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Properties
| Property Name | Value |
|---|
| TranscriptId | 572444 |
| Track | FilteredModels2 |
| ProteinId | 572358 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:746710..748928 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1484 ID=mRNA_1484|Name=jgi.p|Nanoce1779_2|572358|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
AGGGGATAGGCAACGCAAGGCTAGCATCCAAAGCTCCTTGAGCCATACGT
AAAGTAAGTATCAAGTATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGG
CCGCTCGAGCATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACA
ACTCGCTCTTTCACGCGGACGGCTATGGTGGCGGCCAAGATCAAGGTGGA
AAACCCCGTGGTGGACCTTGACGGTGATGAGATGACGCGCGTGATCTGGA
AGCAGATCAAAGACAAACTCATCCTGCCCTACCTGGATCTGAAGATCGAA
TACTACGACCTTGGCCTGCCTAACCGCGATAAGACTAACGACCAGGTGAC
GGTAGACGCGGCAAACGCCATCAAGAAGTACAACGTGGGCATCAAGTGCG
CTACCATCACGCCAGATGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAG
ATGTGGCGCTCGCCCAACGGGACCATCCGTAACATTTTGAACGGAACGGT
CTTCCGTGAGCCCATCGTAATCTCCAACATTCCGCGAATCATTCCGGGCT
GGGTCAAGCCCATCGTTGTCGGCCGCCACGCCTTCGGAGACCAGTATCGC
GCCACGGATTTCATAGTAGACAAGCCTGGCAAATTTGAGATGACGTTTAC
TTCCACAGACGGCACGGAGAAGAAGAGCTGGAACGTGTACGACTTCAAGG
GCGCCGGCGTGGGTATGGCCATGTACAACACCGAGGAGTCCATCCGTGGC
TTCGCGCACTCGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTT
TTTGAGCACGAAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGG
ACATCTTCGAAGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCG
CAGGGCATCAGCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGT
ACTCAAGGGCGAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCG
ACGTGCAGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATG
ACCTCGGTCCTTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGC
GCATGGCACCGTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCA
CCAGCACCAATCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAG
CACCGCGCCAAGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGA
TATGGAGTTGGCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGG
ATCTGGCCATCTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTT
ACCACGGACGCCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTA
CGACCACGTCACGTTGTAATCAACTGGCTTTTGGGGAATGGAGGGCCAAG
TCGGAAAGAGAAGCGGTGGGGGTGTGCCGCAGGATGATTGTACGGGGAGG
TGTACAAGGGAGAGGCACGTGCAAGACAAGGAGCCTGTACCTGTTACTTT
AGTTCGTCGAGGAAGGGAAGGAGAGGGAGAGTATATTTTCCGAACATTTT
GACCTTTTCACAGAAAAGCAGGCGCACAAGATCAGCTGTCTCTATAGCTG
TTTCTTGTCGGGCTGAAAGAGGTAAAAGAAAGAGAGAAAGAGTAAAGAAG
GAAATCGTATCCGTCAAATTT back to topprotein sequence of jgi.p|Nanoce1779_2|572358 >mRNA_1484-protein ID=mRNA_1484-protein|Name=jgi.p|Nanoce1779_2|572358|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MMRSAFLGSRAAARASSSTLSSLPLLVTTRSFTRTAMVAAKIKVENPVVD
LDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAAN
AIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPI
VISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGT
EKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKN
TILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEG
GVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVT
RHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAV
IKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYDNLYDHVTL
* back to topmRNA from alignment at scaffold_1:746710..748928+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1484 ID=mRNA_1484|Name=jgi.p|Nanoce1779_2|572358|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at scaffold_1:746710..748928+ (Nannochloropsis oceanica)
AGGGGATAGGCAACGCAAGGCTAGCATCCAAAGCTCCTTGAGCCATACGT
AAAGTAAGTATCAAGTATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGG
CCGCTCGAGCATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACA
ACTCGCTCTTGTAAGTAAAACGTTTGCATTGTAAGCCGGCATCGCATGTC
ATGGCCGTGGCTGCGGTCTTATCCGCTGTACGCCTCTCGCTGTCCTCTTC
CCCTCCCTATATCCTGGCTGTTCGAATCTCCAGCTTCCTTCCTCTTGCCG
CTTGTGTGTGTGTTGAACTCGGCTTCCAGCTCTGTGTGATTGCGTGTATG
AGGGTGCCTAGTCGCTCATTTTCCCTTGTCGCCATTTCTTTTCCCATTCT
TGTACCCCCCGGAAAACAGTCACGCGGACGGCTATGGTGGCGGCCAAGAT
CAAGGTGGAAAACCCCGTGGTGGACCTTGACGGTGATGAGATGACGCGCG
TGATCTGGAAGCAGATCAAAGACAAACTCATCCTGCCCTACCTGGATCTG
AAGATCGAATACTACGACCTTGGCCTGCCTAACCGCGATAAGACTAACGA
CCAGGTGACGGTAGACGCGGCAAACGCCATCAAGAAGTACAACGTGGGCA
TCAAGTGCGCTACCATCACGCCAGATGAGCAGCGGGTGGAGGAGTTCAAG
CTCAAAGAGATGTGGCGCTCGCCCAACGGGACCATCCGTAACATTTTGAA
CGGAACGGTCTTCCGTGAGCCCATCGTAATCTCCAACATTCCGCGAATCA
TTCCGGGCTGGGTCAAGCCCATCGTTGTCGGCCGCCACGCCTTCGGAGAC
CAGTATCGCGCCACGGATTTCATAGTAGACAAGCCTGGCAAATTTGAGAT
GACGTTTACTTCCACAGACGGCACGGAGAAGAAGAGCTGGAACGTGTACG
ACTTCAAGGGCGCCGGCGTGGGTATGGCCATGTACAACACCGAGGAGGTG
GGTGGGTGTGGTTGATTTCTCAATTTAGATTGTATCTTTGGTTGATTTCT
CGATATATAGTTTAAGGGGAGAAGTTTACATGTCTTGTTGTGTGTGTTGT
CTGTACCTTAATCCTCCAGTTGAGCTTCCTCGCTTGTATACTATCCGTTC
CTAATTGGTTACTGACTCATCAAACATCTCACATCAACACCCCACCGCTT
CTTTTTTTTTCTATCACACATCAACCCCACATTCAGTCCATCCGTGGCTT
CGCGCACTCGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTT
TGAGCACGAAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGAC
ATCTTCGAAGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCA
GGGCATCAGCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGTAC
TCAAGGGCGAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGAC
GTGCAGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGAC
CTCGGTCCTTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGC
ATGGCACCGTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACC
AGCACCAATCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCA
CCGCGCCAAGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGATA
TGGAGTTGGCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGAT
CTGGCCATCTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTTAC
CACGGACGCCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTACG
ACCACGTCACGTTGTAATCAACTGGCTTTTGGGGAATGGAGGGCCAAGTC
GGAAAGAGAAGCGGTGGGGGTGTGCCGCAGGATGATTGTACGGGGAGGTG
TACAAGGGAGAGGCACGTGCAAGACAAGGAGCCTGTACCTGTTACTTTAG
TTCGTCGAGGAAGGGAAGGAGAGGGAGAGTATATTTTCCGAACATTTTGA
CCTTTTCACAGAAAAGCAGGCGCACAAGATCAGCTGTCTCTATAGCTGTT
TCTTGTCGGGCTGAAAGAGGTAAAAGAAAGAGAGAAAGAGTAAAGAAGGA
AATCGTATCCGTCAAATTT back to topCoding sequence (CDS) from alignment at scaffold_1:746710..748928+ >mRNA_1484 ID=mRNA_1484|Name=jgi.p|Nanoce1779_2|572358|organism=Nannochloropsis oceanica|type=CDS|length=4059bp|location=Sequence derived from alignment at scaffold_1:746710..748928+ (Nannochloropsis oceanica)
ATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGGCCGCTCGAGCATCCTC
CTCGACGCTCTCTTCGCTACCTCTGCTGGTGACAACTCGCTCTTTCACGC
GGACGGCTATGGTGGCGGCCAAGATCAAGGTGGAAAACCCCGTGGTGGAC
CTTGACGGTGATGAGATGACGCGCGTGATCTGGAAGCAGATCAAAGACAA
ACTCATCCTGCCCTACCTGGATCTGAAGATCGAATACTACGACCTTGGCC
TGCCTAACCGCGATAAGACTAACGACCAGGTGACGGTAGACGCGGCAAAC
GCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCTACCATCACGCCAGA
TGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAGATGTGGCGCTCGCCCA
ACGGGACCATCCGTAACATTTTGAACGGAACGGTCTTCCGTGAGCCCATC
GTAATCTCCAACATTCCGCGAATCATTCCGGGCTGGGTCAAGCCCATCGT
TGTCGGCCGCCACGCCTTCGGAGACCAGTATCGCGCCACGGATTTCATAG
TAGACAAGCCTGGCAAATTTGAGATGACGTTTACTTCCACAGACGGCACG
GAGAAGAAGAGCTGGAACGTGTACGACTTCAAGGGCGCCGGCGTGGGTAT
GGCCATGTACAACACCGAGGAGTCCATCCGTGGCTTCGCGCACTCGTGCT
TTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTTTGAGCACGAAGAAC
ACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGACATCTTCGAAGAGAT
CTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCAGGGCATCAGCTACA
CGCACCGCTTGATCGACGACATGGTTGCGCAGGTACTCAAGGGCGAGGGC
GGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGACGTGCAGTCCGACAT
CGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGACCTCGGTCCTTATCA
CGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGCATGGCACCGTCACC
CGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACCAGCACCAATCCCAT
CGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCACCGCGCCAAGCTGG
ACAACAACACGGACCTGTCCAAATTCGCGCTGGATATGGAGTTGGCCGTG
ATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGATCTGGCCATCTGCGT
GCATGGATGGACCGTCAGCCCCGACAAGTACCTTACCACGGACGCCTTCC
TGGATAAGGTCAAGCTCACTTACGACAACCTTTACGACCACGTCACGTTG
TAAATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGGCCGCTCGAGCATC
CTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACAACTCGCTCTTTCA
CGCGGACGGCTATGGTGGCGGCCAAGATCAAGGTGGAAAACCCCGTGGTG
GACCTTGACGGTGATGAGATGACGCGCGTGATCTGGAAGCAGATCAAAGA
CAAACTCATCCTGCCCTACCTGGATCTGAAGATCGAATACTACGACCTTG
GCCTGCCTAACCGCGATAAGACTAACGACCAGGTGACGGTAGACGCGGCA
AACGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCTACCATCACGCC
AGATGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAGATGTGGCGCTCGC
CCAACGGGACCATCCGTAACATTTTGAACGGAACGGTCTTCCGTGAGCCC
ATCGTAATCTCCAACATTCCGCGAATCATTCCGGGCTGGGTCAAGCCCAT
CGTTGTCGGCCGCCACGCCTTCGGAGACCAGTATCGCGCCACGGATTTCA
TAGTAGACAAGCCTGGCAAATTTGAGATGACGTTTACTTCCACAGACGGC
ACGGAGAAGAAGAGCTGGAACGTGTACGACTTCAAGGGCGCCGGCGTGGG
TATGGCCATGTACAACACCGAGGAGTCCATCCGTGGCTTCGCGCACTCGT
GCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTTTGAGCACGAAG
AACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGACATCTTCGAAGA
GATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCAGGGCATCAGCT
ACACGCACCGCTTGATCGACGACATGGTTGCGCAGGTACTCAAGGGCGAG
GGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGACGTGCAGTCCGA
CATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGACCTCGGTCCTTA
TCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGCATGGCACCGTC
ACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACCAGCACCAATCC
CATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCACCGCGCCAAGC
TGGACAACAACACGGACCTGTCCAAATTCGCGCTGGATATGGAGTTGGCC
GTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGATCTGGCCATCTG
CGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTTACCACGGACGCCT
TCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTACGACCACGTCACG
TTGTAAATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGGCCGCTCGAGC
ATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACAACTCGCTCTT
TCACGCGGACGGCTATGGTGGCGGCCAAGATCAAGGTGGAAAACCCCGTG
GTGGACCTTGACGGTGATGAGATGACGCGCGTGATCTGGAAGCAGATCAA
AGACAAACTCATCCTGCCCTACCTGGATCTGAAGATCGAATACTACGACC
TTGGCCTGCCTAACCGCGATAAGACTAACGACCAGGTGACGGTAGACGCG
GCAAACGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCTACCATCAC
GCCAGATGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAGATGTGGCGCT
CGCCCAACGGGACCATCCGTAACATTTTGAACGGAACGGTCTTCCGTGAG
CCCATCGTAATCTCCAACATTCCGCGAATCATTCCGGGCTGGGTCAAGCC
CATCGTTGTCGGCCGCCACGCCTTCGGAGACCAGTATCGCGCCACGGATT
TCATAGTAGACAAGCCTGGCAAATTTGAGATGACGTTTACTTCCACAGAC
GGCACGGAGAAGAAGAGCTGGAACGTGTACGACTTCAAGGGCGCCGGCGT
GGGTATGGCCATGTACAACACCGAGGAGTCCATCCGTGGCTTCGCGCACT
CGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTTTGAGCACG
AAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGACATCTTCGA
AGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCAGGGCATCA
GCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGTACTCAAGGGC
GAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGACGTGCAGTC
CGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGACCTCGGTCC
TTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGCATGGCACC
GTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACCAGCACCAA
TCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCACCGCGCCA
AGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGATATGGAGTTG
GCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGATCTGGCCAT
CTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTTACCACGGACG
CCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTACGACCACGTC
ACGTTGTAA back to top
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