jgi.p|Nanoce1779_2|572342, mRNA_1481 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572342
Unique NamemRNA_1481
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length497
Alignment locationscaffold_1:740747..741243 +

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Properties
Property NameValue
TranscriptId572428
TrackFilteredModels2
ProteinId572342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:740747..741243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572342gene_1481Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572342mRNA_1481-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1481CDS_1481Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Nanoce1779_2|572342|organism=Nannochloropsis oceanica|type=mRNA|length=497bp
ACAGATTTCTCGGATGGATGGCATGTGAAATCCCATTCCCACTCCTCTTT
CCTCCTCCTTCTCTTTCTCCTTCTCCTCCTGCTACTGCTGCTTCCCCTCC
CACCCATCCTCTACCTCTCATCCGCTCTTCCCTCCCTCCCACTCCTGCTC
CTGCTCCCACACTTCCCCTCCAGCTCCTGCTCCTCTCCCTCCCCCTCCCC
ATCCTGCTGCTGCTCGTGCTAGTACTGCTCGCACTCCTCTTCGAACCCCT
CCAGCATTTCTTCTTTCTCCCCCTCCTCTCCTTCCCCTCCTCTCCTTCCT
TCTCCTGCTGCTTCTGCTCGTGCTCGTGCTGGTGCTGCCTTTGCTGCTTC
TGCTGCCGTGGTCCATTTTCTTTCTTCCCCTTCTCCCCCTCCTTCTCCTC
CCCCACCCTACTGCTTCTGCTGCTGCTGCTGCTGCTGCTCTTGCTCCCGC
ATAACCCCTCCCTCAATCCGGTCGCTTGACTTTAACAGAGGGCAATT
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protein sequence of jgi.p|Nanoce1779_2|572342

>mRNA_1481-protein ID=mRNA_1481-protein|Name=jgi.p|Nanoce1779_2|572342|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MACEIPFPLLFPPPSLSPSPPATAASPPTHPLPLIRSSLPPTPAPAPTLP
LQLLLLSLPLPILLLLVLVLLALLFEPLQHFFFLPLLSFPSSPSFSCCFC
SCSCWCCLCCFCCRGPFSFFPFSPSFSSPTLLLLLLLLLLLLLPHNPSLN
PVA*
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mRNA from alignment at scaffold_1:740747..741243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Nanoce1779_2|572342|organism=Nannochloropsis oceanica|type=mRNA|length=497bp|location=Sequence derived from alignment at scaffold_1:740747..741243+ (Nannochloropsis oceanica)
ACAGATTTCTCGGATGGATGGCATGTGAAATCCCATTCCCACTCCTCTTT
CCTCCTCCTTCTCTTTCTCCTTCTCCTCCTGCTACTGCTGCTTCCCCTCC
CACCCATCCTCTACCTCTCATCCGCTCTTCCCTCCCTCCCACTCCTGCTC
CTGCTCCCACACTTCCCCTCCAGCTCCTGCTCCTCTCCCTCCCCCTCCCC
ATCCTGCTGCTGCTCGTGCTAGTACTGCTCGCACTCCTCTTCGAACCCCT
CCAGCATTTCTTCTTTCTCCCCCTCCTCTCCTTCCCCTCCTCTCCTTCCT
TCTCCTGCTGCTTCTGCTCGTGCTCGTGCTGGTGCTGCCTTTGCTGCTTC
TGCTGCCGTGGTCCATTTTCTTTCTTCCCCTTCTCCCCCTCCTTCTCCTC
CCCCACCCTACTGCTTCTGCTGCTGCTGCTGCTGCTGCTCTTGCTCCCGC
ATAACCCCTCCCTCAATCCGGTCGCTTGACTTTAACAGAGGGCAATT
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Coding sequence (CDS) from alignment at scaffold_1:740747..741243+

>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Nanoce1779_2|572342|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_1:740747..741243+ (Nannochloropsis oceanica)
ATGGCATGTGAAATCCCATTCCCACTCCTCTTTCCTCCTCCTTCTCTTTC
TCCTTCTCCTCCTGCTACTGCTGCTTCCCCTCCCACCCATCCTCTACCTC
TCATCCGCTCTTCCCTCCCTCCCACTCCTGCTCCTGCTCCCACACTTCCC
CTCCAGCTCCTGCTCCTCTCCCTCCCCCTCCCCATCCTGCTGCTGCTCGT
GCTAGTACTGCTCGCACTCCTCTTCGAACCCCTCCAGCATTTCTTCTTTC
TCCCCCTCCTCTCCTTCCCCTCCTCTCCTTCCTTCTCCTGCTGCTTCTGC
TCGTGCTCGTGCTGGTGCTGCCTTTGCTGCTTCTGCTGCCGTGGTCCATT
TTCTTTCTTCCCCTTCTCCCCCTCCTTCTCCTCCCCCACCCTACTGCTTC
TGCTGCTGCTGCTGCTGCTGCTCTTGCTCCCGCATAACCCCTCCCTCAAT
CCGGTCGCTTGA
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Synonyms
Publications