jgi.p|Nanoce1779_2|572429, mRNA_1500 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572429
Unique Name	mRNA_1500
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	967
Alignment location	scaffold_1:791060..792175 -

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Properties


Property Name	Value
TranscriptId	572515
Track	FilteredModels2
ProteinId	572429

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:791060..792175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572429	gene_1500	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572429	mRNA_1500-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1500	CDS_1500	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:791060..792175-
coding sequence from alignment at scaffold_1:791060..792175-

mRNA sequence

>mRNA_1500 ID=mRNA_1500|Name=jgi.p|Nanoce1779_2|572429|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
GTCAGACACTGCCAGATATGCATTTTTGCTTTTTTTCTTCTCATGTATCT
CTTTTGGGCTTAACTTTCTATTTTACGTCTCCTTTCATTTTAAACATTGT
GGCGTTGCGATTGAGGCGATAGAATGCCTTCAACCTTCATCCACACCCTC
CCCTCTTACGGGGGAAGCCCCTCCTGCATACCCAACCCGGATTTCTTTTA
CCGGTACATCATTGAATCGTCATGTGACAAACACCGATGTCATGCAAAAA
ACAACGTCATGCCCTCTGCCTAACTTGACTGGTCTCCCCCGTACCTTAAG
GACCACACGCACACCCTCCCATTTACGCCCTGCTATTCGGGTTATTCCGC
TTACCATGCCACTCGCCACTTTTAAAGTCAAAGTCAGGATCTGGGCCGAT
ATCCTGGCTGGACGAGTTCATGTACGCGCCGCGCATGATCTGACTTCCAG
TCAAGGGCTTGTCGCTCTGGTACAACGAGCGGCCGTCGCGGAGCTTGCGG
ATGCCGTAGGGCAAGAGAGCCGCTCCGGAGATGCCCAGCATCATCACCAT
CAACGTGAGGCGCTTCCGATTACGAATAGACGCTGACGCTGCTTCTTTGC
CAGAAGCGGCGGCAGCCATCATCATCATCATCATCATCATCACTCCCGTC
ACCACGTTGGTTGCGTGCCGTTTGACAGCTCAGCGTTGCTTGGACTTGGA
GAGCGAGGCGCCAAAGGAGCCTGTGCCTTTGCCTGTCAGAGACCCGCGGC
TGCTCACTGAACCACTTAAGACGCCTTGCAGCCTTTCTGCCGTCGAGAAT
CCCTTGGTCTTTGGCTTGGATATGCTTGGGGTAGCAGTGGTGGCGGCGAA
TGTCTTCTTGCCTTTGCCCTTGCCCATGCAAATGATCGATGGGAGCAGGC
TGTCGCTCGTACGTGGCGGGCTTGGACTTGCCCTCCCCGACAGAGCGGTG
GCAAAGTGGTAGCCTGT

protein sequence of jgi.p|Nanoce1779_2|572429

>mRNA_1500-protein ID=mRNA_1500-protein|Name=jgi.p|Nanoce1779_2|572429|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MPSIITINVRRFRLRIDADAASLPEAAAAIIIIIIIITPVTTLVACRLTA
QRCLDLESEAPKEPVPLPVRDPRLLTEPLKTPCSLSAVENPLVFGLDMLG
VAVVAANVFLPLPLPMQMIDGSRLSLVRGGLGLALPDRAVAKW*

mRNA from alignment at scaffold_1:791060..792175-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1500 ID=mRNA_1500|Name=jgi.p|Nanoce1779_2|572429|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at scaffold_1:791060..792175- (Nannochloropsis oceanica)
GTCAGACACTGCCAGATATGCATTTTTGCTTTTTTTCTTCTCATGTATCT
CTTTTGGGCTTAACTTTCTATTTTACGTCTCCTTTCATTTTAAACATTGT
GGCGTTGCGATTGAGGCGATAGAATGCCTTCAACCTTCATCCACACCCTC
CCCTCTTACGGGGGAAGCCCCTCCTGCATACCCAACCCGGATTTCTTTTA
CCGGTACATCATTGAATCGTCATGTGACAAACACCGATGTCATGCAAAAA
ACAACGTCATGCCCTCTGCCTAACTTGACTGGTCTCCCCCGTACCTTAAG
GACCACACGCACACCCTCCCATTTACGCCCTGCTATTCGGGTTATTCCGC
TTACCATGCCACTCGCCACTTTTAAAGTCAAAGTCAGGATCTGGGCCGAT
ATCCTGGCTGGACGAGTTCATGTACGCGCCGCGCATGATCTGACTTCCAG
TCAAGGGCTTGTCGCTCTGGTACAACGAGCGGCCGTCGCGGAGCTTGCGG
ATGCCGTAGGGCAAGAGAGCCGCTGTGAGAGATTTTGGGGATGGGCATTA
AAGCAAAGGCAAGTGAGTCTCTATGAATTCAGAAGTTTAGAGATGAGCGT
CTTGATATATGTCGATTTTACCTACGAATGCCTCAGCAATCCATCCCTCC
TTTTCCTCCCTCCCTCCCCACCTCCGGAGATGCCCAGCATCATCACCATC
AACGTGAGGCGCTTCCGATTACGAATAGACGCTGACGCTGCTTCTTTGCC
AGAAGCGGCGGCAGCCATCATCATCATCATCATCATCATCACTCCCGTCA
CCACGTTGGTTGCGTGCCGTTTGACAGCTCAGCGTTGCTTGGACTTGGAG
AGCGAGGCGCCAAAGGAGCCTGTGCCTTTGCCTGTCAGAGACCCGCGGCT
GCTCACTGAACCACTTAAGACGCCTTGCAGCCTTTCTGCCGTCGAGAATC
CCTTGGTCTTTGGCTTGGATATGCTTGGGGTAGCAGTGGTGGCGGCGAAT
GTCTTCTTGCCTTTGCCCTTGCCCATGCAAATGATCGATGGGAGCAGGCT
GTCGCTCGTACGTGGCGGGCTTGGACTTGCCCTCCCCGACAGAGCGGTGG
CAAAGTGGTAGCCTGT

Coding sequence (CDS) from alignment at scaffold_1:791060..792175-

>mRNA_1500 ID=mRNA_1500|Name=jgi.p|Nanoce1779_2|572429|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_1:791060..792175- (Nannochloropsis oceanica)
ATGCCCAGCATCATCACCATCAACGTGAGGCGCTTCCGATTACGAATAGA
CGCTGACGCTGCTTCTTTGCCAGAAGCGGCGGCAGCCATCATCATCATCA
TCATCATCATCACTCCCGTCACCACGTTGGTTGCGTGCCGTTTGACAGCT
CAGCGTTGCTTGGACTTGGAGAGCGAGGCGCCAAAGGAGCCTGTGCCTTT
GCCTGTCAGAGACCCGCGGCTGCTCACTGAACCACTTAAGACGCCTTGCA
GCCTTTCTGCCGTCGAGAATCCCTTGGTCTTTGGCTTGGATATGCTTGGG
GTAGCAGTGGTGGCGGCGAATGTCTTCTTGCCTTTGCCCTTGCCCATGCA
AATGATCGATGGGAGCAGGCTGTCGCTCGTACGTGGCGGGCTTGGACTTG
CCCTCCCCGACAGAGCGGTGGCAAAGTGGTAG

Synonyms

Publications