jgi.p|Nanoce1779_2|572378, mRNA_1489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572378
Unique NamemRNA_1489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_1:757197..758404 +

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Properties
Property NameValue
TranscriptId572464
TrackFilteredModels2
ProteinId572378
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:757197..758404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572378gene_1489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572378mRNA_1489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1489CDS_1489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1489 ID=mRNA_1489|Name=jgi.p|Nanoce1779_2|572378|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
AGCCATGAACAGCCACCAGCATGGGTCCAGGACGAGCAGCAACGCCCGCG
CCACCCGATTCGAGGATTGCTTCCGAATCTATCACGAGGTAGAGGACGTG
GGCAAGACGGTCAAGGCTACCAAACGCCGAGCACGCTGGACATTCTCATT
CGGTGAAAAAGGACAGGAGAGCGAGGTGGTTCTAGTGCACTCGGTCGTGT
CGGGCAAAAAAGTTATCACCTACAATGGCCATCAAATCCACCACTCTGAC
GATATGAGTCGTTCCTTTAGCCATTCCTGGTTTGAGGGGAATCATGCTCT
TCGCGTGGACATCACGGATATAGTGGAGGTGGGCCGCGGGCGGAGCGACA
AGATGTATGAGCTAACGGTATGTTATTGTTTTCATCCCGTAAAGTGTGTG
TATTGCGAGATTGCATCGTTTCAGATCATATAGTCATCCAAGTGACTCAA
ATCCCTTGTGTTTACTTGAAACAACAGTTGGACGGTGTTCCATTCGGCGT
GCTTCCCTTGAAGCCCGTTCACCTGCCAAGTCGCCGCGCCGAGTTCGACC
GTCGAGACCTCTCTTCATCTACCACCCGCCCTACGGGCTCTCTGCGTGAG
AACGACAGCTTTGAGGCCTCCGATGATTTTAATCCTCGAGCAACCACCAG
CTATAGCAACAGTAAGCCTCGAGCTGTCATGAAAGCGGGGATCACTACCT
CCCTCCCATTTACCATGAATGCCGCGCCCGTGGTGGATCTGTTGGGAGTT
GGAGGGGAGGATTTTACG
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protein sequence of jgi.p|Nanoce1779_2|572378

>mRNA_1489-protein ID=mRNA_1489-protein|Name=jgi.p|Nanoce1779_2|572378|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MNSHQHGSRTSSNARATRFEDCFRIYHEVEDVGKTVKATKRRARWTFSFG
EKGQESEVVLVHSVVSGKKVITYNGHQIHHSDDMSRSFSHSWFEGNHALR
VDITDIVEVGRGRSDKMYELTVCYCFHPVKCVYCEIASFQII*
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mRNA from alignment at scaffold_1:757197..758404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1489 ID=mRNA_1489|Name=jgi.p|Nanoce1779_2|572378|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp|location=Sequence derived from alignment at scaffold_1:757197..758404+ (Nannochloropsis oceanica)
AGCCATGAACAGCCACCAGCATGGGTCCAGGACGAGCAGCAACGCCCGCG
CCACCCGATTCGGTAAGCAGATTTAAGCATGGGCGGGTTTGTTGCTGTAT
TGCCCACCGGCGGGACAGGACACCCGTCCTCGTGGGAACTCATGGGAAGC
AACAATTAGTAGATGTAATGCTTGTGTTGGTGAATGGAGCACCATCCCTT
CTCGTCTTCCGGCGCGTTTTCAACCCTGGGGAGGGGAAAGACCGATGGTC
TGACCAGCTCCCCCTACCGTCATCGAACAGATGACACACCCTGATTACCC
ACCCGCCCACATTTCTATACACACGCGATTGACAGAGGATTGCTTCCGAA
TCTATCACGAGGTAGAGGACGTGGGCAAGACGGTCAAGGCTACCAAACGC
CGAGCACGCTGGACATTCTCATTCGGTGAAAAAGGACAGGAGAGCGTAAG
TGTCTAGAGAATAGCAGCTATGGTGCTCTCTCGCGTCCAGCACACAGAAC
ACGCGCCACCTTCTTGAACAAATGCACTCACTAGCGATGTAAAGCAAATG
TTTTTTTTAACTGAGCTTATAATTCTTGATTCTTTCCCATACGCCCTCCT
AACCGCTCACAGGAGGTGGTTCTAGTGCACTCGGTCGTGTCGGGCAAAAA
AGTTATCACCTACAATGGCCATCAAATCCACCACTCTGACGATATGAGTC
GTTCCTTTAGCCATTCCTGGTTTGAGGGGAATCATGCTCTTCGCGTGGAC
ATCACGGATATAGTGGAGGTGGGCCGCGGGCGGAGCGACAAGATGTATGA
GCTAACGGTATGTTATTGTTTTCATCCCGTAAAGTGTGTGTATTGCGAGA
TTGCATCGTTTCAGATCATATAGTCATCCAAGTGACTCAAATCCCTTGTG
TTTACTTGAAACAACAGTTGGACGGTGTTCCATTCGGCGTGCTTCCCTTG
AAGCCCGTTCACCTGCCAAGTCGCCGCGCCGAGTTCGACCGTCGAGACCT
CTCTTCATCTACCACCCGCCCTACGGGCTCTCTGCGTGAGAACGACAGCT
TTGAGGCCTCCGATGATTTTAATCCTCGAGCAACCACCAGCTATAGCAAC
AGTAAGCCTCGAGCTGTCATGAAAGCGGGGATCACTACCTCCCTCCCATT
TACCATGAATGCCGCGCCCGTGGTGGATCTGTTGGGAGTTGGAGGGGAGG
ATTTTACG
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Coding sequence (CDS) from alignment at scaffold_1:757197..758404+

>mRNA_1489 ID=mRNA_1489|Name=jgi.p|Nanoce1779_2|572378|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_1:757197..758404+ (Nannochloropsis oceanica)
ATGAACAGCCACCAGCATGGGTCCAGGACGAGCAGCAACGCCCGCGCCAC
CCGATTCGAGGATTGCTTCCGAATCTATCACGAGGTAGAGGACGTGGGCA
AGACGGTCAAGGCTACCAAACGCCGAGCACGCTGGACATTCTCATTCGGT
GAAAAAGGACAGGAGAGCGAGGTGGTTCTAGTGCACTCGGTCGTGTCGGG
CAAAAAAGTTATCACCTACAATGGCCATCAAATCCACCACTCTGACGATA
TGAGTCGTTCCTTTAGCCATTCCTGGTTTGAGGGGAATCATGCTCTTCGC
GTGGACATCACGGATATAGTGGAGGTGGGCCGCGGGCGGAGCGACAAGAT
GTATGAGCTAACGGTATGTTATTGTTTTCATCCCGTAAAGTGTGTGTATT
GCGAGATTGCATCGTTTCAGATCATATAGATGAACAGCCACCAGCATGGG
TCCAGGACGAGCAGCAACGCCCGCGCCACCCGATTCGAGGATTGCTTCCG
AATCTATCACGAGGTAGAGGACGTGGGCAAGACGGTCAAGGCTACCAAAC
GCCGAGCACGCTGGACATTCTCATTCGGTGAAAAAGGACAGGAGAGCGAG
GTGGTTCTAGTGCACTCGGTCGTGTCGGGCAAAAAAGTTATCACCTACAA
TGGCCATCAAATCCACCACTCTGACGATATGAGTCGTTCCTTTAGCCATT
CCTGGTTTGAGGGGAATCATGCTCTTCGCGTGGACATCACGGATATAGTG
GAGGTGGGCCGCGGGCGGAGCGACAAGATGTATGAGCTAACGGTATGTTA
TTGTTTTCATCCCGTAAAGTGTGTGTATTGCGAGATTGCATCGTTTCAGA
TCATATAGATGAACAGCCACCAGCATGGGTCCAGGACGAGCAGCAACGCC
CGCGCCACCCGATTCGAGGATTGCTTCCGAATCTATCACGAGGTAGAGGA
CGTGGGCAAGACGGTCAAGGCTACCAAACGCCGAGCACGCTGGACATTCT
CATTCGGTGAAAAAGGACAGGAGAGCGAGGTGGTTCTAGTGCACTCGGTC
GTGTCGGGCAAAAAAGTTATCACCTACAATGGCCATCAAATCCACCACTC
TGACGATATGAGTCGTTCCTTTAGCCATTCCTGGTTTGAGGGGAATCATG
CTCTTCGCGTGGACATCACGGATATAGTGGAGGTGGGCCGCGGGCGGAGC
GACAAGATGTATGAGCTAACGGTATGTTATTGTTTTCATCCCGTAAAGTG
TGTGTATTGCGAGATTGCATCGTTTCAGATCATATAG
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Synonyms
Publications