jgi.p|Nanoce1779_2|626820, mRNA_1490 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626820
Unique NamemRNA_1490
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length916
Alignment locationscaffold_1:759657..760983 -

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Properties
Property NameValue
TranscriptId626906
TrackFilteredModels2
ProteinId626820
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:759657..760983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626820gene_1490Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626820mRNA_1490-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1490CDS_1490Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Nanoce1779_2|626820|organism=Nannochloropsis oceanica|type=mRNA|length=916bp
AGGTCCAAGCATGGAAACTAGCAGACACCAGGTCGAGACGGACGCCCTAA
GCTACGCACAGTTTGACTCGGCGACATATCTGGCCAACCTGGTCAAGGCT
GGTGTGCGCCAAGATGGCCGGAGTCTGACGGGCTTGCGGCCGCTGTCATT
ACTACAAGGCATCCTGCAGGGGACCACCGCGGGCTCCGCTTTGGTCAAGA
TTGGGGGCACCAAGGTTGTGGCAGGCGTCACCTTGCTTGTAGGCCAGCCA
GCTGAAGACACGCCGTCCAAAGGAGAAATCGGTGTGGAGGTACATCTACC
GCCGATGTGTCATCCTAAATACACGTCAATCCAGATCCAGCAAGAGGAAG
GCAAGGCCCTCGAGACGTTCGTGCAAAATGTGTTGCTCAAATGCGGCGTC
GTGCGACGCGAAGACCTGCGTATCTCGGAGGGTCGTCATGTCTGGAAGCT
TAATGTGGACATTCAGTGCCTGAGCCATGAAGGGAGCTTGGGGGACGCCT
GTATACTGGCGGCGGCGTCTGCGCTTGCGGACGTCCAGTTGCCCGCCACC
GCCTTAGACAAGGACGAGGAGGTCGTCATTTTGTCAGACACTCCACCCCG
GCCATTGGAGATGACCCGCTTTCCCGTTCCCCTCACCATCGGCCTTCACT
CTGACAAGTTCCTCTGCGACCTCTCCCTGACAGAAGAAGAGCGCATGCCC
ACACAAATGACTTTAGTGCTCGACGCGGAGAATGGGCACTTGTGTTCGGC
GCAGAAAGCCGGGGGTGCATCCATGGCCTCCGAGCAGCTTGCCCGTGCCT
TTGCCTTATGCAGTGCACGGCAGAAACAGGTCACACGTGCTCGCGGCCAA
CAAAAACCGAGATCCTTGTGAAAAGGAAAAAAGGCCAAAAAAAATCCCTT
CGAAAGGAGAATTGTG
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protein sequence of jgi.p|Nanoce1779_2|626820

>mRNA_1490-protein ID=mRNA_1490-protein|Name=jgi.p|Nanoce1779_2|626820|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
METSRHQVETDALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQG
ILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMC
HPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVD
IQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLE
MTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKA
GGASMASEQLARAFALCSARQKQVTRARGQQKPRSL*
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mRNA from alignment at scaffold_1:759657..760983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Nanoce1779_2|626820|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at scaffold_1:759657..760983- (Nannochloropsis oceanica)
AGGTCCAAGCATGGAAACTAGCAGACACCAGGTCGAGACGGACGCCCTAA
GCTACGCACAGTTTGACTCGGCGACATATCTGGCCAACCTGGTCAAGGCT
GGTGTGCGCCAAGATGGCCGGAGTCTGACGGGCTTGCGGCCGCTGTCATT
ACTACAAGGCATCCTGCAGGGGACCACCGCGGGCTCCGCTTTGGTCAAGA
TTGGGGGCACCAAGGTTGTGGCAGGCGTCACCTTGCTTGTAGGCCAGCCA
GCTGAAGACACGCCGTCCAAAGGAGAAATCGGTAAGTGACTGATTTATCA
GCGGGGCGACTTGGCAAGGTCGAAAGTGTATGAGTTTTGTGTTTCAGGGT
ATGGAAAAGGCCTTGTGACAGACAAATCGTGGGAGCGACTACGATTAGGA
AATGTCATCACTTTGAGAATCGGATGTGTTTAATTACTGCTTCATACCAT
CTGTTTGCCAGGTGTGGAGGTACATCTACCGCCGATGTGTCATCCTAAAT
ACACGTCAATCCAGATCCAGCAAGAGGAAGGCAAGGCCCTCGAGACGTTC
GTGCAAAATGTGTTGCTCAAATGCGGCGTCGTGCGACGCGAAGACCTGCG
TATCTCGGAGGGTCGTCATGTCTGGAAGCTTAATGTGGACATTCAGTGCC
TGAGCCATGAAGGGAGCTTGGGGGACGCCTGTATACTGGCGGCGGCGTCT
GCGCTTGCGGACGTCCAGTTGCCCGCCACCGCCTTAGACAAGGACGAGGA
GGTCGTCATTTTGTCAGGTGAAGCTTTGTTGTTGTTGTTGTTGTTGTTGG
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCCTTAAGGACACCTC
CTTTATAGTTACGCTTTTGTTTGATGTGAGGCATTTTCCTCTCATATTTA
CCCAAAACAAGTCTACCTCTTCATTTTTCCACGTCCTCAATCTTCCAGAC
ACTCCACCCCGGCCATTGGAGATGACCCGCTTTCCCGTTCCCCTCACCAT
CGGCCTTCACTCTGACAAGTTCCTCTGCGACCTCTCCCTGACAGAAGAAG
AGCGCATGCCCACACAAATGACTTTAGTGCTCGACGCGGAGAATGGGCAC
TTGTGTTCGGCGCAGAAAGCCGGGGGTGCATCCATGGCCTCCGAGCAGCT
TGCCCGTGCCTTTGCCTTATGCAGTGCACGGCAGAAACAGGTCACACGTG
CTCGCGGCCAACAAAAACCGAGATCCTTGTGAAAAGGAAAAAAGGCCAAA
AAAAATCCCTTCGAAAGGAGAATTGTG
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Coding sequence (CDS) from alignment at scaffold_1:759657..760983-

>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Nanoce1779_2|626820|organism=Nannochloropsis oceanica|type=CDS|length=2583bp|location=Sequence derived from alignment at scaffold_1:759657..760983- (Nannochloropsis oceanica)
ACACTCCACCCCGGCCATTGGAGATGACCCGCTTTCCCGTTCCCCTCACC
ATCGGCCTTCACTCTGACAAGTTCCTCTGCGACCTCTCCCTGACAGAAGA
AGAGCGCATGCCCACACAAATGACTTTAGTGCTCGACGCGGAGAATGGGC
ACTTGTGTTCGGCGCAGAAAGCCGGGGGTGCATCCATGGCCTCCGAGCAG
CTTGCCCGTGCCTTTGCCTTATGCAGTGCACGGCAGAAACAGGTCACACG
TGCTCGCGGCCAACAAAAACCGAGATCCTTGTGAGTGTGGAGGTACATCT
ACCGCCGATGTGTCATCCTAAATACACGTCAATCCAGATCCAGCAAGAGG
AAGGCAAGGCCCTCGAGACGTTCGTGCAAAATGTGTTGCTCAAATGCGGC
GTCGTGCGACGCGAAGACCTGCGTATCTCGGAGGGTCGTCATGTCTGGAA
GCTTAATGTGGACATTCAGTGCCTGAGCCATGAAGGGAGCTTGGGGGACG
CCTGTATACTGGCGGCGGCGTCTGCGCTTGCGGACGTCCAGTTGCCCGCC
ACCGCCTTAGACAAGGACGAGGAGGTCGTCATTTTGTCAGATGGAAACTA
GCAGACACCAGGTCGAGACGGACGCCCTAAGCTACGCACAGTTTGACTCG
GCGACATATCTGGCCAACCTGGTCAAGGCTGGTGTGCGCCAAGATGGCCG
GAGTCTGACGGGCTTGCGGCCGCTGTCATTACTACAAGGCATCCTGCAGG
GGACCACCGCGGGCTCCGCTTTGGTCAAGATTGGGGGCACCAAGGTTGTG
GCAGGCGTCACCTTGCTTGTAGGCCAGCCAGCTGAAGACACGCCGTCCAA
AGGAGAAATCGACACTCCACCCCGGCCATTGGAGATGACCCGCTTTCCCG
TTCCCCTCACCATCGGCCTTCACTCTGACAAGTTCCTCTGCGACCTCTCC
CTGACAGAAGAAGAGCGCATGCCCACACAAATGACTTTAGTGCTCGACGC
GGAGAATGGGCACTTGTGTTCGGCGCAGAAAGCCGGGGGTGCATCCATGG
CCTCCGAGCAGCTTGCCCGTGCCTTTGCCTTATGCAGTGCACGGCAGAAA
CAGGTCACACGTGCTCGCGGCCAACAAAAACCGAGATCCTTGTGAGTGTG
GAGGTACATCTACCGCCGATGTGTCATCCTAAATACACGTCAATCCAGAT
CCAGCAAGAGGAAGGCAAGGCCCTCGAGACGTTCGTGCAAAATGTGTTGC
TCAAATGCGGCGTCGTGCGACGCGAAGACCTGCGTATCTCGGAGGGTCGT
CATGTCTGGAAGCTTAATGTGGACATTCAGTGCCTGAGCCATGAAGGGAG
CTTGGGGGACGCCTGTATACTGGCGGCGGCGTCTGCGCTTGCGGACGTCC
AGTTGCCCGCCACCGCCTTAGACAAGGACGAGGAGGTCGTCATTTTGTCA
GATGGAAACTAGCAGACACCAGGTCGAGACGGACGCCCTAAGCTACGCAC
AGTTTGACTCGGCGACATATCTGGCCAACCTGGTCAAGGCTGGTGTGCGC
CAAGATGGCCGGAGTCTGACGGGCTTGCGGCCGCTGTCATTACTACAAGG
CATCCTGCAGGGGACCACCGCGGGCTCCGCTTTGGTCAAGATTGGGGGCA
CCAAGGTTGTGGCAGGCGTCACCTTGCTTGTAGGCCAGCCAGCTGAAGAC
ACGCCGTCCAAAGGAGAAATCGACACTCCACCCCGGCCATTGGAGATGAC
CCGCTTTCCCGTTCCCCTCACCATCGGCCTTCACTCTGACAAGTTCCTCT
GCGACCTCTCCCTGACAGAAGAAGAGCGCATGCCCACACAAATGACTTTA
GTGCTCGACGCGGAGAATGGGCACTTGTGTTCGGCGCAGAAAGCCGGGGG
TGCATCCATGGCCTCCGAGCAGCTTGCCCGTGCCTTTGCCTTATGCAGTG
CACGGCAGAAACAGGTCACACGTGCTCGCGGCCAACAAAAACCGAGATCC
TTGTGAGTGTGGAGGTACATCTACCGCCGATGTGTCATCCTAAATACACG
TCAATCCAGATCCAGCAAGAGGAAGGCAAGGCCCTCGAGACGTTCGTGCA
AAATGTGTTGCTCAAATGCGGCGTCGTGCGACGCGAAGACCTGCGTATCT
CGGAGGGTCGTCATGTCTGGAAGCTTAATGTGGACATTCAGTGCCTGAGC
CATGAAGGGAGCTTGGGGGACGCCTGTATACTGGCGGCGGCGTCTGCGCT
TGCGGACGTCCAGTTGCCCGCCACCGCCTTAGACAAGGACGAGGAGGTCG
TCATTTTGTCAGATGGAAACTAGCAGACACCAGGTCGAGACGGACGCCCT
AAGCTACGCACAGTTTGACTCGGCGACATATCTGGCCAACCTGGTCAAGG
CTGGTGTGCGCCAAGATGGCCGGAGTCTGACGGGCTTGCGGCCGCTGTCA
TTACTACAAGGCATCCTGCAGGGGACCACCGCGGGCTCCGCTTTGGTCAA
GATTGGGGGCACCAAGGTTGTGGCAGGCGTCACCTTGCTTGTAGGCCAGC
CAGCTGAAGACACGCCGTCCAAAGGAGAAATCG
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Synonyms
Publications