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Properties
| Property Name | Value |
|---|
| TranscriptId | 572488 |
| Track | FilteredModels2 |
| ProteinId | 572402 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:772612..774990 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1495 ID=mRNA_1495|Name=jgi.p|Nanoce1779_2|572402|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp
GTGTCGGTGGGGTTGCGGGAGGAGCTGATTCGGGTGCAAGATGAGGGCCA
GCGGCATAAGGATAAGGCGGCGGAAAAGGAACGGAGGGCAGCGGCGACCC
TTGAAGAAGTGATTCGGAAGTTGATATACTACCAGGAGCGGGAAACACGG
GAGCTGCTGGGGAAGAACAGCCACAGGCTGGGTAGGATTGTCACGAGTCG
GAGCGGGCCTCATGGCATGACGGAGATTTGGGAGGATGGAACGGCCCATA
AGGAGCTCCAAAAACAAAGCGCCGAGCTTCTCCAACGTAAGGAGGACCTC
GACCGCCGTAAGCGTCAGATCGCCAAAGAAAGCCGCAAGGCCCTCGCCAC
CCTCAACTCGTCCTCAGCCAACAATGCTGCTGCTGGCGCCTCTTCCTCCT
CCGCTTCACCCGCGGGAGAGATGATGGTCCCTGGAGCTACGGCGGGAGGA
GGGGGGGAGAGCTCCGCGGACGGGCAGCCATTCGACGAATTGCAGCTAAT
GGAAGCAGAGGAAGGGGTACGCATGCATTTAGGACAGCTGAAGAAGGACG
AGGCAACGGTGCAAGAAGCACGGAAAGCCTTGGAGAAGGAGAAGTCGATG
TATGTCCGTGAGCTCCGCCGGGTCCAGCACGAGGATCGGTCGCGGTTCAG
CCGAAGGCCGGTGATGAATGGCCGATATTTGTTGTTGAGTCTGTTGGGAC
GGGGCGGATTCAGTGAGGTCTGGAAGGCATTTGATTTGCGAGAGTATTGC
GAGGCGGCGGTGAAGATCCACCAACTCAACTCCTCGTGGACGGAGGAGAA
GAAGCACAACTACATGAAGCACGCCACGCGAGAGTATGCGATTCATCGCG
AGATGGTTCATCCGCGCGTCGTCCGCCTTTTTGACGTCTTTGAGATCGAT
TCATCTTCCTTTGCGACGGTGCTCGAGTATTGCAAGGGCACCGACCTGGA
CTTCATGATGAAAACTCAAAAAAACATCCCTGAACGCGACGCCCGGGCCA
TCACTATACAAATCCTCTCCGGTCTCCGCTACCTCAACACGCCCTCGGGG
GAAGGCGCCAACCGCCGCCAAGGCATCATTCATTACGACTTGAAGCCAGG
CAACATCCTCTTCGACGAGCAAGGTGACGTTAAAATCACCGATTTTGGCC
TGTCGAAAATCGTTGACGACTCCAGCGATGGCCACTCGCTGGAGCTGACC
TCGCAGGGCGCGGGGACTTATTGGTACCTGCCACCTGAGTGCTTTGTGAT
GGGGAGCACCCCTCCACGGATCTCGAGCAAGGTGGACGTGTGGGCACTCG
GGGTCATCTTCTTCCAGATGATGTTTGGGACGCGGCCGTTTGGGGAGGGG
CAGAGTCAGGAGAAGGTGTTGCATGAGAACACCATGTTGAGGGCGACGCA
TGTTAATTTCCCGCCGAAGCCTTTGGTATCTCCGGACGCCAAGGAGTTTA
TAAAGGCGTGTTTGACACATAGCCAGGCGGATCGCCCAGATGTGCTTAAG
TTGTGCGGACATCCTTATTTACGGTTGAAAAAGCTTTAGATTTCGTTGTG
GGGAAGTATAGTTGTGTATGTCAGGAGACGGAGGGAGGGAAGGGAGGGGC
GGAGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|572402 >mRNA_1495-protein ID=mRNA_1495-protein|Name=jgi.p|Nanoce1779_2|572402|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MTEIWEDGTAHKELQKQSAELLQRKEDLDRRKRQIAKESRKALATLNSSS
ANNAAAGASSSSASPAGEMMVPGATAGGGGESSADGQPFDELQLMEAEEG
VRMHLGQLKKDEATVQEARKALEKEKSMYVRELRRVQHEDRSRFSRRPVM
NGRYLLLSLLGRGGFSEVWKAFDLREYCEAAVKIHQLNSSWTEEKKHNYM
KHATREYAIHREMVHPRVVRLFDVFEIDSSSFATVLEYCKGTDLDFMMKT
QKNIPERDARAITIQILSGLRYLNTPSGEGANRRQGIIHYDLKPGNILFD
EQGDVKITDFGLSKIVDDSSDGHSLELTSQGAGTYWYLPPECFVMGSTPP
RISSKVDVWALGVIFFQMMFGTRPFGEGQSQEKVLHENTMLRATHVNFPP
KPLVSPDAKEFIKACLTHSQADRPDVLKLCGHPYLRLKKL* back to topmRNA from alignment at scaffold_1:772612..774990- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1495 ID=mRNA_1495|Name=jgi.p|Nanoce1779_2|572402|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp|location=Sequence derived from alignment at scaffold_1:772612..774990- (Nannochloropsis oceanica)
GTGTCGGTGGGGTTGCGGGAGGAGCTGATTCGGGTGCAAGATGAGGGCCA
GCGGCATAAGGATAAGGCGGCGGAAAAGGAACGGAGGGCAGGTACGTAGT
GGAAAGGGGTATGAAAGGAGGAGAAGTCGAAAATTGATTAGTGCAGATCG
TTGTTCCGCTCGGAGAGTCCAAACAAGAGAGTCCAGGATTGAGCGAATGG
ATCAGGGAGAGTATTAATCGACGCCTACAGCTTAATGACTCTTTAATTGT
ACATTCACATGCCCCTCTCTCCCCTCCTCCCTCCCTTCCCCTCCCTCCCC
TGCCCACAGCGGCGACCCTTGAAGAAGTGATTCGGAAGTTGATATACTAC
CAGGAGCGGGAAACACGGGAGCTGCTGGGGAAGAACAGCCACAGGCTGGG
TAGGATTGTCACGAGTCGGAGCGGGCCTCATGGCATGACGGAGATTTGGG
AGGATGGAACGGCCCATAAGGTGCGTGCGACACTTCCTTTACATCTGTTG
TTGCTGCTCGGGTTGGAGGGAATCTGCTTCGTGATCCTCTGCAGCCGTTT
TAGAAGAGTGTTGCTTGACGAAGGAACAAGAAGGAGATTACAAGAGACGG
AGCGAGCAAGGTCTGGAGACCAATTGTGAAGCTGGCTTTCATCCATTCTC
ACTCTCTCTCTCTCTCTCGCACCCTGACCCCCACACCCACACCACCCACA
CCACCCCCAGGAGCTCCAAAAACAAAGCGCCGAGCTTCTCCAACGTAAGG
AGGACCTCGACCGCCGTAAGCGTCAGATCGCCAAAGAAAGCCGCAAGGCC
CTCGCCACCCTCAACTCGTCCTCAGCCAACAATGCTGCTGCTGGCGCCTC
TTCCTCCTCCGCTTCACCCGCGGGAGAGATGATGGTCCCTGGAGCTACGG
CGGGAGGAGGGGGGGAGAGCTCCGCGGACGGGCAGCCATTCGACGAATTG
CAGCTAATGGAAGCAGAGGAAGGGGTACGCATGCATTTAGGACAGCTGAA
GAAGGACGAGGCAACGGTGCAAGAAGCACGGAAAGCCTTGGAGAAGGAGA
AGTCGATGTATGTCCGTGAGCTCCGCCGGGTCCAGCACGAGGATCGGTCG
CGGTTCAGCCGAAGGCCGGTGATGAATGGCCGATATTTGTTGTTGAGTCT
GTTGGGACGGGGCGGATTCAGTGAGGTCTGGAAGGCATTTGATTTGCGAG
AGTATTGCGAGGTACGTTGTTTGAGGGGGGGAGGAAGGGAGAGAGAGGAA
GGGGGAGGATGAAAGAGGAGAGGGAGAAGGAGGATAGAAGCAGCTGTAGC
TATTTTCCCAGAACATGTTCTCATCAATTCACGCTGACCTTCTCCTTTCT
TTCCCACACACTTAGGCGGCGGTGAAGATCCACCAACTCAACTCCTCGTG
GACGGAGGAGAAGAAGCACAACTACATGAAGCACGCCACGCGAGAGTATG
CGATTCATCGCGAGATGGTTCATCCGCGCGTCGTCCGCCTTTTTGACGTC
TTTGAGATCGATTCATCTTCCTTTGCGACGGTGCTCGAGTATTGCAAGGG
TAACTAGTGGGGAGATCCGGGAGGGAAGCGGTTCGCATGCGATGTGTTTC
CCCCCCCTCACTTTCTCTTTCTCTGCATCCACTTCAGTATCTATATAACG
TTCACACCCTTCCCTTCCTCTCTCCCTCCTGTCCTCCCTCCTCCTCCCAC
TTCTCACAGGCACCGACCTGGACTTCATGATGAAAACTCAAAAAAACATC
CCTGAACGCGACGCCCGGGCCATCACTATACAAATCCTCTCCGGTCTCCG
CTACCTCAACACGCCCTCGGGGGAAGGCGCCAACCGCCGCCAAGGCATCA
TTCATTACGACTTGAAGCCAGGCAACATCCTCTTCGACGAGCAAGGTGAC
GTTAAAATCACCGATTTTGGCCTGTCGAAAATCGTTGACGACTCCAGCGA
TGGCCACTCGCTGGAGCTGACCTCGCAGGGCGCGGGGACTTATTGGTACC
TGCCACCTGAGTGCTTTGTGATGGGGAGCACCCCTCCACGGATCTCGAGC
AAGGTGGACGTGTGGGCACTCGGGGTCATCTTCTTCCAGATGATGTTTGG
GACGCGGCCGTTTGGGGAGGGGCAGAGTCAGGAGAAGGTGTTGCATGAGA
ACACCATGTTGAGGGCGACGCATGTTAATTTCCCGCCGAAGCCTTTGGTA
TCTCCGGACGCCAAGGAGTTTATAAAGGCGTGTTTGACACATAGCCAGGC
GGATCGCCCAGATGTGCTTAAGTTGTGCGGACATCCTTATTTACGGTTGA
AAAAGCTTTAGATTTCGTTGTGGGGAAGTATAGTTGTGTATGTCAGGAGA
CGGAGGGAGGGAAGGGAGGGGCGGAGGGA back to topCoding sequence (CDS) from alignment at scaffold_1:772612..774990- >mRNA_1495 ID=mRNA_1495|Name=jgi.p|Nanoce1779_2|572402|organism=Nannochloropsis oceanica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_1:772612..774990- (Nannochloropsis oceanica)
GCACCGACCTGGACTTCATGATGAAAACTCAAAAAAACATCCCTGAACGC
GACGCCCGGGCCATCACTATACAAATCCTCTCCGGTCTCCGCTACCTCAA
CACGCCCTCGGGGGAAGGCGCCAACCGCCGCCAAGGCATCATTCATTACG
ACTTGAAGCCAGGCAACATCCTCTTCGACGAGCAAGGTGACGTTAAAATC
ACCGATTTTGGCCTGTCGAAAATCGTTGACGACTCCAGCGATGGCCACTC
GCTGGAGCTGACCTCGCAGGGCGCGGGGACTTATTGGTACCTGCCACCTG
AGTGCTTTGTGATGGGGAGCACCCCTCCACGGATCTCGAGCAAGGTGGAC
GTGTGGGCACTCGGGGTCATCTTCTTCCAGATGATGTTTGGGACGCGGCC
GTTTGGGGAGGGGCAGAGTCAGGAGAAGGTGTTGCATGAGAACACCATGT
TGAGGGCGACGCATGTTAATTTCCCGCCGAAGCCTTTGGTATCTCCGGAC
GCCAAGGAGTTTATAAAGGCGTGTTTGACACATAGCCAGGCGGATCGCCC
AGATGTGCTTAAGTTGTGCGGACATCCTTATTTACGGTTGAAAAAGCTTT
AGGCGGCGGTGAAGATCCACCAACTCAACTCCTCGTGGACGGAGGAGAAG
AAGCACAACTACATGAAGCACGCCACGCGAGAGTATGCGATTCATCGCGA
GATGGTTCATCCGCGCGTCGTCCGCCTTTTTGACGTCTTTGAGATCGATT
CATCTTCCTTTGCGACGGTGCTCGAGTATTGCAAGGGAGCTCCAAAAACA
AAGCGCCGAGCTTCTCCAACGTAAGGAGGACCTCGACCGCCGTAAGCGTC
AGATCGCCAAAGAAAGCCGCAAGGCCCTCGCCACCCTCAACTCGTCCTCA
GCCAACAATGCTGCTGCTGGCGCCTCTTCCTCCTCCGCTTCACCCGCGGG
AGAGATGATGGTCCCTGGAGCTACGGCGGGAGGAGGGGGGGAGAGCTCCG
CGGACGGGCAGCCATTCGACGAATTGCAGCTAATGGAAGCAGAGGAAGGG
GTACGCATGCATTTAGGACAGCTGAAGAAGGACGAGGCAACGGTGCAAGA
AGCACGGAAAGCCTTGGAGAAGGAGAAGTCGATGTATGTCCGTGAGCTCC
GCCGGGTCCAGCACGAGGATCGGTCGCGGTTCAGCCGAAGGCCGGTGATG
AATGGCCGATATTTGTTGTTGAGTCTGTTGGGACGGGGCGGATTCAGTGA
GGTCTGGAAGGCATTTGATTTGCGAGAGTATTGCGAGATGACGGAGATTT
GGGAGGATGGAACGGCCCATAAGGCACCGACCTGGACTTCATGATGAAAA
CTCAAAAAAACATCCCTGAACGCGACGCCCGGGCCATCACTATACAAATC
CTCTCCGGTCTCCGCTACCTCAACACGCCCTCGGGGGAAGGCGCCAACCG
CCGCCAAGGCATCATTCATTACGACTTGAAGCCAGGCAACATCCTCTTCG
ACGAGCAAGGTGACGTTAAAATCACCGATTTTGGCCTGTCGAAAATCGTT
GACGACTCCAGCGATGGCCACTCGCTGGAGCTGACCTCGCAGGGCGCGGG
GACTTATTGGTACCTGCCACCTGAGTGCTTTGTGATGGGGAGCACCCCTC
CACGGATCTCGAGCAAGGTGGACGTGTGGGCACTCGGGGTCATCTTCTTC
CAGATGATGTTTGGGACGCGGCCGTTTGGGGAGGGGCAGAGTCAGGAGAA
GGTGTTGCATGAGAACACCATGTTGAGGGCGACGCATGTTAATTTCCCGC
CGAAGCCTTTGGTATCTCCGGACGCCAAGGAGTTTATAAAGGCGTGTTTG
ACACATAGCCAGGCGGATCGCCCAGATGTGCTTAAGTTGTGCGGACATCC
TTATTTACGGTTGAAAAAGCTTTAGGCGGCGGTGAAGATCCACCAACTCA
ACTCCTCGTGGACGGAGGAGAAGAAGCACAACTACATGAAGCACGCCACG
CGAGAGTATGCGATTCATCGCGAGATGGTTCATCCGCGCGTCGTCCGCCT
TTTTGACGTCTTTGAGATCGATTCATCTTCCTTTGCGACGGTGCTCGAGT
ATTGCAAGGGAGCTCCAAAAACAAAGCGCCGAGCTTCTCCAACGTAAGGA
GGACCTCGACCGCCGTAAGCGTCAGATCGCCAAAGAAAGCCGCAAGGCCC
TCGCCACCCTCAACTCGTCCTCAGCCAACAATGCTGCTGCTGGCGCCTCT
TCCTCCTCCGCTTCACCCGCGGGAGAGATGATGGTCCCTGGAGCTACGGC
GGGAGGAGGGGGGGAGAGCTCCGCGGACGGGCAGCCATTCGACGAATTGC
AGCTAATGGAAGCAGAGGAAGGGGTACGCATGCATTTAGGACAGCTGAAG
AAGGACGAGGCAACGGTGCAAGAAGCACGGAAAGCCTTGGAGAAGGAGAA
GTCGATGTATGTCCGTGAGCTCCGCCGGGTCCAGCACGAGGATCGGTCGC
GGTTCAGCCGAAGGCCGGTGATGAATGGCCGATATTTGTTGTTGAGTCTG
TTGGGACGGGGCGGATTCAGTGAGGTCTGGAAGGCATTTGATTTGCGAGA
GTATTGCGAGATGACGGAGATTTGGGAGGATGGAACGGCCCATAAGGCAC
CGACCTGGACTTCATGATGAAAACTCAAAAAAACATCCCTGAACGCGACG
CCCGGGCCATCACTATACAAATCCTCTCCGGTCTCCGCTACCTCAACACG
CCCTCGGGGGAAGGCGCCAACCGCCGCCAAGGCATCATTCATTACGACTT
GAAGCCAGGCAACATCCTCTTCGACGAGCAAGGTGACGTTAAAATCACCG
ATTTTGGCCTGTCGAAAATCGTTGACGACTCCAGCGATGGCCACTCGCTG
GAGCTGACCTCGCAGGGCGCGGGGACTTATTGGTACCTGCCACCTGAGTG
CTTTGTGATGGGGAGCACCCCTCCACGGATCTCGAGCAAGGTGGACGTGT
GGGCACTCGGGGTCATCTTCTTCCAGATGATGTTTGGGACGCGGCCGTTT
GGGGAGGGGCAGAGTCAGGAGAAGGTGTTGCATGAGAACACCATGTTGAG
GGCGACGCATGTTAATTTCCCGCCGAAGCCTTTGGTATCTCCGGACGCCA
AGGAGTTTATAAAGGCGTGTTTGACACATAGCCAGGCGGATCGCCCAGAT
GTGCTTAAGTTGTGCGGACATCCTTATTTACGGTTGAAAAAGCTTTAGGC
GGCGGTGAAGATCCACCAACTCAACTCCTCGTGGACGGAGGAGAAGAAGC
ACAACTACATGAAGCACGCCACGCGAGAGTATGCGATTCATCGCGAGATG
GTTCATCCGCGCGTCGTCCGCCTTTTTGACGTCTTTGAGATCGATTCATC
TTCCTTTGCGACGGTGCTCGAGTATTGCAAGGGAGCTCCAAAAACAAAGC
GCCGAGCTTCTCCAACGTAAGGAGGACCTCGACCGCCGTAAGCGTCAGAT
CGCCAAAGAAAGCCGCAAGGCCCTCGCCACCCTCAACTCGTCCTCAGCCA
ACAATGCTGCTGCTGGCGCCTCTTCCTCCTCCGCTTCACCCGCGGGAGAG
ATGATGGTCCCTGGAGCTACGGCGGGAGGAGGGGGGGAGAGCTCCGCGGA
CGGGCAGCCATTCGACGAATTGCAGCTAATGGAAGCAGAGGAAGGGGTAC
GCATGCATTTAGGACAGCTGAAGAAGGACGAGGCAACGGTGCAAGAAGCA
CGGAAAGCCTTGGAGAAGGAGAAGTCGATGTATGTCCGTGAGCTCCGCCG
GGTCCAGCACGAGGATCGGTCGCGGTTCAGCCGAAGGCCGGTGATGAATG
GCCGATATTTGTTGTTGAGTCTGTTGGGACGGGGCGGATTCAGTGAGGTC
TGGAAGGCATTTGATTTGCGAGAGTATTGCGAGATGACGGAGATTTGGGA
GGATGGAACGGCCCATAAGGCACCGACCTGGACTTCATGATGAAAACTCA
AAAAAACATCCCTGAACGCGACGCCCGGGCCATCACTATACAAATCCTCT
CCGGTCTCCGCTACCTCAACACGCCCTCGGGGGAAGGCGCCAACCGCCGC
CAAGGCATCATTCATTACGACTTGAAGCCAGGCAACATCCTCTTCGACGA
GCAAGGTGACGTTAAAATCACCGATTTTGGCCTGTCGAAAATCGTTGACG
ACTCCAGCGATGGCCACTCGCTGGAGCTGACCTCGCAGGGCGCGGGGACT
TATTGGTACCTGCCACCTGAGTGCTTTGTGATGGGGAGCACCCCTCCACG
GATCTCGAGCAAGGTGGACGTGTGGGCACTCGGGGTCATCTTCTTCCAGA
TGATGTTTGGGACGCGGCCGTTTGGGGAGGGGCAGAGTCAGGAGAAGGTG
TTGCATGAGAACACCATGTTGAGGGCGACGCATGTTAATTTCCCGCCGAA
GCCTTTGGTATCTCCGGACGCCAAGGAGTTTATAAAGGCGTGTTTGACAC
ATAGCCAGGCGGATCGCCCAGATGTGCTTAAGTTGTGCGGACATCCTTAT
TTACGGTTGAAAAAGCTTTAGGCGGCGGTGAAGATCCACCAACTCAACTC
CTCGTGGACGGAGGAGAAGAAGCACAACTACATGAAGCACGCCACGCGAG
AGTATGCGATTCATCGCGAGATGGTTCATCCGCGCGTCGTCCGCCTTTTT
GACGTCTTTGAGATCGATTCATCTTCCTTTGCGACGGTGCTCGAGTATTG
CAAGGGAGCTCCAAAAACAAAGCGCCGAGCTTCTCCAACGTAAGGAGGAC
CTCGACCGCCGTAAGCGTCAGATCGCCAAAGAAAGCCGCAAGGCCCTCGC
CACCCTCAACTCGTCCTCAGCCAACAATGCTGCTGCTGGCGCCTCTTCCT
CCTCCGCTTCACCCGCGGGAGAGATGATGGTCCCTGGAGCTACGGCGGGA
GGAGGGGGGGAGAGCTCCGCGGACGGGCAGCCATTCGACGAATTGCAGCT
AATGGAAGCAGAGGAAGGGGTACGCATGCATTTAGGACAGCTGAAGAAGG
ACGAGGCAACGGTGCAAGAAGCACGGAAAGCCTTGGAGAAGGAGAAGTCG
ATGTATGTCCGTGAGCTCCGCCGGGTCCAGCACGAGGATCGGTCGCGGTT
CAGCCGAAGGCCGGTGATGAATGGCCGATATTTGTTGTTGAGTCTGTTGG
GACGGGGCGGATTCAGTGAGGTCTGGAAGGCATTTGATTTGCGAGAGTAT
TGCGAGATGACGGAGATTTGGGAGGATGGAACGGCCCATAAG back to top
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