jgi.p|Nanoce1779_2|572397, mRNA_1493 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572397
Unique Name	mRNA_1493
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1540
Alignment location	scaffold_1:768623..770353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572483
Track	FilteredModels2
ProteinId	572397

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:768623..770353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572397	gene_1493	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572397	mRNA_1493-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1493	CDS_1493	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:768623..770353+
coding sequence from alignment at scaffold_1:768623..770353+

mRNA sequence

>mRNA_1493 ID=mRNA_1493|Name=jgi.p|Nanoce1779_2|572397|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
ACAGATAACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGC
TTTCTGACTCCCAAATAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCA
GCCGTCAGCTCACAACAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCAC
GCCGAGTGCTGCCAGTGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCT
CCAGCTCGGTGGCACATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCC
AGCACCGCCTTATCTGCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGA
CGCCAGCATGTCGTATGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGA
CAGCCTCGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCT
ACTCCCGCCGCACGCGGAGCCCCAGCGACAGGCTACATCGACCTGACCAG
CGAGTTGAGCGACGAAAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGG
TGCAATTTATGGGCATAACACCTGGGACACGCCAAGCAATCCGGTCCTCA
GACATGCTGTTACGCGGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGC
CGAAGGTGGCAATGGCGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCC
TTCCTCGTGACATGATGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCAC
GCCAATAACCTGATTCGCCTCATCCTCTCGCATCGACCTATGCCTGTCGT
AAACCGAGGTGCCACCAACGCCCAGATCGCCCGCCTACCCACGCACACCC
TCCCGCGCACCACCACCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGG
AAGCGCAAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGA
GAATGCTGACGTCAAGGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCA
GCAGCAGCAGCAGGGGTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGAT
CCAAATTTGAATATGCCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGA
GGGGGGGCTGGATGCATGCACTATTTGCATGGAGGATTACAAGGGTGGGG
AGAAACTTTGTACGCTGCCCTGCTCGCACGTCTACCACTTCAAGTGCTGC
AAGAAGTGGTTGAAGACAAACAATATCTGTTGCATCTGCCGGGCGTCAAT
TGACAGCGGCTCTCCCTAAGGATACCAAAACACCACTAGGATTTTTTTCC
ATACACATAGAGACCAGCCTGATCAGCAACAGGAGCCGGAGGAAAGCGAG
GGTGAGGAGGAGGAGGAGGAGGAAGAGGTTCAGGATGTGAAGGAAAAGAA
AGGGGGGTTTGAAATATGAAGAGAAGGAGAAGTAAGAGGAGGACCAGGAC
CAGGAGGAAAAGGAAGAAGAGGAGGAGCACGAAAGGAAGCGACGAAATAG
TGTAGAGAGCAGTACATACACCACAATTCAACAAGAATGGAGTTACCATT
CAAGGCAAATGAAGTAAAGAAGGGAAAAAATAGTGTGAAA

protein sequence of jgi.p|Nanoce1779_2|572397

>mRNA_1493-protein ID=mRNA_1493-protein|Name=jgi.p|Nanoce1779_2|572397|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MPSPRHPKFAAAVSSQQANKRRRQAPATPSAASGSAASASTFPSSSSVAH
AAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRGSAMTASSAA
FASSSSRSSASTPAARGAPATGYIDLTSELSDENELEEETGDEEVQFMGI
TPGTRQAIRSSDMLLRGLFPAPPVRHRAEGGNGGGELVAASSGSLPRDMM
FTEGLAPLFSHANNLIRLILSHRPMPVVNRGATNAQIARLPTHTLPRTTT
SGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSSSRG
CVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKLCTL
PCSHVYHFKCCKKWLKTNNICCICRASIDSGSP*

mRNA from alignment at scaffold_1:768623..770353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1493 ID=mRNA_1493|Name=jgi.p|Nanoce1779_2|572397|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at scaffold_1:768623..770353+ (Nannochloropsis oceanica)
ACAGATAACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGC
TTTCTGACTCCCAAATGTAAGCAAGCTGGTTGTTTCGCACCCCTCCATGC
TATGAATGACCACAACCTGCATACCCACATACAGAATGCCGTCCCCACGG
CACCCCAAGTTCGCTGCAGCCGTCAGCTCACAACAAGCGAACAAGCGGCG
CCGCCAAGCTCCCGCCACGCCGAGTGCTGCCAGTGGATCCGCCGCCTCGG
CATCTACTTTCCCGTCCTCCAGCTCGGTGGCACATGCAGCAGCGCCCTCC
TCGTCTTCCAGCAGCTCCAGCACCGCCTTATCTGCCGCCGTAACTATTCC
CTCCGACCCGAGCTTTGACGCCAGCATGTCGTATGCAACAGCAGCAACCC
GTCGCGGCTCCGCCATGACAGCCTCGTCCGCTGCTTTTGCCTCGTCCTCG
TCTAGGTCCTCTGCTTCTACTCCCGCCGCACGCGGAGCCCCAGCGACAGG
CTACATCGACCTGACCAGCGAGTTGAGCGACGAAAATGAGCTGGAGGAGG
AGACTGGAGACGAAGAGGTGCAATTTATGGGCATAACACCTGGGACACGC
CAAGCAATCCGGTCCTCAGACATGCTGTTACGCGGACTCTTTCCCGCTCC
CCCTGTCCGTCACCGAGCCGAAGGTGGCAATGGCGGTGGCGAACTGGTTG
CTGCCAGCAGTGGTAGCCTTCCTCGTGACATGATGTTCACTGAGGGTTTG
GCTCCGCTCTTTTCGCACGCCAATAACCTGATTCGCCTCATCCTCTCGCA
TCGACCTATGCCTGTCGTAAACCGAGGTGCCACCAACGCCCAGATCGCCC
GCCTACCCACGCACACCCTCCCGCGCACCACCACCAGCGGTGTTCGCAGG
GGGAAGGGAACAGGAAGGAAGCGCAAGGCCCCGGGGGAGGTGCCTGTCCC
TTCCAACGCCGAGTCAGAGAATGCTGACGTCAAGGCCATGGCTGTAGGTC
AGCATAATGCAAGCAGCAGCAGCAGCAGCAGGGGTTGTGTAGCAGCGGCA
GCCACCTCGGGGGACGATCCAAATTTGAATATGCCGGACAGATCCAGCGT
GGCGGCAACAGCGGCGGAGGGGGGGCTGGATGCATGCACTATTTGCATGG
AGGATTACAAGGGTGGGGAGAAACTTTGTACGCTGCCCTGCTCGCACGTC
TACCACTTCAAGGTACGAGAAGACACAAATGGATGGGAAGGCGATCCAAA
TAGGGAAAGATTTATATTCTCTCATGTTTAAGGTGTGAGTTGTCACTCAC
CCGCTTTTCTTCCACGCCCCCTTTTTCGCCAACAGTGCTGCAAGAAGTGG
TTGAAGACAAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGG
CTCTCCCTAAGGATACCAAAACACCACTAGGATTTTTTTCCATACACATA
GAGACCAGCCTGATCAGCAACAGGAGCCGGAGGAAAGCGAGGGTGAGGAG
GAGGAGGAGGAGGAAGAGGTTCAGGATGTGAAGGAAAAGAAAGGGGGGTT
TGAAATATGAAGAGAAGGAGAAGTAAGAGGAGGACCAGGACCAGGAGGAA
AAGGAAGAAGAGGAGGAGCACGAAAGGAAGCGACGAAATAGTGTAGAGAG
CAGTACATACACCACAATTCAACAAGAATGGAGTTACCATTCAAGGCAAA
TGAAGTAAAGAAGGGAAAAAATAGTGTGAAA

Coding sequence (CDS) from alignment at scaffold_1:768623..770353+

>mRNA_1493 ID=mRNA_1493|Name=jgi.p|Nanoce1779_2|572397|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_1:768623..770353+ (Nannochloropsis oceanica)
ATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTCAGCTCACAACA
AGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAGTGCTGCCAGTG
GATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCTCGGTGGCACAT
GCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACCGCCTTATCTGC
CGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAGCATGTCGTATG
CAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCTCGTCCGCTGCT
TTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCCGCCGCACGCGG
AGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTTGAGCGACGAAA
ATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAATTTATGGGCATA
ACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATGCTGTTACGCGG
ACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGGTGGCAATGGCG
GTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTCGTGACATGATG
TTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAATAACCTGATTCG
CCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCGAGGTGCCACCA
ACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGCGCACCACCACC
AGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGCAAGGCCCCGGG
GGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGCTGACGTCAAGG
CCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCAGCAGCAGGGGT
TGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAATTTGAATATGCC
GGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGGGCTGGATGCAT
GCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAACTTTGTACGCTG
CCCTGCTCGCACGTCTACCACTTCAAGTGCTGCAAGAAGTGGTTGAAGAC
AAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGGCTCTCCCT
AAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTCAGCTCACAA
CAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAGTGCTGCCAG
TGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCTCGGTGGCAC
ATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACCGCCTTATCT
GCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAGCATGTCGTA
TGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCTCGTCCGCTG
CTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCCGCCGCACGC
GGAGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTTGAGCGACGA
AAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAATTTATGGGCA
TAACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATGCTGTTACGC
GGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGGTGGCAATGG
CGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTCGTGACATGA
TGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAATAACCTGATT
CGCCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCGAGGTGCCAC
CAACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGCGCACCACCA
CCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGCAAGGCCCCG
GGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGCTGACGTCAA
GGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCAGCAGCAGGG
GTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAATTTGAATATG
CCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGGGCTGGATGC
ATGCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAACTTTGTACGC
TGCCCTGCTCGCACGTCTACCACTTCAAGTGCTGCAAGAAGTGGTTGAAG
ACAAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGGCTCTCC
CTAA

Synonyms

Publications