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Properties
| Property Name | Value |
|---|
| TranscriptId | 572385 |
| Track | FilteredModels2 |
| ProteinId | 572299 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:724723..727894 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1477 ID=mRNA_1477|Name=jgi.p|Nanoce1779_2|572299|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp
ACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCCTTCTTTT
TCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGGGTTTGCTT
ATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCCAAGGAGTG
CAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCACAATATTGA
ACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGCCGACGATT
GGCTTCAATGTGGAGACACTGCAATACAAGAACATCAAGTTCCAGGTGTG
GGACCTGGGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCC
CCAACACTGACGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGG
CTTGCCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACT
TCGTGACTCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCG
CCCTCAACGCAAGCCAGATTTCCGAGGCCCTGGGCCTACCCAACCTCAGA
AACAGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTT
GTTCGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGT
GAGGGTTGGGAGCAATCTCTTGTGGGAGTTTGTGTACGGAGTCAGGCATG
TTAACGCAAGATGAAAGGATGTCAGACGGAGAAATCGGGGCGGCAGGCGC
AACTCATGTATGTAACATTAGAAACTGCATCTTTTCCTGTTCCGGTATCG
CACACTGCAAGACCAAATAAAAATCGATTTGTGTCACGTGCTTCCTCACA
GATCGCTGGTACTTTTTAGTGGGGGGGGGAGGGGGGCGTCATCGAATCCA
TCTCCCAAATCTACTTTTTGCGACTCAAAGTGCGTTGCTTCTCGGCATGT
ACAACTATCTTGTCCCCGATCTGCAAGCCCTTGCGGCGGCGAGTATCATC
AATATACTTGCGTGCCACGTTACTTTCGCTGGTCATCGTCTCCCCAAACT
CCTCCCGGTCCTCTTCATTCTGCGGACGCCAAAATGGGTTCATCTCCATA
CGTTCCCAATGAGAAAAGGCCAGCTGGGGCGAAGTCGCTGCACCAGACGT
CTTCTTAAGAAGTTCCGTGGCGAATCCAAAGCTCTCTGCAACAGGTAGAA
GGGCCTTGATGATGAAAAGATCGGTACCTTCGATAATGTCTTCTTCAACA
ACCCGCCCTCGCCGCCGCGATAGCACGCCGTACAATTTACCCAGTTGCAT
CCGGTCGCATTGGAGATCACACTCAAAAAGCGCTTCCACCAGGCGAACTG
GCGAAGAGAGAAAAGCAGCCCGACAGGCGCTCTTGCATGAGGACATCACC
TGTCCGGTGATGCTACCCAGCCGTGCAGTCAGCCATATGTTGAGATCCTC
ACAAGTCAAAGGTGGAATTGCAAATTTGCCTCCTTGATCTTGTCCTTGTT
CTCGCTCTTGTCCTTCTTGTTTTCGTTCCCCTTTTGGTGCTTTGTCTTTT
CCTACTTCTTCTGCTGCACAAAACTCCTCGCGCTTCAGGAGCAACGCTAC
TTCCTCCACCACGAAAGCCACGCCGTACATCTGTTCTTCGGCTAATGGAC
CACTGGCGGTCGCCATCTGGAAGCCAACAAGAATGCTGTTCTCCAAGGTT
GGCCACGCAAAGGATTTCTTCCACTCATTAAGTTTCCCCGCATCCACAAG
GCCAACATCACTTTCGGTTTCCTCCGAACCACCGCCTGCTGCCCATAAGA
CACTGAAAACAAAATCCGGCGCCTTCCAAAGCATGTTGGGTCCCACATTT
CGGGGGCCAAAAGCCAGGATGGCATCCATCTCAGCACTAAGCCCAGTCCA
TCTCTCGTTTACTTCAATTGGTTCGTGAGTTTCATCATTTCTCTTTCCTT
CCCGCTCCTGTCTGAGGCAGTCCTCGAGCTTCTGCCGGAAAATCCGTCTG
TCGTCCACAAAGTCACCGCATTCCTTGTTGACCACAGACATCCGTCGCAT
CGCCGCTGGG back to topprotein sequence of jgi.p|Nanoce1779_2|572299 >mRNA_1477-protein ID=mRNA_1477-protein|Name=jgi.p|Nanoce1779_2|572299|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MGLLISKIMQSLSTMFGSKECRILILGLDNAGKTTILNRLQNDSDEVMQT
VPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYFPNTDAIIFVVDSA
DVERLAIAKQELCAMLEEEELRDSILLVFANKQDQKGALNASQISEALGL
PNLRNRQWSIQETSATKGKGLFEGFDWLSTAIMGGGK* back to topmRNA from alignment at scaffold_1:724723..727894- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1477 ID=mRNA_1477|Name=jgi.p|Nanoce1779_2|572299|organism=Nannochloropsis oceanica|type=mRNA|length=3172bp|location=Sequence derived from alignment at scaffold_1:724723..727894- (Nannochloropsis oceanica)
ACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCCTTCTTTT
TCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGTAAGTATGA
TGAGAAAAGTTCGAGACATGAATGAATGAAGTGCCAGGCTTCATGGCGCT
GGTGCGATTTCTTCGACCTGATGTCGTTCAGGCCCCGCGTCATCGTCGTC
TACATGTCAAAATAGTCAGGACATGAGCTTTTTCTCGCAAGTCCGTGGCC
AACTAGCGGATCATTTTCATTTGGCTTTGGACTTGGCTCTGGATGTGTGG
ACTTGCATATTTCCAAGATCTCAAGATAAAGATAAAGCAGCCTGGCGCTT
CGGCGGGGGAGGGGGGGTCGTAGGGGTGGATGGGAGTTTCCCGACGACGC
ATCAACTAATGTCGATGGGCACTAAACACACCAAATCATAGGGGTTTGCT
TATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCCAAGGAGT
GCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCACAATATTG
AACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGCCGACGAT
TGGGTGAGCGATTGGCCATTATAGACCTCCTTATGTCCCGTAGCTACTCT
TTCTTTACCCTTGTACTCCCATCTGTTGTTTGACACCACGAAGAGCTATC
TGATTTCTCGTCTTTTTTTCTTCCTCCATCTAGCTTCAATGTGGAGACAC
TGCAATACAAGAACATCAAGTTCCAGGTACGTCGTGTCTATGCGCGTAAG
GAGCAATGATCAGGGTGCCGGGCTTCTGATCTCGTGTATGCGCTCTCCAC
TTGCCCGAGCTCGCTATTCTGCCCACTTCCTCTCTTGTTACGACTGCCCC
TTGACATAGTATCATGCACGCACAATCGCAGGTGTGGGACCTGGGTGGCC
AGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACACTGACGCC
ATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCATCGCAAA
GCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGACTCCATCC
TACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAACGCAAGC
CAGGTAACGTGGCAGCATATGCATCCCTTTACTTACCGATTTAAACCCGC
TCCTTCCCACCCTCTTCCATCCCTCTCTTCTTATTACTACAAATTAACGC
TTTCCTTTTCATCAACGCCGATCTTATCATGTTCCGGTCTTGCAGATTTC
CGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAATGGTCGATTCAAG
AGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGCTTTGATTGGCTG
TCGACGGCAATTATGGGGGGTGGGAAGTGAGGGTTGGGAGCAATCTCTTG
TGGGAGTTTGTGTACGGAGTCAGGCATGTTAACGCAAGATGAAAGGATGT
CAGACGGAGAAATCGGGGCGGCAGGCGCAACTCATGTATGTAACATTAGA
AACTGCATCTTTTCCTGTTCCGGTATCGCACACTGCAAGACCAAATAAAA
ATCGATTTGTGTCACGTGCTTCCTCACAGATCGCTGGTACTTTTTAGTGG
GGGGGGGAGGGGGGCGTCATCGAATCCATCTCCCAAATCTACTTTTTGCG
ACTCAAAGTGCGTTGCTTCTCGGCATGTACAACTATCTTGTCCCCGATCT
GCAAGCCCTTGCGGCGGCGAGTATCATCAATATACTTGCGTGCCACGTTA
CTTTCGCTGGTCATCGTCTCCCCAAACTCCTCCCGGTCCTCTTCATTCTG
CGGACGCCAAAATGGGTTCATCTCCATACGTTCCCAATGAGAAAAGGCCA
GCTGGGGCGAAGTCGCTGCACCAGACGTCTTCTTAAGAAGTTCCGTGGCG
AATCCAAAGCTCTCTGCAACAGGTAGAAGGGCCTTGATGATGAAAAGATC
GGTACCTTCGATAATGTCTTCTTCAACAACCCGCCCTCGCCGCCGCGATA
GCACGCCGTACAATTTACCCAGTTGCATCTGTTTGTTCGCAATTTTATTG
CGCGCGCGTGTAATGGTCACCATGAAAAGTAGTAGAGAGTTTGATTCGCG
TGCAGACATGTAGAGTCAAAGGTTTCCTGAATGTTTTACTTACCCGGTCG
CATTGGAGATCACACTCAAAAAGCGCTTCCACCAGGCGAACTGGCGAAGA
GAGAAAAGCAGCCCGACAGGCGCTCTGCAATTTCGGGCGTGGAAATAAGC
GGTGAGGATGTGCGTCTGCTCATAAGGGCAACAATCTTGTGCCTAACTTG
TGACAAGAGAGCTCGACGAATGCATCTGTAGAGAATATTGCATTCTGACC
AACCCACTGACCTTGCATGAGGACATCACCTGTCCGGTGATGCTACCCAG
CCGTGCAGTCAGCCATATGTTGAGATCCTCACAAGTCAAAGGTGGAATTG
CAAATTTGCCTCCTTGATCTTGTCCTTGTTCTCGCTCTTGTCCTTCTTGT
TTTCGTTCCCCTTTTGGTGCTTTGTCTTTTCCTACTTCTTCTGCTGCACA
AAACTCCTCGCGCTTCAGGAGCAACGCTACTTCCTCCACCACGAAAGCCA
CGCCGTACATCTGTTCTTCGGCTAATGGACCTGATTATAGAGACATCGGG
TGGAGGATGTGATATACATGTAACGCGTGCCCGAGCCCTATACCTCGCGA
TTTATCACTCACCACTGGCGGTCGCCATCTGGAAGCCAACAAGAATGCTG
TTCTCCAAGGTTGGCCACGCAAAGGATTTCTTCCACTCATTAAGTTTCCC
CGCATCCACAAGGCCAACATCACTTTCGGTTTCCTCCGAACCACCGCCTG
CTGCCCATAAGACACTGAAAACAAAATCCGGCGCCTTCCAAAGCATGTTG
GGTCCCACATTTCGGGGGCCAAAAGCCAGGATGGCATCCATCTCAGCACT
AAGCCCAGTCCATCTCTCGTTTACTTCAATTGGTTCGTGAGTTTCATCAT
TTCTCTTTCCTTCCCGCTCCTGTCTGAGGCAGTCCTCGAGCTTCTGCCGG
AAAATCCGTCTGTCGTCCACAAAGTCACCGCATTCCTTGTTGACCACAGA
CATCCGTCGCATCGCCGCTGGG back to topCoding sequence (CDS) from alignment at scaffold_1:724723..727894- >mRNA_1477 ID=mRNA_1477|Name=jgi.p|Nanoce1779_2|572299|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_1:724723..727894- (Nannochloropsis oceanica)
ATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAATGGTCGAT
TCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGCTTTGATT
GGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGAGTGTGGGACCTGGGT
GGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACACTGA
CGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCATCG
CAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGACTCC
ATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAACGC
AAGCCAGCTTCAATGTGGAGACACTGCAATACAAGAACATCAAGTTCCAG
GGGTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCT
CCAAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACC
ACAATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGT
GCCGACGATTGGATATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAAC
AGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTT
CGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGAG
TGTGGGACCTGGGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTAT
TTCCCCAACACTGACGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGA
GAGGCTTGCCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAG
AACTTCGTGACTCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAA
GGCGCCCTCAACGCAAGCCAGCTTCAATGTGGAGACACTGCAATACAAGA
ACATCAAGTTCCAGGGGTTTGCTTATTTCTAAGATCATGCAGTCTCTTTC
TACCATGTTCGGCTCCAAGGAGTGCAGAATTTTGATCCTTGGACTAGACA
ATGCCGGGAAGACCACAATATTGAACAGGCTGCAAAATGACTCGGACGAG
GTGATGCAGACTGTGCCGACGATTGGATATTTCCGAGGCCCTGGGCCTAC
CCAACCTCAGAAACAGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAA
GGAAAGGGGTTGTTCGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGG
GGGTGGGAAGTGAGTGTGGGACCTGGGTGGCCAGACCAGCATCCGCCCTT
ACTGGCGGTGCTATTTCCCCAACACTGACGCCATCATCTTCGTGGTGGAC
AGTGCGGATGTGGAGAGGCTTGCCATCGCAAAGCAGGAGCTGTGTGCCAT
GCTGGAAGAAGAAGAACTTCGTGACTCCATCCTACTCGTCTTTGCCAACA
AGCAGGACCAGAAAGGCGCCCTCAACGCAAGCCAGCTTCAATGTGGAGAC
ACTGCAATACAAGAACATCAAGTTCCAGGGGTTTGCTTATTTCTAAGATC
ATGCAGTCTCTTTCTACCATGTTCGGCTCCAAGGAGTGCAGAATTTTGAT
CCTTGGACTAGACAATGCCGGGAAGACCACAATATTGAACAGGCTGCAAA
ATGACTCGGACGAGGTGATGCAGACTGTGCCGACGATTGGATATTTCCGA
GGCCCTGGGCCTACCCAACCTCAGAAACAGGCAATGGTCGATTCAAGAGA
CCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGCTTTGATTGGCTGTCG
ACGGCAATTATGGGGGGTGGGAAGTGAGTGTGGGACCTGGGTGGCCAGAC
CAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACACTGACGCCATCA
TCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCATCGCAAAGCAG
GAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGACTCCATCCTACT
CGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAACGCAAGCCAGC
TTCAATGTGGAGACACTGCAATACAAGAACATCAAGTTCCAGGGGTTTGC
TTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCCAAGGAG
TGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCACAATATT
GAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGCCGACGA
TTGGATATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAATG
GTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGCT
TTGATTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGAGTGTGGGAC
CTGGGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAA
CACTGACGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTG
CCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGT
GACTCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCT
CAACGCAAGCCAGCTTCAATGTGGAGACACTGCAATACAAGAACATCAAG
TTCCAGGGGTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGT
TCGGCTCCAAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGG
AAGACCACAATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCA
GACTGTGCCGACGATTGGAT back to top
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