jgi.p|Nanoce1779_2|572368, mRNA_1487 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572368
Unique NamemRNA_1487
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length911
Alignment locationscaffold_1:754730..755640 -

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Properties
Property NameValue
TranscriptId572454
TrackFilteredModels2
ProteinId572368
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:754730..755640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572368gene_1487Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572368mRNA_1487-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1487CDS_1487Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1487 ID=mRNA_1487|Name=jgi.p|Nanoce1779_2|572368|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
GGGGGGGTCCCTGCTCTTGGCCGTCGTTGTGGCCGTCGTTGTGGTCGTGG
TGAAGGCGACGTCGAAGGGGAGAGGCTTGGAAACTGTCTGGGCTGTCATC
CTCCTCCCGAGCCCTGCGCATGCTTCCCTGTATTTGTGTGAGCACGTTTG
TTGGTGTGGGTTGAGAGGATGGTGGTCGTGTGGGGGTAGGGAGGTAGGAA
GGGCAGAGGAACGTAAACCGGCAAGGTGAAACGCCACTCTGCAAAGGCTC
GAGTCTTGAAATCACAGGGAATGTAAAGAGAGGTACAAAACCTGATGAGG
ACGGTTGTATAGGATCTTCTTCTTCATGTTTTGTGTGCACGTGAAGACCG
CCGTCAAATTAGGGAGAAGCAAACGTGGACAGTTGGTAATTTTATGTTTT
TCTTTGTATTTTGGGGTGTGATCATATGGTAGTGTTGTTACCTTGTAGCT
TCTTATTTTCTACATCTTTGCTACTGGGGGTGTGTGTGCATTGGCCTTTC
CTTCATCTCTCGTACTACAGGGCAAGTGGCGGGTTGGTGTGTGGGAAAAG
CATAAAATTGAAAACCGTGAACATTTCCGTACGCAAAGTTCTTTTATTTA
GAGAGAATGTCTTCGCCGTTGAAGCCGTCCAACGTCTCCACCAAAAATCG
ATCCACGCTTTCTCCCAGCGCGATGTCGTCACGCGGCAGAAGAGAGGAGG
GGGAGGACGGGAGGAAGGATGGAAGGGAGGAGAAAAGCGGTTCTTGACAC
CACCAAGAGAATGAAAACGCACCCCTCTCTCCCTAGTCGTGTGATCCTTA
GTCAATCGGGCCGTTGCATTCAAAAATATATTCTCAAGTATAACCATAAA
ATTTTTGGAGTGTGTCTCTAGATAAAAGCGGTACAATTTAAGGGATTTCG
CGGGGGCCTGG
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protein sequence of jgi.p|Nanoce1779_2|572368

>mRNA_1487-protein ID=mRNA_1487-protein|Name=jgi.p|Nanoce1779_2|572368|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MVVLLPCSFLFSTSLLLGVCVHWPFLHLSYYRASGGLVCGKSIKLKTVNI
SVRKVLLFRENVFAVEAVQRLHQKSIHAFSQRDVVTRQKRGGGGREEGWK
GGEKRFLTPPRE*
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mRNA from alignment at scaffold_1:754730..755640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1487 ID=mRNA_1487|Name=jgi.p|Nanoce1779_2|572368|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_1:754730..755640- (Nannochloropsis oceanica)
GGGGGGGTCCCTGCTCTTGGCCGTCGTTGTGGCCGTCGTTGTGGTCGTGG
TGAAGGCGACGTCGAAGGGGAGAGGCTTGGAAACTGTCTGGGCTGTCATC
CTCCTCCCGAGCCCTGCGCATGCTTCCCTGTATTTGTGTGAGCACGTTTG
TTGGTGTGGGTTGAGAGGATGGTGGTCGTGTGGGGGTAGGGAGGTAGGAA
GGGCAGAGGAACGTAAACCGGCAAGGTGAAACGCCACTCTGCAAAGGCTC
GAGTCTTGAAATCACAGGGAATGTAAAGAGAGGTACAAAACCTGATGAGG
ACGGTTGTATAGGATCTTCTTCTTCATGTTTTGTGTGCACGTGAAGACCG
CCGTCAAATTAGGGAGAAGCAAACGTGGACAGTTGGTAATTTTATGTTTT
TCTTTGTATTTTGGGGTGTGATCATATGGTAGTGTTGTTACCTTGTAGCT
TCTTATTTTCTACATCTTTGCTACTGGGGGTGTGTGTGCATTGGCCTTTC
CTTCATCTCTCGTACTACAGGGCAAGTGGCGGGTTGGTGTGTGGGAAAAG
CATAAAATTGAAAACCGTGAACATTTCCGTACGCAAAGTTCTTTTATTTA
GAGAGAATGTCTTCGCCGTTGAAGCCGTCCAACGTCTCCACCAAAAATCG
ATCCACGCTTTCTCCCAGCGCGATGTCGTCACGCGGCAGAAGAGAGGAGG
GGGAGGACGGGAGGAAGGATGGAAGGGAGGAGAAAAGCGGTTCTTGACAC
CACCAAGAGAATGAAAACGCACCCCTCTCTCCCTAGTCGTGTGATCCTTA
GTCAATCGGGCCGTTGCATTCAAAAATATATTCTCAAGTATAACCATAAA
ATTTTTGGAGTGTGTCTCTAGATAAAAGCGGTACAATTTAAGGGATTTCG
CGGGGGCCTGG
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Coding sequence (CDS) from alignment at scaffold_1:754730..755640-

>mRNA_1487 ID=mRNA_1487|Name=jgi.p|Nanoce1779_2|572368|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_1:754730..755640- (Nannochloropsis oceanica)
ATGGTAGTGTTGTTACCTTGTAGCTTCTTATTTTCTACATCTTTGCTACT
GGGGGTGTGTGTGCATTGGCCTTTCCTTCATCTCTCGTACTACAGGGCAA
GTGGCGGGTTGGTGTGTGGGAAAAGCATAAAATTGAAAACCGTGAACATT
TCCGTACGCAAAGTTCTTTTATTTAGAGAGAATGTCTTCGCCGTTGAAGC
CGTCCAACGTCTCCACCAAAAATCGATCCACGCTTTCTCCCAGCGCGATG
TCGTCACGCGGCAGAAGAGAGGAGGGGGAGGACGGGAGGAAGGATGGAAG
GGAGGAGAAAAGCGGTTCTTGACACCACCAAGAGAATGA
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Synonyms
Publications