|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 576452 |
| Track | FilteredModels2 |
| ProteinId | 576366 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:383614..385712 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_148 ID=mRNA_148|Name=jgi.p|Nanoce1779_2|576366|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
AGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTC
GCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCAC
TCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGC
TTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCC
ACGACCAAGATGGCCACCCCGTCTAGCTTGTACGATTTTACCGTTAAGGA
TGCCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGG
CTGTGTTGGTAGTGAACGTTGCTTCTCAATGCGGTTTCACCCCCCAGTAC
GAAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGT
TTTGGCCTTTCCTTGCAACCAATTTGGGGGGCAAGAGCCGGACGCTGCAC
CGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCATC
ATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTT
CCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTGGAATT
TTTCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGTAGG
TGCTTCTTCCTCTCATGTCCTTCATTTCTTGGTGTAGTTTTGATGGTCAT
GCTTCAATGCTACTGACCCCCTGCAGCCTGTCCTTTCTTGTCGTCTTCCA
TCTCCATCTCCATCCCTCCCTTTTTCCTTAGTCTCCTCCTCCCGCCATCC
TCCTCTTTCCGTGGCTGACCTTATTCTCACTTCTATCCTCCTTCTCATCC
ATGCGGGCGTCTGACAGGCCCCCAGGAGAAGCCTGAGGCCTTCGACAAGG
ACATTGCAGAGGCCTTAACCTAATTTTTGATTTGTGAGACGAGAAGAGAA
GGTAATTATCACTATCCTTGGTTGCTGCGGCGGCTGCTGCTGCTATTTAC
ACCAGTGGTTATGCTTCATTTGAGATCAAGCGTACAAACAAAAACATGCA
CACCGACAATGAGAGAGGGTATCTTGAGTGATGTTAAAAAAAGGTGGAGT
GTTTTTGTCGTTTTTCGGGGTTTGCGCAAGGATAAGTGAGAGTGTGTCTG
CACGGTTCAAGCACAAAATGATCAACGCCATCCCCACCACGGGCCGGCCT
GTTGGATAAAAAGAAAAGAAAAGAGAAGGAAAGGGAATGCGAAAACGAAG
CTCGAGAGAGAAGGAAAAACTCAGTGAAGTCTGGCAATGAGAAGCGAGGG
ATCGGAGCGAGAAATATATTTGGGCACGTA back to topprotein sequence of jgi.p|Nanoce1779_2|576366 >mRNA_148-protein ID=mRNA_148-protein|Name=jgi.p|Nanoce1779_2|576366|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MHLNRRCFIAVATSSLAFTSTPVAASVLVAARTRASASPAFFSNRAVSLL
ATQVSSSSSSSNRQFSTTKMATPSSLYDFTVKDASGQDFNLGEQLKDKKA
VLVVNVASQCGFTPQYEGLQKLQDKYGPKGFTVLAFPCNQFGGQEPDAAP
EVCSYVKNRFKTTFPIMDKVDVNGKNAAPIFNFLKEQQSGFITNSVKWNF
SKWLVKDGKPIKRYGRCFFLSCPSFLGVVLMVMLQCY* back to topmRNA from alignment at scaffold_3:383614..385712- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_148 ID=mRNA_148|Name=jgi.p|Nanoce1779_2|576366|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at scaffold_3:383614..385712- (Nannochloropsis oceanica)
AGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTC
GCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCAC
TCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGC
TTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCC
ACGACCAAGATGGCCACCCCGTAAGTTTCCCGGGGGGCGCAGAGGAGTTG
TGGGGTCTGGAGCCCAAGTTTCACAGGACTTGAATCCTTCACTTACGTTC
CGCTTTAAGCCTGGGTTTTCCATGCGTTCTTATCTTGTCTTTCCACTTTT
TTCTTTTTCGCGCACAGGTCTAGCTTGTACGATTTTACCGTTAAGGATGC
CAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCTG
TGTTGGTAGTGAACGTTGCTTCTCAATGTATGTGGGCACCACGAAGGAAG
GAAGTAAGGGAGAGAGGAAGGGTTTTCCGGTGAATTGCTTTTTAGGGCTT
TTATAGATCCTTGTATGCTGTGCGGACGCGCTCGTAATTTGGTGGCTTTT
CGCGCAAGCTCTCTCATCATCCTGCTGCTTCCAACTCATCTCTCTCCCCC
GCACCGGACAATTGCCACACACGAACAGGCGGTTTCACCCCCCAGTACGA
AGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTTT
TGGCCTTTCCTTGCAACCGTTAGTGACATGTGAAGGGTGGAGGGAGTGAT
GGAGGGGGATAAGAGTAATTGGAGAAGGAACTTGACGCACTTTCTTCTAA
CTTACCTTTTTTTTCATATACACACACGCATGCGCCCTTGCTTCTTCATC
CTCCTCGCTCATCATCACAGAATTTGGGGTCAGTACTTTTATTTATTTGC
TTGTCTACATCTCCCTTTCTTTCTCCTTTCCCCCTAACGATCAACCTCAC
CTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCGCTC
TCTTTAGGGGCAAGAGCCGGACGCTGCACCGGAGGTCTGCAGTTACGTCA
AAAACCGCTTCAAGACCACTTTTCCCATCATGGATAAGGTGGACGTGAAC
GGTAAAAACGCTGCGCCTATTTTTAATTTCCTGAAGGAGCAACAGTCTGG
TTTTATTACCAACTCTGTGAAGTGTACGTAAAGGGGGAGAAATTGGGAGG
GAAGGGCTCGTCTCAGTGTCTTGTCAAATAAGTTCCCTCCCCTTGGATGA
GCTGTAGACCTGCCGCGCCTTTTTTTTCTCCTCACCTGCCAACTTGCCCA
CCGCGACTCACAGGGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGCC
CATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTTG
GTGTAGTTTTGATGGTCATGCTTCAATGCTACTGACCCCCTGCAGCCTGT
CCTTTCTTGTCGTCTTCCATCTCCATCTCCATCCCTCCCTTTTTCCTTAG
TCTCCTCCTCCCGCCATCCTCCTCTTTCCGTGGCTGACCTTATTCTCACT
TCTATCCTCCTTCTCATCCATGCGGGCGTCTGACAGGCCCCCAGGAGAAG
CCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCTAATTTTTGAT
TTGTGAGACGAGAAGAGAAGGTAATTATCACTATCCTTGGTTGCTGCGGC
GGCTGCTGCTGCTATTTACACCAGTGGTTATGCTTCATTTGAGATCAAGC
GTACAAACAAAAACATGCACACCGACAATGAGAGAGGGTATCTTGAGTGA
TGTTAAAAAAAGGTGGAGTGTTTTTGTCGTTTTTCGGGGTTTGCGCAAGG
ATAAGTGAGAGTGTGTCTGCACGGTTCAAGCACAAAATGATCAACGCCAT
CCCCACCACGGGCCGGCCTGTTGGATAAAAAGAAAAGAAAAGAGAAGGAA
AGGGAATGCGAAAACGAAGCTCGAGAGAGAAGGAAAAACTCAGTGAAGTC
TGGCAATGAGAAGCGAGGGATCGGAGCGAGAAATATATTTGGGCACGTA back to topCoding sequence (CDS) from alignment at scaffold_3:383614..385712- >mRNA_148 ID=mRNA_148|Name=jgi.p|Nanoce1779_2|576366|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_3:383614..385712- (Nannochloropsis oceanica)
GGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTAT
GGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTTGGTGTAGTTTTGAT
GGTCATGCTTCAATGCTACTGAGGGCAAGAGCCGGACGCTGCACCGGAGG
TCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCATCATGGAT
AAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTTCCTGAA
GGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTAATTTGGGGCGG
TTTCACCCCCCAGTACGAAGGTCTCCAGAAGCTTCAGGACAAATACGGGC
CCAAAGGCTTCACTGTTTTGGCCTTTCCTTGCAACCGTCTAGCTTGTACG
ATTTTACCGTTAAGGATGCCAGCGGCCAGGACTTCAACCTGGGCGAGCAG
CTCAAAGACAAAAAGGCTGTGTTGGTAGTGAACGTTGCTTCTCAATATGC
ACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTCGCGTTT
ACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCACTCGCGC
CAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGCTTGCGA
CTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCCACGACC
AAGATGGCCACCCCGGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGC
CCATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTT
GGTGTAGTTTTGATGGTCATGCTTCAATGCTACTGAGGGCAAGAGCCGGA
CGCTGCACCGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTT
TTCCCATCATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATT
TTTAATTTCCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAA
GTAATTTGGGGCGGTTTCACCCCCCAGTACGAAGGTCTCCAGAAGCTTCA
GGACAAATACGGGCCCAAAGGCTTCACTGTTTTGGCCTTTCCTTGCAACC
GTCTAGCTTGTACGATTTTACCGTTAAGGATGCCAGCGGCCAGGACTTCA
ACCTGGGCGAGCAGCTCAAAGACAAAAAGGCTGTGTTGGTAGTGAACGTT
GCTTCTCAATATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTT
CGTCTCTCGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCT
GCCCGCACTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGT
CTCGTTGCTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGAC
AGTTCTCCACGACCAAGATGGCCACCCCGGAATTTTTCCAAATGGCTGGT
CAAGGACGGCAAGCCCATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCAT
GTCCTTCATTTCTTGGTGTAGTTTTGATGGTCATGCTTCAATGCTACTGA
GGGCAAGAGCCGGACGCTGCACCGGAGGTCTGCAGTTACGTCAAAAACCG
CTTCAAGACCACTTTTCCCATCATGGATAAGGTGGACGTGAACGGTAAAA
ACGCTGCGCCTATTTTTAATTTCCTGAAGGAGCAACAGTCTGGTTTTATT
ACCAACTCTGTGAAGTAATTTGGGGCGGTTTCACCCCCCAGTACGAAGGT
CTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTTTTGGC
CTTTCCTTGCAACCGTCTAGCTTGTACGATTTTACCGTTAAGGATGCCAG
CGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCTGTGT
TGGTAGTGAACGTTGCTTCTCAATATGCACTTAAATCGTCGCTGCTTTAT
TGCCGTGGCCACTTCGTCTCTCGCGTTTACCAGCACCCCCGTTGCCGCCT
CGGTCTTAGTCGCTGCCCGCACTCGCGCCAGCGCCAGCCCAGCATTCTTT
AGCAACCGCGCCGTCTCGTTGCTTGCGACTCAGGTCTCGTCGTCGTCATC
TTCGTCAAACCGACAGTTCTCCACGACCAAGATGGCCACCCCGGAATTTT
TCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGTAGGTG
CTTCTTCCTCTCATGTCCTTCATTTCTTGGTGTAGTTTTGATGGTCATGC
TTCAATGCTACTGAGGGCAAGAGCCGGACGCTGCACCGGAGGTCTGCAGT
TACGTCAAAAACCGCTTCAAGACCACTTTTCCCATCATGGATAAGGTGGA
CGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTTCCTGAAGGAGCAAC
AGTCTGGTTTTATTACCAACTCTGTGAAGTAATTTGGGGCGGTTTCACCC
CCCAGTACGAAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGC
TTCACTGTTTTGGCCTTTCCTTGCAACCGTCTAGCTTGTACGATTTTACC
GTTAAGGATGCCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGA
CAAAAAGGCTGTGTTGGTAGTGAACGTTGCTTCTCAATATGCACTTAAAT
CGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTCGCGTTTACCAGCAC
CCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCACTCGCGCCAGCGCCA
GCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGCTTGCGACTCAGGTC
TCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCCACGACCAAGATGGC
CACCCCGGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAG
CGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTTGGTGTAGT
TTTGATGGTCATGCTTCAATGCTACTGAGGGCAAGAGCCGGACGCTGCAC
CGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCATC
ATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTT
CCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTAATTTG
GGGCGGTTTCACCCCCCAGTACGAAGGTCTCCAGAAGCTTCAGGACAAAT
ACGGGCCCAAAGGCTTCACTGTTTTGGCCTTTCCTTGCAACCGTCTAGCT
TGTACGATTTTACCGTTAAGGATGCCAGCGGCCAGGACTTCAACCTGGGC
GAGCAGCTCAAAGACAAAAAGGCTGTGTTGGTAGTGAACGTTGCTTCTCA
ATATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTC
GCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCAC
TCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGC
TTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCC
ACGACCAAGATGGCCACCCCGGAATTTTTCCAAATGGCTGGTCAAGGACG
GCAAGCCCATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCA
TTTCTTGGTGTAGTTTTGATGGTCATGCTTCAATGCTACTGAGGGCAAGA
GCCGGACGCTGCACCGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGA
CCACTTTTCCCATCATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCG
CCTATTTTTAATTTCCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTC
TGTGAAGTAATTTGGGGCGGTTTCACCCCCCAGTACGAAGGTCTCCAGAA
GCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTTTTGGCCTTTCCTT
GCAACCGTCTAGCTTGTACGATTTTACCGTTAAGGATGCCAGCGGCCAGG
ACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCTGTGTTGGTAGTG
AACGTTGCTTCTCAATATGCACTTAAATCGTCGCTGCTTTATTGCCGTGG
CCACTTCGTCTCTCGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTA
GTCGCTGCCCGCACTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCG
CGCCGTCTCGTTGCTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAA
ACCGACAGTTCTCCACGACCAAGATGGCCACCCC back to top
|