jgi.p|Nanoce1779_2|572400, mRNA_1494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572400
Unique NamemRNA_1494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length721
Alignment locationscaffold_1:770808..771883 +

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Properties
Property NameValue
TranscriptId572486
TrackFilteredModels2
ProteinId572400
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:770808..771883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572400gene_1494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572400mRNA_1494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1494CDS_1494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Nanoce1779_2|572400|organism=Nannochloropsis oceanica|type=mRNA|length=721bp
AGGATACAACAAAGATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTG
GCTCTGCGACCTGCCATGGCTGTCGGCACCAGGTCAGGCGTCCAGGCCCC
GACTCAGATCGTGCGGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGG
CCACGGGTTGGGAGGGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAG
GTGGTCTGCGGCATCATGGGGTTCTACACCACACTTTACCTCATCTCCAA
GCTCTTTACGGGCGGTGCCAAGGCCGTGCCTGAGGCGGTGGCGGCTGCCC
CCGCGGCTGCGAGCGCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAA
TTTTCCGATTACGTGTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAG
CCTGAACGATCCAAAGGCGTACGAGTAAGGAGGAGGAGGAGGAGAGAAGA
AGAGGATTTGAGGAGTAGAGTAAATGGATAGGAATATGGGGGGAGAAAGG
TAGGGAGGAAGGCGGATATATGGATTCAGCTAAAATTTGTCATGTGTGCT
TCCAATGGGTGTATACAGAGAGGGACGGTCGGTTGTAGATCCGCGATTCA
TCAGCGAGAAACAAAAGGAAAAAACAAGTACTCCAAGAAAGGGAAGTGAC
GCTATGTTATGCATTTGTAAAATTAGTGTTTTTGGGGTGTCTGCAGATGA
CATATTTGTCTTTTAATCTAC
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protein sequence of jgi.p|Nanoce1779_2|572400

>mRNA_1494-protein ID=mRNA_1494-protein|Name=jgi.p|Nanoce1779_2|572400|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MFAARRVFARTLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWE
GEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAAAPAAAS
ASNEAVSMADDKFSDYVSVPENMLKWEQSLNDPKAYE*
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mRNA from alignment at scaffold_1:770808..771883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Nanoce1779_2|572400|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at scaffold_1:770808..771883+ (Nannochloropsis oceanica)
AGGATACAACAAAGATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTG
GCTCTGCGACCTGCCATGGCTGTCGGCACCAGGTCAGGCGTCCAGGTAAG
AAGCAAAGAGTGTGGGGGGGGGATATGAATGAGGCTCCACGCGCCTTTGT
CCTGGCCTTGGTCCTCATCCTCTCCTTCTCCGCATCTACCTACACAATTA
GGCCCCGACTCAGATCGTGCGGCGGACGATGGCTGGGCACGGATCTGCTC
CTCCGGCCACGGGTTGGGAGGGCGAGGTCCGCAAGGTGCTCAAGGAGGAC
TGGCAGGTGGTCTGCGGCATCATGGGGTTCTACACCACACTTTACCTCAT
CTCCAAGCTCTTTACGGGCGGTGCCAAGGCCGTGCCTGAGGCGGGTACGA
GAATTGGGGGAGATTTTGGGGAAATTGACTTACGTCTCTCCACGTTTTAA
GTTTTGTTTGGGTACATCACTATGTTCTCCCCAACAGCTCTCCTTTCTCT
TGTCTTGTAATTTGGAGGGGGAATCCGGTTTAGTGGACCTCGATAAGATA
ACGTAGCAAGACCTACTGCTTTTCTTAACCTTCTTCCTTCCCCCTTCAAC
GAAATCCAATCTTCCTCTCTACACTCTCTCTTCACAATGACAGTGGCGGC
TGCCCCCGCGGCTGCGAGCGCGAGCAACGAGGCAGTGTCCATGGCTGACG
ACAAATTTTCCGATTACGTGTCCGTTCCCGAAAACATGCTTAAGTGGGAG
CAGAGCCTGAACGATCCAAAGGCGTACGAGTAAGGAGGAGGAGGAGGAGA
GAAGAAGAGGATTTGAGGAGTAGAGTAAATGGATAGGAATATGGGGGGAG
AAAGGTAGGGAGGAAGGCGGATATATGGATTCAGCTAAAATTTGTCATGT
GTGCTTCCAATGGGTGTATACAGAGAGGGACGGTCGGTTGTAGATCCGCG
ATTCATCAGCGAGAAACAAAAGGAAAAAACAAGTACTCCAAGAAAGGGAA
GTGACGCTATGTTATGCATTTGTAAAATTAGTGTTTTTGGGGTGTCTGCA
GATGACATATTTGTCTTTTAATCTAC
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Coding sequence (CDS) from alignment at scaffold_1:770808..771883+

>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Nanoce1779_2|572400|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_1:770808..771883+ (Nannochloropsis oceanica)
ATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTGGCTCTGCGACCTGC
CATGGCTGTCGGCACCAGGTCAGGCGTCCAGGCCCCGACTCAGATCGTGC
GGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGGCCACGGGTTGGGAG
GGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAGGTGGTCTGCGGCAT
CATGGGGTTCTACACCACACTTTACCTCATCTCCAAGCTCTTTACGGGCG
GTGCCAAGGCCGTGCCTGAGGCGGTGGCGGCTGCCCCCGCGGCTGCGAGC
GCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAATTTTCCGATTACGT
GTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAGCCTGAACGATCCAA
AGGCGTACGAGTAAATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTG
GCTCTGCGACCTGCCATGGCTGTCGGCACCAGGTCAGGCGTCCAGGCCCC
GACTCAGATCGTGCGGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGG
CCACGGGTTGGGAGGGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAG
GTGGTCTGCGGCATCATGGGGTTCTACACCACACTTTACCTCATCTCCAA
GCTCTTTACGGGCGGTGCCAAGGCCGTGCCTGAGGCGGTGGCGGCTGCCC
CCGCGGCTGCGAGCGCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAA
TTTTCCGATTACGTGTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAG
CCTGAACGATCCAAAGGCGTACGAGTAAATGTTTGCCGCTCGTCGAGTCT
TTGCGCGCACGTTGGCTCTGCGACCTGCCATGGCTGTCGGCACCAGGTCA
GGCGTCCAGGCCCCGACTCAGATCGTGCGGCGGACGATGGCTGGGCACGG
ATCTGCTCCTCCGGCCACGGGTTGGGAGGGCGAGGTCCGCAAGGTGCTCA
AGGAGGACTGGCAGGTGGTCTGCGGCATCATGGGGTTCTACACCACACTT
TACCTCATCTCCAAGCTCTTTACGGGCGGTGCCAAGGCCGTGCCTGAGGC
GGTGGCGGCTGCCCCCGCGGCTGCGAGCGCGAGCAACGAGGCAGTGTCCA
TGGCTGACGACAAATTTTCCGATTACGTGTCCGTTCCCGAAAACATGCTT
AAGTGGGAGCAGAGCCTGAACGATCCAAAGGCGTACGAGTAA
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Synonyms
Publications