jgi.p|Nanoce1779_2|572432, mRNA_1502 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572432
Unique NamemRNA_1502
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length893
Alignment locationscaffold_1:792856..794055 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572518
TrackFilteredModels2
ProteinId572432
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:792856..794055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572432gene_1502Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572432mRNA_1502-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1502CDS_1502Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1502 ID=mRNA_1502|Name=jgi.p|Nanoce1779_2|572432|organism=Nannochloropsis oceanica|type=mRNA|length=893bp
AAACGATAGGGGAGGCAACGAAGCCTCAAGCTCAGACGAGGACGATACGT
CAGGCCCATTTTTGTTTTTTTGGGTCGCGGCGCTCCGCCAAATCTCTTCT
TACCATCTGGGTGCAGCCACGCTACGGTGCGTCAAGAGAAAAGTACACAA
GCCAGAATTGACTGAGAGGGACGACTTATAATCATGCCAAACGACTCCGC
CCTGCACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGA
TTGATGGCGGGGAATTCGACGTTAATGAAGCGGGAGCGGGTGAAAGAAGA
CCACTGCATCGAGCAGCTGGCAGCAATCACGTGGAAATATGCCGGTACTT
AATTGAGAAGGGTGCCAATATTGACCAGCCTGACAAGAGTGGGCGAACTG
CTTTGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGAATTGCTG
GTGGAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAATGACACC
CTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGGATGTTTC
TGGAAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATATCGATAAC
AAGACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTGTCATTAA
GGTGTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCTTGCTGCG
TCATGTAAGTCCTTGACTAACCATACAATATATCACGCGCGAAGGAAGAT
TAGGGCAAACAGGAAAAGGGAAAGAGGAGGAGGCAAGAAAAAAAGAAATA
AATAAGAATTTGTGAAGCACAATGAAGGGTTTTGATTTTTAACCCTTGAA
ATTACATGGCCAGCGATCTTGCGACAAGACTTGCCCCTTCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|572432

>mRNA_1502-protein ID=mRNA_1502-protein|Name=jgi.p|Nanoce1779_2|572432|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHV
EICRYLIEKGANIDQPDKSGRTALHWASISGHMESAELLVENGANLMAET
SSKMTPLHGAAEGGRAELIRMFLEKGDKMVLVNARDIDNKTAFDLAMQGK
HAAVIKVLKEMGDPNAQGAACCVM*
back to top

mRNA from alignment at scaffold_1:792856..794055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1502 ID=mRNA_1502|Name=jgi.p|Nanoce1779_2|572432|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_1:792856..794055- (Nannochloropsis oceanica)
AAACGATAGGGGAGGCAACGAAGCCTCAAGCTCAGACGAGGACGATACGT
CAGGCCCATTTTTGTTTTTTTGGGTCGCGGCGCTCCGCCAAATCTCTTCT
TACCATCTGGGTGCAGCCACGCTACGGTGCGTCAAGAGAAAAGTACACAA
GCCAGAATTGACTGAGAGGGACGACTTATAATCATGCCAAACGACTCCGC
CCTGCACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGA
TTGATGGCGGGGAATTCGACGTTAATGAAGGTGCGTGGACAGTGGAATGG
GACCAAAAGGACGAAGCTGTCACGGGCAGCCCAAGACAGTATGTCTGATG
TTTCATTTCTCTTCATTATTTCACACCCTTTGCCACCACATACGCAGCGG
GAGCGGGTGAAAGAAGACCACTGCATCGAGCAGCTGGCAGCAATCACGTG
GAAATATGCCGGTACTTAATTGAGAAGGGTGCCAATATTGACCAGGTTCG
AAGTAAATCGATGGAGGCTTCGCTTAAACGAGTAGACACACAAGGATTTG
CAAACTGCGTGGGATGCTATGACAACATCTTGCATCTCTCTGCCTCCTTT
CTTTTCATTCTTTTCCTCCTTCCCCTCTGGCGCATCCCCTCTCAGACTTC
TTTCATTCCTCCCTCCCATGTTACTGTCACAATAGCCTGACAAGAGTGGG
CGAACTGCTTTGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGA
ATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAA
TGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGG
ATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATAT
CGATAACAAGACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTG
TCATTAAGGTGTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCT
TGCTGCGTCATGTAAGTCCTTGACTAACCATACAATATATCACGCGCGAA
GGAAGATTAGGGCAAACAGGAAAAGGGAAAGAGGAGGAGGCAAGAAAAAA
AGAAATAAATAAGAATTTGTGAAGCACAATGAAGGGTTTTGATTTTTAAC
CCTTGAAATTACATGGCCAGCGATCTTGCGACAAGACTTGCCCCTTCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_1:792856..794055-

>mRNA_1502 ID=mRNA_1502|Name=jgi.p|Nanoce1779_2|572432|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_1:792856..794055- (Nannochloropsis oceanica)
CCTGACAAGAGTGGGCGAACTGCTTTGCACTGGGCCAGCATCAGCGGACA
CATGGAATCAGCAGAATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCG
AGACCTCCTCCAAAATGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGT
GCAGAGCTCATCAGGATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGT
GAATGCCCGCGATATCGATAACAAGACGGCATTTGACTTGGCGATGCAGG
GCAAGCATGCGGCTGTCATTAAGGTGTTAAAGGAGATGGGAGACCCGAAC
GCGCAGGGGGCGGCTTGCTGCGTCATGTAACGGGAGCGGGTGAAAGAAGA
CCACTGCATCGAGCAGCTGGCAGCAATCACGTGGAAATATGCCGGTACTT
AATTGAGAAGGGTGCCAATATTGACCAGATGCCAAACGACTCCGCCCTGC
ACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGATTGAT
GGCGGGGAATTCGACGTTAATGAAGCCTGACAAGAGTGGGCGAACTGCTT
TGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGAATTGCTGGTG
GAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAATGACACCCTT
GCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGGATGTTTCTGG
AAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATATCGATAACAAG
ACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTGTCATTAAGGT
GTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCTTGCTGCGTCA
TGTAACGGGAGCGGGTGAAAGAAGACCACTGCATCGAGCAGCTGGCAGCA
ATCACGTGGAAATATGCCGGTACTTAATTGAGAAGGGTGCCAATATTGAC
CAGATGCCAAACGACTCCGCCCTGCACAAGTCGTGCCATAATGGAGAGCT
TGACGCTGTGCAGCGGCTGATTGATGGCGGGGAATTCGACGTTAATGAAG
CCTGACAAGAGTGGGCGAACTGCTTTGCACTGGGCCAGCATCAGCGGACA
CATGGAATCAGCAGAATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCG
AGACCTCCTCCAAAATGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGT
GCAGAGCTCATCAGGATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGT
GAATGCCCGCGATATCGATAACAAGACGGCATTTGACTTGGCGATGCAGG
GCAAGCATGCGGCTGTCATTAAGGTGTTAAAGGAGATGGGAGACCCGAAC
GCGCAGGGGGCGGCTTGCTGCGTCATGTAACGGGAGCGGGTGAAAGAAGA
CCACTGCATCGAGCAGCTGGCAGCAATCACGTGGAAATATGCCGGTACTT
AATTGAGAAGGGTGCCAATATTGACCAGATGCCAAACGACTCCGCCCTGC
ACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGATTGAT
GGCGGGGAATTCGACGTTAATGAAG
back to top
Synonyms
Publications