jgi.p|Nanoce1779_2|572262, mRNA_1473 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572262
Unique Name	mRNA_1473
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2605
Alignment location	scaffold_1:709737..712667 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572348
Track	FilteredModels2
ProteinId	572262

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:709737..712667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572262	gene_1473	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572262	mRNA_1473-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1473	CDS_1473	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:709737..712667+
coding sequence from alignment at scaffold_1:709737..712667+

mRNA sequence

>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Nanoce1779_2|572262|organism=Nannochloropsis oceanica|type=mRNA|length=2605bp
AAAGGTGTTTCCTTCATGTCGTTTTGGCTTTAATCTACCTTCTTAGTAGT
GTCCGTGTGGTGCGGGCGTCCTGCGCGGCGGTTGCTGGGGGTGAAAAGGG
GCGCAGGGTGTGTGAGCACTGATATACGCTTCCAACTGTTCACTGATATA
CATTTCCAACTGTTCTGTTCGTCGCGAGCGATGTCGCTCAAGAATAGCCA
GACTCTACAAGCGCATAAAGCTATTACTTGCACTATAGCATGGTCAGATG
TCCACCTCACTCACATTGAGACATGATGCATGACAGGCCTCTTGGTCGCT
CTTCAACGGCTCGTGTGAAGCCTACAACGTATGCCCTCGGAGGCATCGAG
CCATATGACTGCTATCTGCGAGCTAGAATGTTTGGTGTATCAAGAGCTGC
CTTGGGCGAGAGCCAAGTCAGTACGAACCAGCCTCTTGCGCACCCTCGTA
TGGTTTACTACGGGGCGCCGTACACACTAGTAGTTGTGGCGGCGGCGATC
ATGCCAAACTTCCAATTCCATCGATGTTGTCAGATGTCATTATTCCTCCC
TCTCCACATTAATTATCCTCTCTCCAACTTCCCAACAGTACAAGTCCACG
GAGAGAAACGAGCAAATCGGTCATGGGGAACAAACCGTCTCTCGAAGACC
ACCTGGTCAACCTGCGGCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAG
AAATGTGAGTCAAGCGAAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCAT
CGAGGCCCGTAACACGGAAGGGGCCCGCGTCTATGCACAGAACGCTATTC
GGGAGAAGACGCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGAT
GCGGTGGCGGCGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGG
TGCCATGGCAGGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGG
ACGTTGAGAAGTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAA
GACACGGACGTTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCAC
CGCCAGTTCCACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGG
CCGACGCCCACAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATG
GTTGGCAACAAGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGA
GCAACGCTTTGCTGCTCTTCGGAAGTAGGCACTGAAGGGTGCACGCATCG
TAGGGGTGTAGAGAAATGGTTGTTTTAGGTTGGGAGTAATAGGCCTCGAT
GTCTAGAGGAAATAAACAATATACGTAGACGATATACGATATACGCCTTT
TCAAAAAATGCACGAACAAAATTACATCACGGCGGGACTTATGATGGGGC
ACGTTTTGTGTGAGCCTCCCGGGATGGTTTTTCTTGCTTCGTTTTTGGTA
AATGATGTTTAATGCGTCATGCTTGGTTTCGATGGTGGTGGGAAGGGATC
CCAGAAAAAAAGAGAAAGCTAGAGAGAAGAGCCATCGGCGACGCAAGACG
TTTGATTGTGCTTGCAGGCGGAGTTTTCCCACGACAACCAACAATGGATG
CATTGATTCTGGCTGTTGCATTATAGTATTAAATCCTGTACGAGTACTAT
ATGTGGAGGAAAAGATCGCATGAAACTATCAAATTACTGCAAAAGTAAGT
CCGTGGTTGACATAAAATCGTATCGATCGATCAACTTGCTACCGATCAAC
CTCCAAAAACAGGTTGGGAAACCTTTTCAAAGCCCATTTCAAGTCAGCGA
AAAAATATGACGAAATGAATGGAAAGAAAGGATGTGTCCCTATAGCAAGA
ATGCTCCTATAAAGATGAGAAAAGCCCTCATCCTCCATCCCATTTGACTG
CTCTTGTTCGCCTTTTTCTCTCCTTTTCTTTCCCAACTCCGATCAAAGAT
CACGCCACCAGTCAGATCGCACAAAATCCACCTACTCAGAGTTATGTCGT
GGCTATGCAGAAATTCGTTATTTTTATTGTGTGGGTGCTGAGAAAACAGA
ACAGAGCTCGTTGACTGCCTAAGCTCCAACGATCCGGACGTCTCGGGATG
CTCTTCCGTAGAATTCAACATGTGACCGCCCGCAAAAACAAGAGAGGCCG
CACGAATACACGAAGACTTCGAAGGAGAAACAAAACACATTCAGTAGAAG
CGAATCATAATCTTTAGGGAAATAGAGCGACTGCGAATACAAGTCCATCC
ATATGTTTTCCCATGCTGAGCGTCTCGGCAATATTTGGAAATAGTGGTCG
GCAATACCGCAAAATCCACCCAAAACAAAACGCCGCCACGCTCAAACTCT
CTTTTAATTCCCTTTCGCCACCACATCAGACATTTCCCAGCCACCAAAAC
CCTTGACGTTGGCGCCGTGAGGTCGTTGTTTGCACTTCGCCGCCGCCGCC
GCCTGCATTGCCACGATTGCGCGCAGCGGTCTTTCTTTCTCCAAGGCCCG
GTCAAACTTCCCAATACATTACGCACGACTGCTAGCTGCCGACCACCACC
CCCGTCTACACGGCCCGAAATCACCGCGCGAGCTTCATGGCCGACGCGGA
ACATG

protein sequence of jgi.p|Nanoce1779_2|572262

>mRNA_1473-protein ID=mRNA_1473-protein|Name=jgi.p|Nanoce1779_2|572262|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKEAKSKLKKAIEARNTEG
ARVYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVT
GMDTALKDMDVEKLAKIMDQFEKQFEDTDVRTGYLEGAIASTTASSTPQE
MVDNLIQETADAHNLELGTMLDDAGMVGNKLPAVEAPAANDLEQRFAALR
K*

mRNA from alignment at scaffold_1:709737..712667+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Nanoce1779_2|572262|organism=Nannochloropsis oceanica|type=mRNA|length=2931bp|location=Sequence derived from alignment at scaffold_1:709737..712667+ (Nannochloropsis oceanica)
AAAGGTGTTTCCTTCATGTCGTTTTGGCTTTAATCTACCTTCTTAGTAGT
GTCCGTGTGGTGCGGGCGTCCTGCGCGGCGGTTGCTGGGGGTGAAAAGGG
GCGCAGGGTGTGTGAGCACTGATATACGCTTCCAACTGTTCACTGATATA
CATTTCCAACTGTTCTGTTCGTCGCGAGCGATGTCGCTCAAGAATAGCCA
GACTCTACAAGCGCATAAAGCTATTACTTGCACTATAGCATGGTCAGATG
TCCACCTCACTCACATTGAGACATGATGCATGACAGGCCTCTTGGTCGCT
CTTCAACGGCTCGTGTGAAGCCTACAACGTATGCCCTCGGAGGCATCGAG
CCATATGACTGCTATCTGCGAGCTAGAATGTTTGGTGTATCAAGAGCTGC
CTTGGGCGAGAGCCAAGTCAGTACGAACCAGCCTCTTGCGCACCCTCGTA
TGGTTTACTACGGGGCGCCGTACACACTAGTAGTTGTGGCGGCGGCGATC
ATGCCAAACTTCCAATTCCATCGATGTTGTCAGATGTCATTATTCCTCCC
TCTCCACATTAATTATCCTCTCTCCAACTTCCCAACAGTACAAGTCCACG
GAGAGAAACGAGCAAATCGGTCATGGGGAACAAACCGTCTCTCGAAGGTG
AGTCTACCCTCGAGATATGTGCAGCCTGGGATTTCTCTCTATGACATGAC
CAATTATGACTCTCCTCCTACTTTTTCCACCTTTCCCTCCACTTCCTGCC
TGTGTATTCAGACCACCTGGTCAACCTGCGGCTGACAAGCAAGCAAATGG
TGCGGGGTTCGAAGAAATGTGAGTCAAGCGAAAAGGAGGCTAAAAGTAAG
CTGAAGAAGGCCATCGAGGCCCGTAACACGGAAGGGGCCCGCGTCTATGC
ACAGGTACTACTCCTCGTTCTCCACCTCTACCATTCTCGCGACGATCTTC
ACTTTGACGCACTTTAAAAAAAATTGCCCATCACAGAACGCTATTCGGGA
GAAGACGCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGCGG
TGGCGGCGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTGCC
ATGGCAGGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGGACGT
TGAGAAGGTAGGTACCGCGTGTGGATTAAAATAGCTAGTCCGGCGCATGA
AAATTTTAGACATCTTTGCCGGGGCATACACTCATGATGATGTCCTCATC
TCTTTCTTGCCCCACCCACACATCCCTGTCCTTTCAGTTGGCCAAGATCA
TGGACCAGTTTGAGAAGCAATTCGAAGACACGGACGTTCGCACGGGATAT
TTGGAGGGTGCCATCGCCAGTACCACCGCCAGTTCCACGCCCCAGGAGAT
GGTCGACAATCTGATTCAGGAGACGGCCGACGCCCACAACCTCGAGCTGG
GCACCATGCTGGACGACGCAGGCATGGTTGGCAACAAGCTGCCAGCTGTG
GAAGCGCCTGCCGCGAATGACTTGGAGCAACGCTTTGCTGCTCTTCGGAA
GTAGGCACTGAAGGGTGCACGCATCGTAGGGGTGTAGAGAAATGGTTGTT
TTAGGTTGGGAGTAATAGGCCTCGATGTCTAGAGGAAATAAACAATATAC
GTAGACGATATACGATATACGCCTTTTCAAAAAATGCACGAACAAAATTA
CATCACGGCGGGACTTATGATGGGGCACGTTTTGTGTGAGCCTCCCGGGA
TGGTTTTTCTTGCTTCGTTTTTGGTAAATGATGTTTAATGCGTCATGCTT
GGTTTCGATGGTGGTGGGAAGGGATCCCAGAAAAAAAGAGAAAGCTAGAG
AGAAGAGCCATCGGCGACGCAAGACGTTTGATTGTGCTTGCAGGCGGAGT
TTTCCCACGACAACCAACAATGGATGCATTGATTCTGGCTGTTGCATTAT
AGTATTAAATCCTGTACGAGTACTATATGTGGAGGAAAAGATCGCATGAA
ACTATCAAATTACTGCAAAAGTAAGTCCGTGGTTGACATAAAATCGTATC
GATCGATCAACTTGCTACCGATCAACCTCCAAAAACAGGTTGGGAAACCT
TTTCAAAGCCCATTTCAAGTCAGCGAAAAAATATGACGAAATGAATGGAA
AGAAAGGATGTGTCCCTATAGCAAGAATGCTCCTATAAAGATGAGAAAAG
CCCTCATCCTCCATCCCATTTGACTGCTCTTGTTCGCCTTTTTCTCTCCT
TTTCTTTCCCAACTCCGATCAAAGATCACGCCACCAGTCAGATCGCACAA
AATCCACCTACTCAGAGTTATGTCGTGGCTATGCAGAAATTCGTTATTTT
TATTGTGTGGGTGCTGAGAAAACAGAACAGAGCTCGTTGACTGCCTAAGC
TCCAACGATCCGGACGTCTCGGGATGCTCTTCCGTAGAATTCAACATGTG
ACCGCCCGCAAAAACAAGAGAGGCCGCACGAATACACGAAGACTTCGAAG
GAGAAACAAAACACATTCAGTAGAAGCGAATCATAATCTTTAGGGAAATA
GAGCGACTGCGAATACAAGTCCATCCATATGTTTTCCCATGCTGAGCGTC
TCGGCAATATTTGGAAATAGTGGTCGGCAATACCGCAAAATCCACCCAAA
ACAAAACGCCGCCACGCTCAAACTCTCTTTTAATTCCCTTTCGCCACCAC
ATCAGACATTTCCCAGCCACCAAAACCCTTGACGTTGGCGCCGTGAGGTC
GTTGTTTGCACTTCGCCGCCGCCGCCGCCTGCATTGCCACGATTGCGCGC
AGCGGTCTTTCTTTCTCCAAGGCCCGGTCAAACTTCCCAATACATTACGC
ACGACTGCTAGCTGCCGACCACCACCCCCGTCTACACGGCCCGAAATCAC
CGCGCGAGCTTCATGGCCGACGCGGAACATG

Coding sequence (CDS) from alignment at scaffold_1:709737..712667+

>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Nanoce1779_2|572262|organism=Nannochloropsis oceanica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_1:709737..712667+ (Nannochloropsis oceanica)
ATGGGGAACAAACCGTCTCTCGAAGACCACCTGGTCAACCTGCGGCTGAC
AAGCAAGCAAATGGTGCGGGGTTCGAAGAAATGTGAGTCAAGCGAAAAGG
AGGCTAAAAGTAAGCTGAAGAAGGCCATCGAGGCCCGTAACACGGAAGGG
GCCCGCGTCTATGCACAGAACGCTATTCGGGAGAAGACGCAGGCCTTAAA
TTACTTGAGGCTGTCCTCCAGAATAGATGCGGTGGCGGCGCGCTTGGAAA
GCGCAATACGAATGAAGCAGGTAACGGGTGCCATGGCAGGCATTGTCACG
GGCATGGATACGGCGCTCAAAGATATGGACGTTGAGAAGTTGGCCAAGAT
CATGGACCAGTTTGAGAAGCAATTCGAAGACACGGACGTTCGCACGGGAT
ATTTGGAGGGTGCCATCGCCAGTACCACCGCCAGTTCCACGCCCCAGGAG
ATGGTCGACAATCTGATTCAGGAGACGGCCGACGCCCACAACCTCGAGCT
GGGCACCATGCTGGACGACGCAGGCATGGTTGGCAACAAGCTGCCAGCTG
TGGAAGCGCCTGCCGCGAATGACTTGGAGCAACGCTTTGCTGCTCTTCGG
AAGTAGATGGGGAACAAACCGTCTCTCGAAGACCACCTGGTCAACCTGCG
GCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAAATGTGAGTCAAGCG
AAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCGAGGCCCGTAACACG
GAAGGGGCCCGCGTCTATGCACAGAACGCTATTCGGGAGAAGACGCAGGC
CTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGCGGTGGCGGCGCGCT
TGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTGCCATGGCAGGCATT
GTCACGGGCATGGATACGGCGCTCAAAGATATGGACGTTGAGAAGTTGGC
CAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGACACGGACGTTCGCA
CGGGATATTTGGAGGGTGCCATCGCCAGTACCACCGCCAGTTCCACGCCC
CAGGAGATGGTCGACAATCTGATTCAGGAGACGGCCGACGCCCACAACCT
CGAGCTGGGCACCATGCTGGACGACGCAGGCATGGTTGGCAACAAGCTGC
CAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGCAACGCTTTGCTGCT
CTTCGGAAGTAGATGGGGAACAAACCGTCTCTCGAAGACCACCTGGTCAA
CCTGCGGCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAAATGTGAGT
CAAGCGAAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCGAGGCCCGT
AACACGGAAGGGGCCCGCGTCTATGCACAGAACGCTATTCGGGAGAAGAC
GCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGCGGTGGCGG
CGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTGCCATGGCA
GGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGGACGTTGAGAA
GTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGACACGGACG
TTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCACCGCCAGTTCC
ACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGGCCGACGCCCA
CAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATGGTTGGCAACA
AGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGCAACGCTTT
GCTGCTCTTCGGAAGTAGATGGGGAACAAACCGTCTCTCGAAGACCACCT
GGTCAACCTGCGGCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAAAT
GTGAGTCAAGCGAAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCGAG
GCCCGTAACACGGAAGGGGCCCGCGTCTATGCACAGAACGCTATTCGGGA
GAAGACGCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGCGG
TGGCGGCGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTGCC
ATGGCAGGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGGACGT
TGAGAAGTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGACA
CGGACGTTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCACCGCC
AGTTCCACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGGCCGA
CGCCCACAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATGGTTG
GCAACAAGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGCAA
CGCTTTGCTGCTCTTCGGAAGTAG

Synonyms

Publications