jgi.p|Nanoce1779_2|576368, mRNA_149 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576368
Unique Name	mRNA_149
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1501
Alignment location	scaffold_3:385883..387936 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576454
Track	FilteredModels2
ProteinId	576368

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:385883..387936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576368	gene_149	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576368	mRNA_149-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_149	CDS_149	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:385883..387936+
coding sequence from alignment at scaffold_3:385883..387936+

mRNA sequence

>mRNA_149 ID=mRNA_149|Name=jgi.p|Nanoce1779_2|576368|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
GAAGAAAGTGTGCCACGGAATGCAGGTACAAAGGTGCCCGTCTTGGCTGC
GTGCGAGCATAGACAGAGCGTCGTCGGCGAGGACAGTTGTTTCCTTGTAG
TTGTAGTCCCACCACGCCTGCGGATGCCTTTTAGTACTCAACACCAAACC
ATCCACCACAACAGGCTATCGACTGGCTGGCATTGCTGGTGCCGAGTTAG
CCACCCTGCTATAGCGGGGCGGCTCAGTCTCCCAAGGCCAACAACACCAA
CACACGAACACAGTCTCCTATTAGCCACAAACCTGTTTCCACTTTCAATC
GCACTTCCAACAAAAAGCAGAAATGACCCGACAAGAGTATGTGCCAATCA
AGGCCATTTGCGAGGAACTGACGAGTTATGGATTCTCATACAAATTTGGC
GGCTCGAGTCCGATAATACAGCCCTGGAAGCTCAGCGAGGGCAAGGCTAA
AAAGGTGGGACTCCTGTTAGAAGGCGAGAAGGCCATCCGCAAGTTCTGGG
AGGAGCACGTCCGTCCGAAACTGTCCGACGAGTTTTACAAGCGCCGCAAC
GTCGACTGTATCTTGTGGGTGGATGAGGCACGCAAGATACTGGGTTTTGA
AGGGCCCGAATACAAGGACCGATTTGCGAAAGTTCGCCGCTTCAACCAGA
TACATGCGGCCAAGACCACAGCTCCGGACAATGTTGTAGGCGCACCGGAA
GTACTGACGAAAGGAGCAGTAACTTCGACGACAGCTGTACACGGAGGTTC
TCCTCCGTCAGGAGTGGAATCGGATTCAGGAGGAGTGCCGAGATCAGGAG
CAGGACCAAAAAAGCGCAAGAATAGCAACTGCAGCAGTAGCACCAGCGCT
AGCGGGCTTCGCAGCTACGGCATTGACGAGGATCCGCAGAAGAAGACGAG
TGAGAAGAAGAGGCGAGTGCCAGAATCGGACGATGGTTTGATTCACTACA
CGGACTTGCTTCGAAAGTACCCAGCAGAAAACACATTTTCTAACTTTTCC
AATGCTGCCGGCTCCTTGTCGGAGTGTCTCCCCACGATGACGTACAACCA
CCAGTTGCACACATGGGCGTCCGCGTCCTCGTCCTCCTCGTCTTCCAGCA
AGCCCAACAATATTCGCAACGCCCCATGGATCCACGTCAAGGAACAAGCG
GAACTCTTCGAATCTCTCTACGCGCGTGTGTCTACTTTGAGCGACAGCGA
ATTGCGGCAAGCATCCGATTTGCTTCGACGTGGAAACCCTCAAATGATCG
GATTGGTCAAGGCTTACGTGGGCAAGGAGGCGGACGAGGCTAGCAAGAAG
CAGTTCCGGCGGGTCTTAATGACACTTTTGGGATAAAATTGAAGCTGAAT
GAATGAAAAAGAAAGGAGAAAAAGTAAAAAAAATGACGTTTGAGTGTTGT
CCGGGAAAATATTTTTTCACTAATGAAAAAGATAAAATCAAACCACATAC
AGAAACTGTAAATAATAAATGGAAAGAAATACAGCGCAAACAAAATACGT
G

protein sequence of jgi.p|Nanoce1779_2|576368

>mRNA_149-protein ID=mRNA_149-protein|Name=jgi.p|Nanoce1779_2|576368|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MTRQEYVPIKAICEELTSYGFSYKFGGSSPIIQPWKLSEGKAKKVGLLLE
GEKAIRKFWEEHVRPKLSDEFYKRRNVDCILWVDEARKILGFEGPEYKDR
FAKVRRFNQIHAAKTTAPDNVVGAPEVLTKGAVTSTTAVHGGSPPSGVES
DSGGVPRSGAGPKKRKNSNCSSSTSASGLRSYGIDEDPQKKTSEKKRRVP
ESDDGLIHYTDLLRKYPAENTFSNFSNAAGSLSECLPTMTYNHQLHTWAS
ASSSSSSSSKPNNIRNAPWIHVKEQAELFESLYARVSTLSDSELRQASDL
LRRGNPQMIGLVKAYVGKEADEASKKQFRRVLMTLLG*

mRNA from alignment at scaffold_3:385883..387936+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_149 ID=mRNA_149|Name=jgi.p|Nanoce1779_2|576368|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp|location=Sequence derived from alignment at scaffold_3:385883..387936+ (Nannochloropsis oceanica)
GAAGAAAGTGTGCCACGGAATGCAGGTACAAAGGTGCCCGTCTTGGCTGC
GTGCGAGCATAGACAGAGCGTCGTCGGCGAGGACAGTTGTTTCCTTGTAG
TTGTAGTCCCACCACGCCTGCGGATGCCTTTTAGTACTCAACACCAAACC
ATCCACCACAACAGGCTATCGACTGGCTGGCATTGCTGGTGCCGAGTTAG
CCACCCTGCTATAGCGGGGCGGCTCAGTCTCCCAAGGCCAACAACACCAA
CACACGAACACAGTCTCCTATTAGCCACAAACCTGTTTCCACTTTCAATC
GCACTTCCAACAAAAAGCAGAAATGACCCGACAAGAGGTAAATCGCCGCG
AGCTTGAGGGATATTCTTTGGTGCTTCTAGTCGGCGTCTATCGTCCGCGA
TCGGTGATATGGACGTGAATTTTCTGTCTCCAACCCAGCCAGTGTTACAA
GGCTAGGCAATCGTCGCGGTTTGTAATCGGAATTTACATCACAACAATGT
TTGAAGTCTGACCTGCGCATTTTCTCCACTAGTAAGAGAAGCGCTGCAGT
CTCAGATGGTTGACACTCTGTCTTTAATTCCTACCCATACCGTATCACAC
AGTATGTGCCAATCAAGGCCATTTGCGAGGAACTGACGAGTTATGGATTC
TCATACAAATTTGGCGGCTCGAGTCCGATAATACAGCCCTGGAAGCTCAG
CGAGGGCAAGGCTAAAAAGGTGGGACTCCTGTTAGAAGGCGAGAAGGCCA
TCCGCAAGTTCTGGGAGGAGCACGTCCGTCCGAAACTGTCCGACGAGTTT
TACAAGTACGTTTCACCTTTATCGATTGCTCTCGCTCAGTAAATGAATAG
AAGAAATTTTCAATCCTTAATATGGGATAACACCCCTTTCCCACTTTCTC
ATCCCCCAACCGCTTGCGCGTAACGCGCTCACACAGGCGCCGCAACGTCG
ACTGTATCTTGTGGGTGGATGAGGCACGCAAGATACTGGGTTTTGAAGGG
CCCGAATACAAGGACCGATTTGCGAAAGTTCGCCGCTTCAACCAGATACA
TGCGGCCAAGACCACAGCTCCGGACAATGTTGTAGGCGCACCGGAAGTAC
TGACGAAAGGAGCAGTAACTTCGACGACAGCTGTACACGGAGGTTCTCCT
CCGTCAGGAGTGGAATCGGATTCAGGAGGAGTGCCGAGATCAGGAGCAGG
ACCAAAAAAGCGCAAGAATAGCAACTGCAGCAGTAGCACCAGCGCTAGCG
GGCTTCGCAGCTACGGCATTGACGAGGATCCGCAGAAGAAGACGAGTGAG
AAGAAGAGGCGAGTGCCAGAATCGGACGATGGTTTGATTCACTACACGGA
CTTGCTTCGAAAGTACCCAGCAGAAAACACATTTTCTAACTTTTCCAATG
CTGCCGGCTCCTTGTCGGAGTGTCTCCCCACGATGACGTACAACCACCAG
TTGCACACATGGGCGTCCGCGTCCTCGTCCTCCTCGTCTTCCAGCAAGCC
CAACAATATTCGCAACGCCCCATGGATCCACGTCAAGGCAAGTGATTCGA
AAAAATACTTATAGATAGTTGAAAGCACTTATCACTTTATATCAACAAAA
AGGGCTCAGAATCAATTTCTCCTTTTGATCTTCCCAGTCCTCTTCGGCAT
TTTCTGCTCACTCACCTTCGTATGTCCTCTTTGACCATTAACAGGAACAA
GCGGAACTCTTCGAATCTCTCTACGCGCGTGTGTCTACTTTGAGCGACAG
CGAATTGCGGCAAGCATCCGATTTGCTTCGACGTGGAAACCCTCAAATGA
TCGGATTGGTCAAGGCTTACGTGGGCAAGGAGGCGGACGAGGCTAGCAAG
AAGCAGTTCCGGCGGGTCTTAATGACACTTTTGGGATAAAATTGAAGCTG
AATGAATGAAAAAGAAAGGAGAAAAAGTAAAAAAAATGACGTTTGAGTGT
TGTCCGGGAAAATATTTTTTCACTAATGAAAAAGATAAAATCAAACCACA
TACAGAAACTGTAAATAATAAATGGAAAGAAATACAGCGCAAACAAAATA
CGTG

Coding sequence (CDS) from alignment at scaffold_3:385883..387936+

>mRNA_149 ID=mRNA_149|Name=jgi.p|Nanoce1779_2|576368|organism=Nannochloropsis oceanica|type=CDS|length=4056bp|location=Sequence derived from alignment at scaffold_3:385883..387936+ (Nannochloropsis oceanica)
ATGACCCGACAAGAGTATGTGCCAATCAAGGCCATTTGCGAGGAACTGAC
GAGTTATGGATTCTCATACAAATTTGGCGGCTCGAGTCCGATAATACAGC
CCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGTGGGACTCCTGTTAGAA
GGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGCACGTCCGTCCGAAACT
GTCCGACGAGTTTTACAAGCGCCGCAACGTCGACTGTATCTTGTGGGTGG
ATGAGGCACGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCGA
TTTGCGAAAGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAGC
TCCGGACAATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTAA
CTTCGACGACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATCG
GATTCAGGAGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGAA
TAGCAACTGCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGCA
TTGACGAGGATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCCA
GAATCGGACGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACCC
AGCAGAAAACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCGG
AGTGTCTCCCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTCC
GCGTCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACGC
CCCATGGATCCACGTCAAGGAACAAGCGGAACTCTTCGAATCTCTCTACG
CGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGATTTG
CTTCGACGTGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACGTGGG
CAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTAATGA
CACTTTTGGGATAAATGACCCGACAAGAGTATGTGCCAATCAAGGCCATT
TGCGAGGAACTGACGAGTTATGGATTCTCATACAAATTTGGCGGCTCGAG
TCCGATAATACAGCCCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGTGG
GACTCCTGTTAGAAGGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGCAC
GTCCGTCCGAAACTGTCCGACGAGTTTTACAAGCGCCGCAACGTCGACTG
TATCTTGTGGGTGGATGAGGCACGCAAGATACTGGGTTTTGAAGGGCCCG
AATACAAGGACCGATTTGCGAAAGTTCGCCGCTTCAACCAGATACATGCG
GCCAAGACCACAGCTCCGGACAATGTTGTAGGCGCACCGGAAGTACTGAC
GAAAGGAGCAGTAACTTCGACGACAGCTGTACACGGAGGTTCTCCTCCGT
CAGGAGTGGAATCGGATTCAGGAGGAGTGCCGAGATCAGGAGCAGGACCA
AAAAAGCGCAAGAATAGCAACTGCAGCAGTAGCACCAGCGCTAGCGGGCT
TCGCAGCTACGGCATTGACGAGGATCCGCAGAAGAAGACGAGTGAGAAGA
AGAGGCGAGTGCCAGAATCGGACGATGGTTTGATTCACTACACGGACTTG
CTTCGAAAGTACCCAGCAGAAAACACATTTTCTAACTTTTCCAATGCTGC
CGGCTCCTTGTCGGAGTGTCTCCCCACGATGACGTACAACCACCAGTTGC
ACACATGGGCGTCCGCGTCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAAC
AATATTCGCAACGCCCCATGGATCCACGTCAAGGAACAAGCGGAACTCTT
CGAATCTCTCTACGCGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGC
AAGCATCCGATTTGCTTCGACGTGGAAACCCTCAAATGATCGGATTGGTC
AAGGCTTACGTGGGCAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCG
GCGGGTCTTAATGACACTTTTGGGATAAATGACCCGACAAGAGTATGTGC
CAATCAAGGCCATTTGCGAGGAACTGACGAGTTATGGATTCTCATACAAA
TTTGGCGGCTCGAGTCCGATAATACAGCCCTGGAAGCTCAGCGAGGGCAA
GGCTAAAAAGGTGGGACTCCTGTTAGAAGGCGAGAAGGCCATCCGCAAGT
TCTGGGAGGAGCACGTCCGTCCGAAACTGTCCGACGAGTTTTACAAGCGC
CGCAACGTCGACTGTATCTTGTGGGTGGATGAGGCACGCAAGATACTGGG
TTTTGAAGGGCCCGAATACAAGGACCGATTTGCGAAAGTTCGCCGCTTCA
ACCAGATACATGCGGCCAAGACCACAGCTCCGGACAATGTTGTAGGCGCA
CCGGAAGTACTGACGAAAGGAGCAGTAACTTCGACGACAGCTGTACACGG
AGGTTCTCCTCCGTCAGGAGTGGAATCGGATTCAGGAGGAGTGCCGAGAT
CAGGAGCAGGACCAAAAAAGCGCAAGAATAGCAACTGCAGCAGTAGCACC
AGCGCTAGCGGGCTTCGCAGCTACGGCATTGACGAGGATCCGCAGAAGAA
GACGAGTGAGAAGAAGAGGCGAGTGCCAGAATCGGACGATGGTTTGATTC
ACTACACGGACTTGCTTCGAAAGTACCCAGCAGAAAACACATTTTCTAAC
TTTTCCAATGCTGCCGGCTCCTTGTCGGAGTGTCTCCCCACGATGACGTA
CAACCACCAGTTGCACACATGGGCGTCCGCGTCCTCGTCCTCCTCGTCTT
CCAGCAAGCCCAACAATATTCGCAACGCCCCATGGATCCACGTCAAGGAA
CAAGCGGAACTCTTCGAATCTCTCTACGCGCGTGTGTCTACTTTGAGCGA
CAGCGAATTGCGGCAAGCATCCGATTTGCTTCGACGTGGAAACCCTCAAA
TGATCGGATTGGTCAAGGCTTACGTGGGCAAGGAGGCGGACGAGGCTAGC
AAGAAGCAGTTCCGGCGGGTCTTAATGACACTTTTGGGATAAATGACCCG
ACAAGAGTATGTGCCAATCAAGGCCATTTGCGAGGAACTGACGAGTTATG
GATTCTCATACAAATTTGGCGGCTCGAGTCCGATAATACAGCCCTGGAAG
CTCAGCGAGGGCAAGGCTAAAAAGGTGGGACTCCTGTTAGAAGGCGAGAA
GGCCATCCGCAAGTTCTGGGAGGAGCACGTCCGTCCGAAACTGTCCGACG
AGTTTTACAAGCGCCGCAACGTCGACTGTATCTTGTGGGTGGATGAGGCA
CGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCGATTTGCGAA
AGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAGCTCCGGACA
ATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTAACTTCGACG
ACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATCGGATTCAGG
AGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGAATAGCAACT
GCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGCATTGACGAG
GATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCCAGAATCGGA
CGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACCCAGCAGAAA
ACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCGGAGTGTCTC
CCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTCCGCGTCCTC
GTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACGCCCCATGGA
TCCACGTCAAGGAACAAGCGGAACTCTTCGAATCTCTCTACGCGCGTGTG
TCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGATTTGCTTCGACG
TGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACGTGGGCAAGGAGG
CGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTAATGACACTTTTG
GGATAA

Synonyms

Publications