILFLFSPFLPCTEGRHRGQHKHSDAQIGRRLK
HTATMFVIDRIRSSSGEGNRAPRRKRGGSSAALTHAGYTAIFFGVIRLIY
LAKNSGSN*

mRNA from alignment at scaffold_1:796500..797500+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1504 ID=mRNA_1504|Name=jgi.p|Nanoce1779_2|572444|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_1:796500..797500+ (Nannochloropsis oceanica)
ATTGAGGCGATGGGATGGCGGCCATCGGAGCCGGTACCGTTTTTCCCCCC
CTTTTTCACGCACGGGCATAATTTGGTATTTCCACCTACACAGATACAAA
CACATGCGTCATCTCATTGCTTATTGTGTCGTGGCTAACTGTTCCCGCCT
GCTGCTGCAGTTGCTTGGAGTCTCAGGAAGGGTTGGCCTGCGGCAAGGTC
AAGGGCAGATATTCATCCCCACTCAACCGCATGCTCGACCCACGACTCAG
CCAGCGCATCACCTAATCGCAGCATTGCACCACGCACCTACCAGCACGCA
TGTACTTATTCTATTTCTTTTCTCCCCTTTTCTACCTTGCACAGAAGGTC
GGCACAGAGGCCAGCACAAGCACTCAGACGCACAGATAGGCAGGAGGCTA
AAGCACACAGCCACCATGTTTGTCATTGATCGCATCCGCAGCTCGTCGGG
GGAAGGCAACCGCGCACCACGTCGTAAACGGGGTGGCAGCAGCGCTGCGC
TTACCCATGCGGGGTACACGGCTATCTTCTTTGGGGTCATTCGTCTCATC
TACTTGGCAAAAAACTCTGGGAGCAATTAAGGGAGCGGTAGTGGGAGAAG
GAGGAGGGGACCATGAATGGTGAGGAGAAATGGAGGAGAAGAGGGAGAGA
GAAATACAATACGCTTGCTTGAGTTGAGGGTTTAGAGGCCTGTACCAAGT
GGGCGGATGCGTCTGTACTGACAGCTTTGGTTGGCCACCATGCAGACGTT
GGAGGATTGGATCACGAGGAGTCGATCATGAGTGCGGACAATACGTAGAG
GCTGCAGTACTTTGCAGATGCAGATAATTTGTGTACTTGATTGGCAAGCA
GAGAGAGTGGGGCTGGTTGGGTTGCGGGATGTGGGAAGGTCGCATCATAT
CAGGGATTGCGTGAGGGCGCGCAAGGGGCAGCAGATGTACAGTAGTAGAC
GAACATCAAACCAAAGGCATGAAAATAAGCAAATCAAGAGAACGGCAGAT
A

Coding sequence (CDS) from alignment at scaffold_1:796500..797500+

>mRNA_1504 ID=mRNA_1504|Name=jgi.p|Nanoce1779_2|572444|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_1:796500..797500+ (Nannochloropsis oceanica)
ATGCGTCATCTCATTGCTTATTGTGTCGTGGCTAACTGTTCCCGCCTGCT
GCTGCAGTTGCTTGGAGTCTCAGGAAGGGTTGGCCTGCGGCAAGGTCAAG
GGCAGATATTCATCCCCACTCAACCGCATGCTCGACCCACGACTCAGCCA
GCGCATCACCTAATCGCAGCATTGCACCACGCACCTACCAGCACGCATGT
ACTTATTCTATTTCTTTTCTCCCCTTTTCTACCTTGCACAGAAGGTCGGC
ACAGAGGCCAGCACAAGCACTCAGACGCACAGATAGGCAGGAGGCTAAAG
CACACAGCCACCATGTTTGTCATTGATCGCATCCGCAGCTCGTCGGGGGA
AGGCAACCGCGCACCACGTCGTAAACGGGGTGGCAGCAGCGCTGCGCTTA
CCCATGCGGGGTACACGGCTATCTTCTTTGGGGTCATTCGTCTCATCTAC
TTGGCAAAAAACTCTGGGAGCAATTAA

Synonyms

Publications