|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 572440 |
| Track | FilteredModels2 |
| ProteinId | 572354 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:744105..746241 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1483 ID=mRNA_1483|Name=jgi.p|Nanoce1779_2|572354|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCATTCCTTCC
TCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACTTGTTCGG
TCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCCAGCAAAT
TGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAGGGCTCGG
GGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCGGTTGGCC
GACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCTCCCTTCT
TAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTGATTTACG
CGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGATCTGAAG
CGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAGTCAAGTC
GTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCGCACCGGG
TGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCGCCATGGA
TGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATGTGCCACT
GCGGCAGTATACGAGGGAGGTGGTGACGTTGTGGTACCGGGCGCCCGAGA
TTCTGCTTGGGGCCGAGCACTACTCCACCCCTGTGGACACGTGGTCCATC
GGCTGCATATTTGCGGAAATGTTGAATAAGGAGCCTCTCTTTCCGGGGGA
CTCGGAGATCGATGAGCTCTTTCGCATCTTCAGGACGCTTGGCACGCCGG
ACGACGACATGTGGCCCAAGGTTTCGGAGCTACCCAACTACAAGACACAA
TTCCCCAAATGGAGACGGCAGCCGCTCGGCATGAGCGTGGCCCGCCTCTG
CTCCACTGGAATAGATCTCCTTTCGCGGCTTCTGACGTACGAGCCGACGG
CCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTGCGGATTTG
GTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCAACAAATCT
TGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCACCATAAGT
AATTATGATGAGTCATATCTTCTTTACTTTGCTTGTGTCGAATGCTCCCT
GCCGGCGCCATGATTTTACGTGCACCACGTCTTCTGCCTTCATCACATTG
CCGCCCGCACGAATCCCGCGGTTGCAAACACGCCCGAGAAGATGAACATG
AAGCGTCGATTTGCGTGATGCGGGGGCAAGGAGGCCCCTTGACTCCATGT
GTAGAGAGAGACGGCAAAGAGGGTCCCACTTCCGACGATTTTACACCCAA
GGCAGTCTGGATCCTGGGCGCGTTGTTGAGCTTCCCGTGGCAAGAGCCTT
TGGTCCTCTCCCGCTTTGTCCGCCATGCCTCTTTCCTATCACTAGTGTGG
CTGTAGCT back to topprotein sequence of jgi.p|Nanoce1779_2|572354 >mRNA_1483-protein ID=mRNA_1483-protein|Name=jgi.p|Nanoce1779_2|572354|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MDRFANIQQIGEGTYGVVYKGYMKGSGGSSSGELIALKQIRLADEDEGVP
STAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCK
TGLDPALVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRHGCLKLADF
GLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEM
LNKEPLFPGDSEIDELFRIFRTLGTPDDDMWPKVSELPNYKTQFPKWRRQ
PLGMSVARLCSTGIDLLSRLLTYEPTARITCREAKEHPYFADLVSRNDTV
* back to topmRNA from alignment at scaffold_1:744105..746241- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1483 ID=mRNA_1483|Name=jgi.p|Nanoce1779_2|572354|organism=Nannochloropsis oceanica|type=mRNA|length=2137bp|location=Sequence derived from alignment at scaffold_1:744105..746241- (Nannochloropsis oceanica)
ACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCATTCCTTCC
TCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACTTGTTCGG
TCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCCAGCAAAT
TGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAGGGCTCGG
GGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCGGTTGGCC
GACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCTCCCTTCT
TAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTGATTTACG
CGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGATCTGAAG
CGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAGTCAAGGT
GCGTTTCGGGTTGCGGGCTATGGGGAGTGGCTATGGCTTTCGCATAGATA
AAGGCTGTGTTTGATCTTCGTTTTTCCGCGTTGACTATTTTATGTATCAA
TGCATCTCCTGCACGTCCCCCCCTCTACCTCTTCTACAGTCGTACTTACA
CCAGATGATCCAGGGGGTTGCCTTCTGCCATTCGCACCGGGTGCTGCACC
GAGATCTCAAGCCCCAGAATCTGCTCATCGACCGCCATGGATGCCTTAAG
CTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATGTGCCACTGCGGCAGTA
TACGAGGGAGGTGAGAAAGTGGCACAGGAAGAGTGTAAGCCCTGTGAGGA
AGCCGTAGGAATTTGGGACAGAGAGGGGTGGTTGCGGTTTTGAGAGGGAA
AATACTGCAGGATTAAGGAATATACTTTAAGCGTCTTTCATCCTTTCTGT
TTCTTTTTGCCCCCTTCCCCCCCACACATGTAAGGTGGTGACGTTGTGGT
ACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTACTCCACCCCTGTG
GACACGTGGTCCATCGGCTGCATATTTGCGGAAATGTTGAATAAGGAGCC
TCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTTCGCATCTTCAGGT
AATAGGTGGATGAAGGCGGGGGGCTGTTCGTGTAGGTCCCAGGTTTGAGG
CGGGCTCTACGCACTCACTTTCTGCTCCATTCTTCTCTCTATCTCGCCTA
GGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTCGGAGCTA
CCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGCTCGGCAT
GAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCGGTGCGTG
ATTCAGATTGATTGAAAAGAGGGGGCAAGGGCCCATACGAATACCTTCAA
ACAGATCGTTAGAAATCATCTGGCGCGTCTCTTCTATAAATCGCCCACAC
ATTCTCCCTCTCCCTCCCAAAAACAGCGGCTTCTGACGTACGAGCCGACG
GCCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTGCGGATTT
GGTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCAACAAATC
TTGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCACCATAAG
TAATTATGATGAGTCATATCTTCTTTACTTTGCTTGTGTCGAATGCTCCC
TGCCGGCGCCATGATTTTACGTGCACCACGTCTTCTGCCTTCATCACATT
GCCGCCCGCACGAATCCCGCGGTTGCAAACACGCCCGAGAAGATGAACAT
GAAGCGTCGATTTGCGTGATGCGGGGGCAAGGAGGCCCCTTGACTCCATG
TGTAGAGAGAGACGGCAAAGAGGGTCCCACTTCCGACGATTTTACACCTC
AAGGGAAAATTTCATGAGGAGGGATAAAAATAAATCGCAGGAGAAAATGG
CCATGGATGGTTCTGTCAATAGAGTTTCTTCAAGCGTCACGCACTTCCCT
GCCTTCTCAGGATTCTCTTACTTACCCAAGGCAGTCTGGATCCTGGGCGC
GTTGTTGAGCTTCCCGTGGCAAGAGCCTTTGGTCCTCTCCCGCTTTGTCC
GCCATGCCTCTTTCCTATCACTAGTGTGGCTGTAGCT back to topCoding sequence (CDS) from alignment at scaffold_1:744105..746241- >mRNA_1483 ID=mRNA_1483|Name=jgi.p|Nanoce1779_2|572354|organism=Nannochloropsis oceanica|type=CDS|length=4515bp|location=Sequence derived from alignment at scaffold_1:744105..746241- (Nannochloropsis oceanica)
CGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAGGGAAGCCAA
GGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACACTGTGTAGG
ACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTCGGAGCTACC
CAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGCTCGGCATGA
GCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCGGTGGTGACG
TTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTACTCCAC
CCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATGTTGAATA
AGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTTCGCATC
TTCAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCG
CACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCG
CCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATG
TGCCACTGCGGCAGTATACGAGGGAGATGGACCGGTTCGCCAACATCCAG
CAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAGGG
CTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCGGT
TGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCTCC
CTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTGAT
TTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGATC
TGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAGTC
AAGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAGGGAAGC
CAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACACTGTGT
AGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTCGGAGCT
ACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGCTCGGCA
TGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCGGTGGTG
ACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTACTC
CACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATGTTGA
ATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTTCGC
ATCTTCAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCAT
TCGCACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGA
CCGCCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTA
ATGTGCCACTGCGGCAGTATACGAGGGAGATGGACCGGTTCGCCAACATC
CAGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAA
GGGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCC
GGTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATC
TCCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGT
GATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGG
ATCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTA
GTCAAGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAGGGA
AGCCAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACACTG
TGTAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTCGGA
GCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGCTCG
GCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCGGTG
GTGACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTA
CTCCACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATGT
TGAATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTT
CGCATCTTCAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGC
CATTCGCACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCAT
CGACCGCCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGT
TTAATGTGCCACTGCGGCAGTATACGAGGGAGATGGACCGGTTCGCCAAC
ATCCAGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACAT
GAAGGGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGA
TCCGGTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAA
ATCTCCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGA
TGTGATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACC
AGGATCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCC
TTAGTCAAGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAG
GGAAGCCAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACA
CTGTGTAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTC
GGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGC
TCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCG
GTGGTGACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCA
CTACTCCACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAA
TGTTGAATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTC
TTTCGCATCTTCAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTC
TGCCATTCGCACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCT
CATCGACCGCCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGG
CGTTTAATGTGCCACTGCGGCAGTATACGAGGGAGATGGACCGGTTCGCC
AACATCCAGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTA
CATGAAGGGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAAC
AGATCCGGTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGG
GAAATCTCCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAA
GGATGTGATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGG
ACCAGGATCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCC
GCCTTAGTCAAGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATG
CAGGGAAGCCAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATG
ACACTGTGTAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGT
TTCGGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGC
CGCTCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTT
TCGGTGGTGACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGA
GCACTACTCCACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGG
AAATGTTGAATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAG
CTCTTTCGCATCTTCAGTCGTACTTACACCAGATGATCCAGGGGGTTGCC
TTCTGCCATTCGCACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCT
GCTCATCGACCGCCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTC
GGGCGTTTAATGTGCCACTGCGGCAGTATACGAGGGAGATGGACCGGTTC
GCCAACATCCAGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGG
CTACATGAAGGGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGA
AACAGATCCGGTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATT
CGGGAAATCTCCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCT
TAAGGATGTGATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACC
TGGACCAGGATCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGAC
CCCGCCTTAGTCAAG back to top
|