jgi.p|Nanoce1779_2|8609, mRNA_1482 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|8609
Unique NamemRNA_1482
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_1:742361..743946 -

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Properties
Property NameValue
TranscriptId8695
TrackFilteredModels2
ProteinId8609
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:742361..743946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|8609gene_1482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|8609mRNA_1482-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1482CDS_1482Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Nanoce1779_2|8609|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
AACCAAGATTGTCCTCAAGGACCTTCAGGATGGCACAGGACAGACCAGAC
CAGCAGGAAGGAACAGGAGCGCCGACTTGCCTCACCGCGGGCGCCTTATA
ATAATAATCTGCAGCGGCATGATAGAGGCACCTAGCACATTGCCCGCGAT
GCCATCGGCATCAGCCGCCGCCGCAGCCGCGGAGGAGAAAGGCATGTAGC
AGCAGCAGCGGCAGCACGAAGAGGAGGAAGACGACGACAGCGCTGACAGA
GAATGGCACGAAGTGATGTTGCTGCCCCGGGATATTTTGTTTGAGTCTCC
GAGCCAACGCTTGGGCGTGCCTGAGGCGGTGGAACGTCGCCACCGCATTT
TTGACTGTGAACTCATCCAGGAGGCCGGCATCCTTTTCTGACCACCCCAA
GTTGTCATGGCCACAGTTCAAACGCTTTTCCATCAATTTCTCTACCGCCG
TGTATTCATCTCCGAAACAGCACAAACCCCCCCCGTCCTCCCTCCTTGGA
AAGCCCCCCATGCATACCTTTTTGATGCCTTCACCGCCGCAGTGGGCTGC
GTCCTCCTCACCTCCAAACTCGAGGAGAATCCCCTGGTCCCCCGCGACGT
CATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCT
CCTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTC
CTGACATTCGGAGAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAA
TGTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGG
GGGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGT
TTGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGC
TGCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGA
AGTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGA
CTCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTT
GCGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAG
GAGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGG
GCACGTAATATGGGCCACAGGGCACGTACCTTGTATTGAAAGAATGCCAA
AATTAAAGTACTGGCAATCATCAACTACTAGGATATCATTTGTGCGTGAC
AGCGACGATGTAGGTGGACGCCATATTATATCTTGCCTTTCAGGCCGCAC
A
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protein sequence of jgi.p|Nanoce1779_2|8609

>mRNA_1482-protein ID=mRNA_1482-protein|Name=jgi.p|Nanoce1779_2|8609|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MATVQTLFHQFLYRRVFISETAQTPPVLPPWKAPHAYLFDAFTAAVGCVL
LTSKLEENPLVPRDVMFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLT
FGEYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLR
LDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLS
RPETRQEKAYMPLPLRGICFRPLLPSNRQKRGENMEGGCSRKGTMGHWAR
NMGHRARTLY*
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mRNA from alignment at scaffold_1:742361..743946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Nanoce1779_2|8609|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at scaffold_1:742361..743946- (Nannochloropsis oceanica)
AACCAAGATTGTCCTCAAGGACCTTCAGGATGTGTGTTTGACCTGAATTG
TTTTTTGGTCTGGTGCGAGGAGAGGCAGGAGGCATCATGACAGACAACGA
CGAGCGAAGGCTTCCATGCATCGCAAGCGCTCCAATAGATAGAGTCTCTT
GTCCTGCCTCCTGCCTCCCTGTACCTAAGTATCACATCACACAGGCACTT
CCACTCATCTAGACAGCGATTTGTGCCATTTTTTCTCCCGGGTGGTCATC
TTAAAATCTTATCCAAAATCTCCCTTTCGACCTCTCCCCTCTTCCCCTCT
CTTCCTGCCCCACCAGGGCACAGGACAGACCAGACCAGCAGGAAGGAACA
GGAGCGCCGACTTGCCTCACCGCGGGCGCCTTATAATAATAATCTGCAGC
GGCATGATAGAGGCACCTAGCACATTGCCCGCGATGCCATCGGCATCAGC
CGCCGCCGCAGCCGCGGAGGAGAAAGGCATGTAGCAGCAGCAGCGGCAGC
ACGAAGAGGAGGAAGACGACGACAGCGCTGACAGAGAATGGCACGAAGTG
ATGTTGCTGCCCCGGGATATTTTGTTTGAGTCTCCGAGCCAACGCTTGGG
CGTGCCTGAGGCGGTGGAACGTCGCCACCGCATTTTTGACTGTGAACTCA
TCCAGGAGGCCGGCATCCTTTTCTGACCACCCCAAGTTGTCATGGCCACA
GTTCAAACGCTTTTCCATCAATTTCTCTACCGCCGTGTATTCATCTCCGA
AACAGCACAAACCCCCCCCGTCCTCCCTCCTTGGAAAGCCCCCCATGCAT
ACCTTTTTGATGCCTTCACCGCCGCAGTGGGCTGCGTCCTCCTCACCTCC
AAACTCGAGGAGAATCCCCTGGTCCCCCGCGACGTCATGTTCGTCTTCCA
TCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTCCTTGCTGGAAGTCA
CATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCCTGACATTCGGAGAG
TACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAATGTGATGGACCACCA
ACACAACTTTGTCCTCTGTTACAACAAAATCTTGGGGGGGTTCCCGGAGC
TTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTTTGAGGCTTGACTGC
TGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCTGCTCTGTATATGGC
GGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAAGTGCAACTGGCTTC
CGGTCTTCGATGACTCGAAATTCAATTCTTGGAGACTCTCGCGGCCTGAG
ACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTGCGTGGCATTTGTTT
TCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGGAGAAAATATGGAGG
GCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGGCACGTAATATGGGC
CACAGGGCACGTACCTTGTATTGAAAGAATGCCAAAATTAAAGTACTGGC
AATCATCAACTACTAGGATATCATTTGTGCGTGACAGCGACGATGTAGGT
GGACGCCATATTATATCTTGCCTTTCAGGCCGCACA
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Coding sequence (CDS) from alignment at scaffold_1:742361..743946-

>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Nanoce1779_2|8609|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_1:742361..743946- (Nannochloropsis oceanica)
ATGGCCACAGTTCAAACGCTTTTCCATCAATTTCTCTACCGCCGTGTATT
CATCTCCGAAACAGCACAAACCCCCCCCGTCCTCCCTCCTTGGAAAGCCC
CCCATGCATACCTTTTTGATGCCTTCACCGCCGCAGTGGGCTGCGTCCTC
CTCACCTCCAAACTCGAGGAGAATCCCCTGGTCCCCCGCGACGTCATGTT
CGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTCCTTGC
TGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCCTGACA
TTCGGAGAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAATGTGAT
GGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGGGGGGT
TCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTTTGAGG
CTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCTGCTCT
GTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAAGTGCA
ACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGACTCTCG
CGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTGCGTGG
CATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGGAGAAA
ATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGGCACGT
AATATGGGCCACAGGGCACGTACCTTGTATTGA
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Synonyms
Publications