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Properties
| Property Name | Value |
|---|
| TranscriptId | 572523 |
| Track | FilteredModels2 |
| ProteinId | 572437 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:794389..796418 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1503 ID=mRNA_1503|Name=jgi.p|Nanoce1779_2|572437|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp
AGGGCATTCTCAGTTAGCATGCGGATGGTGGCATACTTCGACGTGCACAG
GCGCTGGCTTGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCTTT
CTCAGGGAGGGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATC
GCACGAAAGCGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCC
ACTCAGTAGACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGC
GGAAGGACGAGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCG
GCCCAGGTGGAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCAT
GCGAGAGCGGTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGACGG
GACAACTAATCGCGAGCGGGATGGCGTGGTTTTTGGTGCTCACGGCAGCT
TCACTACCAGCAGACGTGGCGGGGGAGAGGCCAGTGCTAATGATCCTGAC
AGTGCGTCATGCCTTTGGCCTGGCTGCGGATGTGCGCCGGGTGTTGAGAG
AAGCGGCGGAAGGAGAGGTGGACCGAAGGAAGATTCGCAAGCTCGCCCGC
GGCCTAACCCGTGTCCCAGGCGCCCCCTCCTACCTCCTCTATTCCGCCGC
CCTCCTCACTTGGCCTGCGACAAACTCACCCAAAGGAGTAGTCAAAGCCC
TCGGCCCTCTTCTCCTACGTGAGTTTTATACGGCATTGGCAGCAGGACTG
GACATGCTGCAGATCTTGGGAGTGTCTTCCGAAGCGGCCTCTGGCCCCGC
GGCGGCTGCGAGGTGTGGGCCGCGACGTTTCATGCCCGGCTCGCTTTCAA
CCATCAGTTTGGTGTTCGAGGCGTCGTTGGGACTCTCCTTGGTGGTGGCA
CTCTTGCGGAGTCGGAACGAAGGCGGGATGCTGCTACGACGGTGTCTGGC
CACCCTGCTCTATGCCAACTTCCTTTACAACCGCGTCGGTCATCTTCCAG
GGCTTAAGGTATGCGTAACATGTTTGTCCCCATCCGTGGGTCCGCGCTCT
CACTTTCTGATGAGAGAATCACTCCCCTTCTCTTTGCCACCCAATTCACA
TCCTATCCAACAGGAAGCTTTAGGTCGACGCTCCGTAGGCGGCTCAGTCG
CTGCCTTGCTCAAGCCCTTATTCAAGGACCTGGAGCCAACCACCCGGCAA
CTCACTGCCATTGGCCGCGCTTCACTCGCCGAGCTTGACACGGTGCCCGG
GGTGGGGGAGAAGGTCAGGTCGACGTTGCGGCTCTTGGGGTTCTTGGAAG
ACGAGCAAGGCGTAACAGAGGAAGGTTCGCAGGGGAATGGGGGTCTCAGT
TGAGGAAGACAGAAAACGCAGACGCAGAGAGCAGTGTACAAAAGAAAAAA
ACACAAAGTACTCATTTCCTCGTTTG back to topprotein sequence of jgi.p|Nanoce1779_2|572437 >mRNA_1503-protein ID=mRNA_1503-protein|Name=jgi.p|Nanoce1779_2|572437|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MRMVAYFDVHRRWLVTLATILLALLILSQGGQSSPADVSDPSPIARKRAP
AAGKRPKGAKPLSRPAGRRPTLPVPERRKDEVKIGGSKTAAPAAAQVEVE
EVEEGLLEEAMRERSINKYFSADPLWTGQLIASGMAWFLVLTAASLPADV
AGERPVLMILTVRHAFGLAADVRRVLREAAEGEVDRRKIRKLARGLTRVP
GAPSYLLYSAALLTWPATNSPKGVVKALGPLLLREFYTALAAGLDMLQIL
GVSSEAASGPAAAARCGPRRFMPGSLSTISLVFEASLGLSLVVALLRSRN
EGGMLLRRCLATLLYANFLYNRVGHLPGLKVCVTCLSPSVGPRSHFLMRE
SLPFSLPPNSHPIQQEALGRRSVGGSVAALLKPLFKDLEPTTRQLTAIGR
ASLAELDTVPGVGEKVRSTLRLLGFLEDEQGVTEEGSQGNGGLS* back to topmRNA from alignment at scaffold_1:794389..796418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1503 ID=mRNA_1503|Name=jgi.p|Nanoce1779_2|572437|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_1:794389..796418- (Nannochloropsis oceanica)
AGGGCATTCTCAGTTAGCATGCGGATGGTGGCATACTTCGACGTGCACAG
GCGCTGGCTTGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCTTT
CTCAGGGAGGGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATC
GCACGAAAGCGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCC
ACTCAGTAGACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGC
GGAAGGACGAGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCG
GCCCAGGTGGAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCAT
GCGAGAGCGGTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGACGG
GACAACTAATCGCGAGCGGGATGGCGTGGTTTTTGGTGGTACGTGGAGAT
ACTGAGGTGGGCTTTTGAACCTGAGGAAAACTGCGTGCACGGTGATCATG
TATTTGCTCACATAGACGACTTTGTGAATGTGGAAATCAACATGTGTTTA
AAGGTTAATACCGCGCGGCTGTAGATATGATGAATATTTACCGTTTCCCA
CAGAAAATCATCACCTGTGAAGTCAGAAATCGTCTGTGGAGGCGCAATTT
TTCTGCCCCGCGTTTACCAGACCAACAAGCACGCGTTTGAGGCCTGCCTG
CAAGAGTAACGCCACACTCTGCCATTCAAGAATGATTTCATTTTCTCAAG
ATCCTCGCCAACCTCCTTTTACATGATCACTTTTTAATCCGCGTCCCTAC
CAACCCACAACTAGCTCACGGCAGCTTCACTACCAGCAGACGTGGCGGGG
GAGAGGCCAGTGCTAATGATCCTGACAGTGCGTCATGCCTTTGGCCTGGC
TGCGGATGTGCGCCGGGTGTTGAGAGAAGCGGCGGAAGGAGAGGTGGACC
GAAGGAAGATTCGCAAGGTAAGAGAGAGGGATTGATGGAGAGAGGGCGAT
GGAGAAACTACAAGTCTTGAATACACATGGGTAATATTTGTCATTTCTTT
TCTATTTAATAATTTTGTTTTCATTTTAGCTTACAGACATTTCTCTCTCC
CGACCCGAAAATCAGCTCGCCCGCGGCCTAACCCGTGTCCCAGGCGCCCC
CTCCTACCTCCTCTATTCCGCCGCCCTCCTCACTTGGCCTGCGACAAACT
CACCCAAAGGAGTAGTCAAAGCCCTCGGCCCTCTTCTCCTACGTGAGTTT
TATACGGCATTGGCAGCAGGACTGGACATGCTGCAGATCTTGGGAGTGTC
TTCCGAAGCGGCCTCTGGCCCCGCGGCGGCTGCGAGGTGTGGGCCGCGAC
GTTTCATGCCCGGCTCGCTTTCAACCATCAGTTTGGTGTTCGAGGTAAGC
TTTTTTTAGTTCCTTTTTGCACGCATATTTTGTTGTCACTGCGAGTGATT
TCACGTCAGCCTTGGTCCTCATAGGCGTCGTTGGGACTCTCCTTGGTGGT
GGCACTCTTGCGGAGTCGGAACGAAGGCGGGATGCTGCTACGACGGTGTC
TGGCCACCCTGCTCTATGCCAACTTCCTTTACAACCGCGTCGGTCATCTT
CCAGGGCTTAAGGTATGCGTAACATGTTTGTCCCCATCCGTGGGTCCGCG
CTCTCACTTTCTGATGAGAGAATCACTCCCCTTCTCTTTGCCACCCAATT
CACATCCTATCCAACAGGAAGCTTTAGGTCGACGCTCCGTAGGCGGCTCA
GTCGCTGCCTTGCTCAAGCCCTTATTCAAGGACCTGGAGCCAACCACCCG
GCAACTCACTGCCATTGGCCGCGCTTCACTCGCCGAGCTTGACACGGTGC
CCGGGGTGGGGGAGAAGGTCAGGTCGACGTTGCGGCTCTTGGGGTTCTTG
GAAGACGAGCAAGGCGTAACAGAGGAAGGTTCGCAGGGGAATGGGGGTCT
CAGTTGAGGAAGACAGAAAACGCAGACGCAGAGAGCAGTGTACAAAAGAA
AAAAACACAAAGTACTCATTTCCTCGTTTG back to topCoding sequence (CDS) from alignment at scaffold_1:794389..796418- >mRNA_1503 ID=mRNA_1503|Name=jgi.p|Nanoce1779_2|572437|organism=Nannochloropsis oceanica|type=CDS|length=5340bp|location=Sequence derived from alignment at scaffold_1:794389..796418- (Nannochloropsis oceanica)
GCGTCGTTGGGACTCTCCTTGGTGGTGGCACTCTTGCGGAGTCGGAACGA
AGGCGGGATGCTGCTACGACGGTGTCTGGCCACCCTGCTCTATGCCAACT
TCCTTTACAACCGCGTCGGTCATCTTCCAGGGCTTAAGGTATGCGTAACA
TGTTTGTCCCCATCCGTGGGTCCGCGCTCTCACTTTCTGATGAGAGAATC
ACTCCCCTTCTCTTTGCCACCCAATTCACATCCTATCCAACAGGAAGCTT
TAGGTCGACGCTCCGTAGGCGGCTCAGTCGCTGCCTTGCTCAAGCCCTTA
TTCAAGGACCTGGAGCCAACCACCCGGCAACTCACTGCCATTGGCCGCGC
TTCACTCGCCGAGCTTGACACGGTGCCCGGGGTGGGGGAGAAGGTCAGGT
CGACGTTGCGGCTCTTGGGGTTCTTGGAAGACGAGCAAGGCGTAACAGAG
GAAGGTTCGCAGGGGAATGGGGGTCTCAGTTGACTCGCCCGCGGCCTAAC
CCGTGTCCCAGGCGCCCCCTCCTACCTCCTCTATTCCGCCGCCCTCCTCA
CTTGGCCTGCGACAAACTCACCCAAAGGAGTAGTCAAAGCCCTCGGCCCT
CTTCTCCTACGTGAGTTTTATACGGCATTGGCAGCAGGACTGGACATGCT
GCAGATCTTGGGAGTGTCTTCCGAAGCGGCCTCTGGCCCCGCGGCGGCTG
CGAGGTGTGGGCCGCGACGTTTCATGCCCGGCTCGCTTTCAACCATCAGT
TTGGTGTTCGAGCTCACGGCAGCTTCACTACCAGCAGACGTGGCGGGGGA
GAGGCCAGTGCTAATGATCCTGACAGTGCGTCATGCCTTTGGCCTGGCTG
CGGATGTGCGCCGGGTGTTGAGAGAAGCGGCGGAAGGAGAGGTGGACCGA
AGGAAGATTCGCAAGATGCGGATGGTGGCATACTTCGACGTGCACAGGCG
CTGGCTTGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCTTTCTC
AGGGAGGGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATCGCA
CGAAAGCGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCCACT
CAGTAGACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGCGGA
AGGACGAGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCGGCC
CAGGTGGAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCATGCG
AGAGCGGTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGACGGGAC
AACTAATCGCGAGCGGGATGGCGTGGTTTTTGGTGGCGTCGTTGGGACTC
TCCTTGGTGGTGGCACTCTTGCGGAGTCGGAACGAAGGCGGGATGCTGCT
ACGACGGTGTCTGGCCACCCTGCTCTATGCCAACTTCCTTTACAACCGCG
TCGGTCATCTTCCAGGGCTTAAGGTATGCGTAACATGTTTGTCCCCATCC
GTGGGTCCGCGCTCTCACTTTCTGATGAGAGAATCACTCCCCTTCTCTTT
GCCACCCAATTCACATCCTATCCAACAGGAAGCTTTAGGTCGACGCTCCG
TAGGCGGCTCAGTCGCTGCCTTGCTCAAGCCCTTATTCAAGGACCTGGAG
CCAACCACCCGGCAACTCACTGCCATTGGCCGCGCTTCACTCGCCGAGCT
TGACACGGTGCCCGGGGTGGGGGAGAAGGTCAGGTCGACGTTGCGGCTCT
TGGGGTTCTTGGAAGACGAGCAAGGCGTAACAGAGGAAGGTTCGCAGGGG
AATGGGGGTCTCAGTTGACTCGCCCGCGGCCTAACCCGTGTCCCAGGCGC
CCCCTCCTACCTCCTCTATTCCGCCGCCCTCCTCACTTGGCCTGCGACAA
ACTCACCCAAAGGAGTAGTCAAAGCCCTCGGCCCTCTTCTCCTACGTGAG
TTTTATACGGCATTGGCAGCAGGACTGGACATGCTGCAGATCTTGGGAGT
GTCTTCCGAAGCGGCCTCTGGCCCCGCGGCGGCTGCGAGGTGTGGGCCGC
GACGTTTCATGCCCGGCTCGCTTTCAACCATCAGTTTGGTGTTCGAGCTC
ACGGCAGCTTCACTACCAGCAGACGTGGCGGGGGAGAGGCCAGTGCTAAT
GATCCTGACAGTGCGTCATGCCTTTGGCCTGGCTGCGGATGTGCGCCGGG
TGTTGAGAGAAGCGGCGGAAGGAGAGGTGGACCGAAGGAAGATTCGCAAG
ATGCGGATGGTGGCATACTTCGACGTGCACAGGCGCTGGCTTGTCACACT
GGCAACCATTTTACTCGCCCTCCTCATCCTTTCTCAGGGAGGGCAATCGT
CCCCTGCGGACGTCTCGGACCCTTCTCCGATCGCACGAAAGCGGGCGCCA
GCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCCACTCAGTAGACCAGCAGG
GCGTAGGCCAACCTTACCCGTGCCTGAGAGGCGGAAGGACGAGGTCAAGA
TCGGAGGGAGCAAGACGGCGGCGCCCGCAGCGGCCCAGGTGGAGGTAGAG
GAAGTTGAGGAAGGGCTGCTTGAGGAGGCCATGCGAGAGCGGTCAATCAA
CAAATATTTTTCCGCGGACCCTTTGTGGACGGGACAACTAATCGCGAGCG
GGATGGCGTGGTTTTTGGTGGCGTCGTTGGGACTCTCCTTGGTGGTGGCA
CTCTTGCGGAGTCGGAACGAAGGCGGGATGCTGCTACGACGGTGTCTGGC
CACCCTGCTCTATGCCAACTTCCTTTACAACCGCGTCGGTCATCTTCCAG
GGCTTAAGGTATGCGTAACATGTTTGTCCCCATCCGTGGGTCCGCGCTCT
CACTTTCTGATGAGAGAATCACTCCCCTTCTCTTTGCCACCCAATTCACA
TCCTATCCAACAGGAAGCTTTAGGTCGACGCTCCGTAGGCGGCTCAGTCG
CTGCCTTGCTCAAGCCCTTATTCAAGGACCTGGAGCCAACCACCCGGCAA
CTCACTGCCATTGGCCGCGCTTCACTCGCCGAGCTTGACACGGTGCCCGG
GGTGGGGGAGAAGGTCAGGTCGACGTTGCGGCTCTTGGGGTTCTTGGAAG
ACGAGCAAGGCGTAACAGAGGAAGGTTCGCAGGGGAATGGGGGTCTCAGT
TGACTCGCCCGCGGCCTAACCCGTGTCCCAGGCGCCCCCTCCTACCTCCT
CTATTCCGCCGCCCTCCTCACTTGGCCTGCGACAAACTCACCCAAAGGAG
TAGTCAAAGCCCTCGGCCCTCTTCTCCTACGTGAGTTTTATACGGCATTG
GCAGCAGGACTGGACATGCTGCAGATCTTGGGAGTGTCTTCCGAAGCGGC
CTCTGGCCCCGCGGCGGCTGCGAGGTGTGGGCCGCGACGTTTCATGCCCG
GCTCGCTTTCAACCATCAGTTTGGTGTTCGAGCTCACGGCAGCTTCACTA
CCAGCAGACGTGGCGGGGGAGAGGCCAGTGCTAATGATCCTGACAGTGCG
TCATGCCTTTGGCCTGGCTGCGGATGTGCGCCGGGTGTTGAGAGAAGCGG
CGGAAGGAGAGGTGGACCGAAGGAAGATTCGCAAGATGCGGATGGTGGCA
TACTTCGACGTGCACAGGCGCTGGCTTGTCACACTGGCAACCATTTTACT
CGCCCTCCTCATCCTTTCTCAGGGAGGGCAATCGTCCCCTGCGGACGTCT
CGGACCCTTCTCCGATCGCACGAAAGCGGGCGCCAGCAGCAGGAAAGCGG
CCGAAAGGTGCCAAGCCACTCAGTAGACCAGCAGGGCGTAGGCCAACCTT
ACCCGTGCCTGAGAGGCGGAAGGACGAGGTCAAGATCGGAGGGAGCAAGA
CGGCGGCGCCCGCAGCGGCCCAGGTGGAGGTAGAGGAAGTTGAGGAAGGG
CTGCTTGAGGAGGCCATGCGAGAGCGGTCAATCAACAAATATTTTTCCGC
GGACCCTTTGTGGACGGGACAACTAATCGCGAGCGGGATGGCGTGGTTTT
TGGTGGCGTCGTTGGGACTCTCCTTGGTGGTGGCACTCTTGCGGAGTCGG
AACGAAGGCGGGATGCTGCTACGACGGTGTCTGGCCACCCTGCTCTATGC
CAACTTCCTTTACAACCGCGTCGGTCATCTTCCAGGGCTTAAGGTATGCG
TAACATGTTTGTCCCCATCCGTGGGTCCGCGCTCTCACTTTCTGATGAGA
GAATCACTCCCCTTCTCTTTGCCACCCAATTCACATCCTATCCAACAGGA
AGCTTTAGGTCGACGCTCCGTAGGCGGCTCAGTCGCTGCCTTGCTCAAGC
CCTTATTCAAGGACCTGGAGCCAACCACCCGGCAACTCACTGCCATTGGC
CGCGCTTCACTCGCCGAGCTTGACACGGTGCCCGGGGTGGGGGAGAAGGT
CAGGTCGACGTTGCGGCTCTTGGGGTTCTTGGAAGACGAGCAAGGCGTAA
CAGAGGAAGGTTCGCAGGGGAATGGGGGTCTCAGTTGACTCGCCCGCGGC
CTAACCCGTGTCCCAGGCGCCCCCTCCTACCTCCTCTATTCCGCCGCCCT
CCTCACTTGGCCTGCGACAAACTCACCCAAAGGAGTAGTCAAAGCCCTCG
GCCCTCTTCTCCTACGTGAGTTTTATACGGCATTGGCAGCAGGACTGGAC
ATGCTGCAGATCTTGGGAGTGTCTTCCGAAGCGGCCTCTGGCCCCGCGGC
GGCTGCGAGGTGTGGGCCGCGACGTTTCATGCCCGGCTCGCTTTCAACCA
TCAGTTTGGTGTTCGAGCTCACGGCAGCTTCACTACCAGCAGACGTGGCG
GGGGAGAGGCCAGTGCTAATGATCCTGACAGTGCGTCATGCCTTTGGCCT
GGCTGCGGATGTGCGCCGGGTGTTGAGAGAAGCGGCGGAAGGAGAGGTGG
ACCGAAGGAAGATTCGCAAGATGCGGATGGTGGCATACTTCGACGTGCAC
AGGCGCTGGCTTGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCT
TTCTCAGGGAGGGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGA
TCGCACGAAAGCGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAG
CCACTCAGTAGACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAG
GCGGAAGGACGAGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAG
CGGCCCAGGTGGAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCC
ATGCGAGAGCGGTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGAC
GGGACAACTAATCGCGAGCGGGATGGCGTGGTTTTTGGTG back to top
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