jgi.p|Nanoce1779_2|572386, mRNA_1491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572386
Unique NamemRNA_1491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1014
Alignment locationscaffold_1:761183..762196 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572472
TrackFilteredModels2
ProteinId572386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:761183..762196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572386gene_1491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572386mRNA_1491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1491CDS_1491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1491 ID=mRNA_1491|Name=jgi.p|Nanoce1779_2|572386|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
AACAGGCCACTGTGAGCGTACTTGACCTCCACCACACCGCTACACAAAGC
CATAGGACCTTCCATTGTGATGTGAACATAGCTGTCTCTTGTCGGCGTGT
CACGCAGATCACGACTCCCCAACACCCCCAGCCAACCTCCCCTTCTACCT
TTCTCGCTCACAGGGTGAACGATCTGCCTACTCTGCCTGTCAAAAACGAA
GAGACCAGCTTGCCGTAATCACGAGCTTTTGAGTCTCCTTATCGTCCAGC
TCCTGCACCGCAGTATAATTTCCCCCATCCATCGGTGCCCACTAAGCCTG
AAAGCCAAGCCGCATCCCGCGTAGTAGCACAGATGGAGCCTGAGGATGTC
AAGGAGTACACGAAAATCGACTACTGGAATTCACGTTTTGCTCAAGAGGA
GTCATACGATTGGCTTGTGACATTTGAAGACATCGAGGCCCTGTTGAGAG
AGTACATACCAACCGACCGTCCAATCCGTGTGCTCCACCTTGGGTGCGGT
AACTCTCCTCTCTCCACAAACCTGAAAACCATGCTGCAACCGGGAAGCTA
CCTCTGTAACCAGGACTACTCTCAAGTTCTGATAAGCAGCATGAAAAAAC
TACACGGAGAGATACCGGGTGAGTTTGAGTGGATGGTTGGGGACATGACT
GATTTGGGCAGCGCCGGTTTCCTGCTCGCTTCCTTTGACGTTATCATCGA
AAAGGCGTCTTTGGACGCATTAACTGTAAATGAAGGCGACCCCTGGAATC
CGCGAGAGGAGGTCGTGGAGAATGTGGCGAAGGTAATGCGAGGCGTGACA
GATTTGTTGAAGGGAGATGACGGGAGTATTTTTTTGAGCATTTCTTTCCA
CCAAAAGCATTTTCGGCAAAAGCTGTTGAAAGGGTTTGATATCCAGGTGA
AGGATATCCCGACTACCAAGTCCTTGCCGCATTTTTTTTATGCTTGCAAA
CCAGTCAAGGCAAGCAAGTGACACAGAGGAAACACGAAGAACGAATGTGA
TGTTGTGCAGTTGC
back to top

protein sequence of jgi.p|Nanoce1779_2|572386

>mRNA_1491-protein ID=mRNA_1491-protein|Name=jgi.p|Nanoce1779_2|572386|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MEPEDVKEYTKIDYWNSRFAQEESYDWLVTFEDIEALLREYIPTDRPIRV
LHLGCGNSPLSTNLKTMLQPGSYLCNQDYSQVLISSMKKLHGEIPGEFEW
MVGDMTDLGSAGFLLASFDVIIEKASLDALTVNEGDPWNPREEVVENVAK
VMRGVTDLLKGDDGSIFLSISFHQKHFRQKLLKGFDIQVKDIPTTKSLPH
FFYACKPVKASK*
back to top

mRNA from alignment at scaffold_1:761183..762196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1491 ID=mRNA_1491|Name=jgi.p|Nanoce1779_2|572386|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at scaffold_1:761183..762196+ (Nannochloropsis oceanica)
AACAGGCCACTGTGAGCGTACTTGACCTCCACCACACCGCTACACAAAGC
CATAGGACCTTCCATTGTGATGTGAACATAGCTGTCTCTTGTCGGCGTGT
CACGCAGATCACGACTCCCCAACACCCCCAGCCAACCTCCCCTTCTACCT
TTCTCGCTCACAGGGTGAACGATCTGCCTACTCTGCCTGTCAAAAACGAA
GAGACCAGCTTGCCGTAATCACGAGCTTTTGAGTCTCCTTATCGTCCAGC
TCCTGCACCGCAGTATAATTTCCCCCATCCATCGGTGCCCACTAAGCCTG
AAAGCCAAGCCGCATCCCGCGTAGTAGCACAGATGGAGCCTGAGGATGTC
AAGGAGTACACGAAAATCGACTACTGGAATTCACGTTTTGCTCAAGAGGA
GTCATACGATTGGCTTGTGACATTTGAAGACATCGAGGCCCTGTTGAGAG
AGTACATACCAACCGACCGTCCAATCCGTGTGCTCCACCTTGGGTGCGGT
AACTCTCCTCTCTCCACAAACCTGAAAACCATGCTGCAACCGGGAAGCTA
CCTCTGTAACCAGGACTACTCTCAAGTTCTGATAAGCAGCATGAAAAAAC
TACACGGAGAGATACCGGGTGAGTTTGAGTGGATGGTTGGGGACATGACT
GATTTGGGCAGCGCCGGTTTCCTGCTCGCTTCCTTTGACGTTATCATCGA
AAAGGCGTCTTTGGACGCATTAACTGTAAATGAAGGCGACCCCTGGAATC
CGCGAGAGGAGGTCGTGGAGAATGTGGCGAAGGTAATGCGAGGCGTGACA
GATTTGTTGAAGGGAGATGACGGGAGTATTTTTTTGAGCATTTCTTTCCA
CCAAAAGCATTTTCGGCAAAAGCTGTTGAAAGGGTTTGATATCCAGGTGA
AGGATATCCCGACTACCAAGTCCTTGCCGCATTTTTTTTATGCTTGCAAA
CCAGTCAAGGCAAGCAAGTGACACAGAGGAAACACGAAGAACGAATGTGA
TGTTGTGCAGTTGC
back to top

Coding sequence (CDS) from alignment at scaffold_1:761183..762196+

>mRNA_1491 ID=mRNA_1491|Name=jgi.p|Nanoce1779_2|572386|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_1:761183..762196+ (Nannochloropsis oceanica)
ATGGAGCCTGAGGATGTCAAGGAGTACACGAAAATCGACTACTGGAATTC
ACGTTTTGCTCAAGAGGAGTCATACGATTGGCTTGTGACATTTGAAGACA
TCGAGGCCCTGTTGAGAGAGTACATACCAACCGACCGTCCAATCCGTGTG
CTCCACCTTGGGTGCGGTAACTCTCCTCTCTCCACAAACCTGAAAACCAT
GCTGCAACCGGGAAGCTACCTCTGTAACCAGGACTACTCTCAAGTTCTGA
TAAGCAGCATGAAAAAACTACACGGAGAGATACCGGGTGAGTTTGAGTGG
ATGGTTGGGGACATGACTGATTTGGGCAGCGCCGGTTTCCTGCTCGCTTC
CTTTGACGTTATCATCGAAAAGGCGTCTTTGGACGCATTAACTGTAAATG
AAGGCGACCCCTGGAATCCGCGAGAGGAGGTCGTGGAGAATGTGGCGAAG
GTAATGCGAGGCGTGACAGATTTGTTGAAGGGAGATGACGGGAGTATTTT
TTTGAGCATTTCTTTCCACCAAAAGCATTTTCGGCAAAAGCTGTTGAAAG
GGTTTGATATCCAGGTGAAGGATATCCCGACTACCAAGTCCTTGCCGCAT
TTTTTTTATGCTTGCAAACCAGTCAAGGCAAGCAAGTGA
back to top
Synonyms
Publications