jgi.p|Nanoce1779_2|572362, mRNA_1486 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572362
Unique NamemRNA_1486
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length909
Alignment locationscaffold_1:753134..754280 +

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Properties
Property NameValue
TranscriptId572448
TrackFilteredModels2
ProteinId572362
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:753134..754280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572362gene_1486Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572362mRNA_1486-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1486CDS_1486Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Nanoce1779_2|572362|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
CGCCCCCAAAACCCCTGTCGGCACAACAATACGCATGCGCAGCACAGTTG
GGGGCTGTCTATCACGGAGTGGCTGGTGGTAGACAAAGAGGCAGAGGGGT
GGCCGATTTCACAGAGGCAAACACATACTTTAGTAGTACTCATCCCAACT
CATCCCCAGCCTCTCCCTAGCACGGCCTCTCGTTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGTTGCCCCTCT
CACAGCAGGAGCAGTATGGGGCGCTACTCAAGCGTGCAGGCATATGGCGA
TAACAATCCCAAGGTGGCCAGCGTGGCGTATGAGGGCGGTGGGGAGGAGG
GTACGGCCCAGCGCATCAAGACCGAGAAGCTTGAAAATGTGACGGGCAGT
ACGGCAGGGGCGAGCAGCAGCAGCTTTCATATCTATCGGGCCCATCGACG
CACAGAAATGAACAGATTGGAGGACCTTGACAGGAGGGAGACCGAGAAGC
AAGAGCAGGAAGCGTTTGAGCGGTCGTTGGAGCAGAAGCGGGTTCAGAGC
GAGGAGCGTACCCGGAGGCTAGCCGAGAAGCGCCGTCGCAAGAAGCAGGC
CATGAAGGAGAGGAAAAAGCAGTCGCCACAGGGACAGGTCCACGAGCAAG
ACATGAGCAGCGACGAGGACGAGCGCGATGAGGAGAAGTGGCGAGATGGC
AGCGCAAGCAAGAAGAGGAAGGGAGAGGCGGTTGACTGCCCCATGGTGAT
GCCCATCGTACAACTCAGGAACGACGGAAGTTTCTTGGAAACGATGCTGG
CGCTGCAAAAAGAGAAGGCGGGGAAAGTGAGAAAGGAGGGCAACGGAAGC
ACTGCACCGTGACTGAGTGAACTCAGGGAAAAGTAACAAATATGTACAGA
AGGATGAGA
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protein sequence of jgi.p|Nanoce1779_2|572362

>mRNA_1486-protein ID=mRNA_1486-protein|Name=jgi.p|Nanoce1779_2|572362|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MGRYSSVQAYGDNNPKVASVAYEGGGEEGTAQRIKTEKLENVTGSTAGAS
SSSFHIYRAHRRTEMNRLEDLDRRETEKQEQEAFERSLEQKRVQSEERTR
RLAEKRRRKKQAMKERKKQSPQGQVHEQDMSSDEDERDEEKWRDGSASKK
RKGEAVDCPMVMPIVQLRNDGSFLETMLALQKEKAGKVRKEGNGSTAP*
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mRNA from alignment at scaffold_1:753134..754280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Nanoce1779_2|572362|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at scaffold_1:753134..754280+ (Nannochloropsis oceanica)
CGCCCCCAAAACCCCTGTCGGCACAACAATACGCATGCGCAGCACAGTTG
GGGGCTGTCTATCACGGAGTGGCTGGTGGTAGACAAAGAGGCAGAGGGGT
GGCCGATTTCACAGAGGCAAACACATACTTTAGTAGTACTCATCCCAACT
CATCCCCAGCCTCTCCCTAGCACGGCCTCTCGTTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGTTGCCCCTCT
CACAGCAGGAGCAGTATGGGGCGCTACTCAAGCGTGCAGGCATATGGCGA
TAACAATCCCAAGGTGGCCAGCGTGGCGTATGAGGGCGGTGGGGAGGAGG
GTACGGCCCAGCGCATCAAGGTAATATGCATTGTGTCTCTCCTTCCCCCT
TTGCCCCTCCACGCTCCCCAAACCCACATTATGACTGATCACGAGCTCCT
TGTGCTAGCTTGTAACGCTTCTGTATGAGCAGTGTGCTTGTCCTAGCAGC
GCTGCTCTGCTTAAGAATAAGTCCACCATTTCACCTGTCCGACCTTCCAC
TCATAACCCTCATTCCACTCCTTCACGCCCTTCCCTCACCTTCACCCCCT
CTCGTCAGACCGAGAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCG
AGCAGCAGCAGCTTTCATATCTATCGGGCCCATCGACGCACAGAAATGAA
CAGATTGGAGGACCTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAG
CGTTTGAGCGGTCGTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACC
CGGAGGCTAGCCGAGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAG
GAAAAAGCAGTCGCCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCG
ACGAGGACGAGCGCGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAG
AAGAGGAAGGGAGAGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACA
ACTCAGGAACGACGGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAG
AGAAGGCGGGGAAAGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGA
CTGAGTGAACTCAGGGAAAAGTAACAAATATGTACAGAAGGATGAGA
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Coding sequence (CDS) from alignment at scaffold_1:753134..754280+

>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Nanoce1779_2|572362|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_1:753134..754280+ (Nannochloropsis oceanica)
ATGGGGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAGGT
GGCCAGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCGCA
TCAAGACCGAGAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGC
AGCAGCAGCTTTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAG
ATTGGAGGACCTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGT
TTGAGCGGTCGTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGG
AGGCTAGCCGAGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAA
AAAGCAGTCGCCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACG
AGGACGAGCGCGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAG
AGGAAGGGAGAGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACT
CAGGAACGACGGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGA
AGGCGGGGAAAGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGAATG
GGGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAGGTGGC
CAGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCGCATCA
AGACCGAGAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGCAGC
AGCAGCTTTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAGATT
GGAGGACCTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGTTTG
AGCGGTCGTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGGAGG
CTAGCCGAGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAAAAA
GCAGTCGCCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACGAGG
ACGAGCGCGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAGAGG
AAGGGAGAGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACTCAG
GAACGACGGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGAAGG
CGGGGAAAGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGA
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Synonyms
Publications