jgi.p|Nanoce1779_2|522053, mRNA_1501 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522053
Unique NamemRNA_1501
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length162
Alignment locationscaffold_1:791692..791853 +

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Properties
Property NameValue
TranscriptId522139
TrackFilteredModels2
ProteinId522053
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:791692..791853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522053gene_1501Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522053mRNA_1501-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1501CDS_1501Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Nanoce1779_2|522053|organism=Nannochloropsis oceanica|type=mRNA|length=162bp
GGCCGCTCGTTGTACCAGAGCGACAAGCCCTTGACTGGAAGTCAGATCAT
GCGCGGCGCGTACATGAACTCGTCCAGCCAGGATATCGGCCCAGATCCTG
ACTTTGACTTTAAAAGTGGCGAGTGGCATGGTAAGCGGAATAACCCGAAT
AGCAGGGCGTAA
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protein sequence of jgi.p|Nanoce1779_2|522053

>mRNA_1501-protein ID=mRNA_1501-protein|Name=jgi.p|Nanoce1779_2|522053|organism=Nannochloropsis oceanica|type=polypeptide|length=54bp
GRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDFDFKSGEWHGKRNNPN
SRA*
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mRNA from alignment at scaffold_1:791692..791853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Nanoce1779_2|522053|organism=Nannochloropsis oceanica|type=mRNA|length=162bp|location=Sequence derived from alignment at scaffold_1:791692..791853+ (Nannochloropsis oceanica)
GGCCGCTCGTTGTACCAGAGCGACAAGCCCTTGACTGGAAGTCAGATCAT
GCGCGGCGCGTACATGAACTCGTCCAGCCAGGATATCGGCCCAGATCCTG
ACTTTGACTTTAAAAGTGGCGAGTGGCATGGTAAGCGGAATAACCCGAAT
AGCAGGGCGTAA
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Coding sequence (CDS) from alignment at scaffold_1:791692..791853+

>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Nanoce1779_2|522053|organism=Nannochloropsis oceanica|type=CDS|length=162bp|location=Sequence derived from alignment at scaffold_1:791692..791853+ (Nannochloropsis oceanica)
GGCCGCTCGTTGTACCAGAGCGACAAGCCCTTGACTGGAAGTCAGATCAT
GCGCGGCGCGTACATGAACTCGTCCAGCCAGGATATCGGCCCAGATCCTG
ACTTTGACTTTAAAAGTGGCGAGTGGCATGGTAAGCGGAATAACCCGAAT
AGCAGGGCGTAA
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Synonyms
Publications