jgi.p|Nanoce1779_2|572255, mRNA_1472 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572255
Unique NamemRNA_1472
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length641
Alignment locationscaffold_1:708520..709736 +

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Properties
Property NameValue
TranscriptId572341
TrackFilteredModels2
ProteinId572255
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:708520..709736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572255gene_1472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572255mRNA_1472-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1472CDS_1472Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1472 ID=mRNA_1472|Name=jgi.p|Nanoce1779_2|572255|organism=Nannochloropsis oceanica|type=mRNA|length=641bp
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGATCAA
TTCATTACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAA
CTACTGAGCCCCAGATCCATCAGGCTTTCTCCAAGGTTGGTTCCATCAAG
CGCGTCATCATGGGCCTCAACCGATTTACCAAGGAGCCCTGCGGCTTTTG
CTTTGTCGAGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTT
TGCACGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGG
GGCTACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGT
GCGCGATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGC
GGGCGGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATT
CCTCCATCCATAGTTTCTGGGAGACGGCCGCAGCGGCCTGGAGTGCCATA
ATATTTTGCATTGGGTGCGTCGGCTGTGTGCGGGGGTGGTGTACAAATCG
AGAAAGGAAATTCAAAAGAAAACAAAAACAGAATATTGCGA
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protein sequence of jgi.p|Nanoce1779_2|572255

>mRNA_1472-protein ID=mRNA_1472-protein|Name=jgi.p|Nanoce1779_2|572255|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIVSGRRPQRPGVP*
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mRNA from alignment at scaffold_1:708520..709736+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1472 ID=mRNA_1472|Name=jgi.p|Nanoce1779_2|572255|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at scaffold_1:708520..709736+ (Nannochloropsis oceanica)
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGGTAAG
CTTTTGCGGGGAGCCATTGGACGTAAGTGCGCGGTGCCTTTCGACAACCT
CCTTTGCCCTGACCAGTCAGACCAAAGCATTCCCAGCTTGGAAGAGTATT
ATTTTCCTCTGCAGTCGACAAGCGCCGTAACGGAGCCCGTCGGTCATGCT
TGAGGAGGCAGACAGACGGACACGACCGAGAAACTTTCCGTCAAGGCCGC
CGCGGATGCTCACACACCAATAACATGCACATGTGCACAGATCAATTCAT
TACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACT
GAGCCCCAGATCCATCAGGCTTTCTCCAAGGTACGAACTGCGTTTTGTTA
GCTGAAACTATCACTCTCACTACTCTTACGCCGTTATCCCAAACCCCTAT
TGGGGTCAAATAGGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACC
GATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAGTGCGTTATGGGT
TTGAGGAAGGATGAGTTGGAGATGGCCGGGAGTAAGGTGTCTGCTGCAAT
TCCAATTTCCAGCACTCTCACTCCCGCATAATGTATTTAGCTCTGACCTT
TACCCCATGTCTATTTAAACATTTCATACCTACACTTGGTCATGTTTTTG
CGCAGGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCA
CGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCT
ACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGC
GATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGC
GGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTC
CATCCATAGGTAAGGTTGGAGCACAGAAAGCGGTGGGATGACAGCTATCA
CAACACACCATTCAAATGTTCTGTATTACATACATACAGTTTCTGGGAGA
CGGCCGCAGCGGCCTGGAGTGCCATAATATTTTGCATTGGGTGCGTCGGC
TGTGTGCGGGGGTGGTGTACAAATCGAGAAAGGAAATTCAAAAGAAAACA
AAAACAGAATATTGCGA
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Coding sequence (CDS) from alignment at scaffold_1:708520..709736+

>mRNA_1472 ID=mRNA_1472|Name=jgi.p|Nanoce1779_2|572255|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_1:708520..709736+ (Nannochloropsis oceanica)
ATGGCGGAACTTTTGGACACGGACCCGCAGCCGTTGGTGTACTGGGATCG
CAAGCAGTTCACGAACTTCCAGGACCAGATCAATTCATTACGGGGTACCA
AGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACTGAGCCCCAGATC
CATCAGGCTTTCTCCAAGGTTGGTTCCATCAAGCGCGTCATCATGGGCCT
CAACCGATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAGTACTTTG
AACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCACGGTACCACCTTA
GACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCTACCACCCGTCCAG
ACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGCGATGAAAAGCGCT
TGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGCGGCCATGTATCAA
TCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTCCATCCATAGTTTC
TGGGAGACGGCCGCAGCGGCCTGGAGTGCCATAAATGGCGGAACTTTTGG
ACACGGACCCGCAGCCGTTGGTGTACTGGGATCGCAAGCAGTTCACGAAC
TTCCAGGACCAGATCAATTCATTACGGGGTACCAAGGTAGTATACATTGG
AAATCTCAGCTTTCAAACTACTGAGCCCCAGATCCATCAGGCTTTCTCCA
AGGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACCGATTTACCAAG
GAGCCCTGCGGCTTTTGCTTTGTCGAGTACTTTGAACATCAGTGCGCGCT
GGACGCCGTTGCCTTTTTGCACGGTACCACCTTAGACGAGCGCATCGTTC
GCGTGGAGCTGGACTGGGGCTACCACCCGTCCAGACGGTACGGTCGCGGG
GAAAGCGGTGGTCAGGTGCGCGATGAAAAGCGCTTGGACTACGACGAAGG
CCGTGGTGGCTATGGGCGGGCGGCCATGTATCAATCGATGTCTGATCCCC
TTGCCGAGGCACCCATTCCTCCATCCATAGTTTCTGGGAGACGGCCGCAG
CGGCCTGGAGTGCCATAAATGGCGGAACTTTTGGACACGGACCCGCAGCC
GTTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGATCA
ATTCATTACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAA
ACTACTGAGCCCCAGATCCATCAGGCTTTCTCCAAGGTTGGTTCCATCAA
GCGCGTCATCATGGGCCTCAACCGATTTACCAAGGAGCCCTGCGGCTTTT
GCTTTGTCGAGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTT
TTGCACGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTG
GGGCTACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGG
TGCGCGATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGG
CGGGCGGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCAT
TCCTCCATCCATAGTTTCTGGGAGACGGCCGCAGCGGCCTGGAGTGCCAT
AAATGGCGGAACTTTTGGACACGGACCCGCAGCCGTTGGTGTACTGGGAT
CGCAAGCAGTTCACGAACTTCCAGGACCAGATCAATTCATTACGGGGTAC
CAAGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACTGAGCCCCAGA
TCCATCAGGCTTTCTCCAAGGTTGGTTCCATCAAGCGCGTCATCATGGGC
CTCAACCGATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAGTACTT
TGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCACGGTACCACCT
TAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCTACCACCCGTCC
AGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGCGATGAAAAGCG
CTTGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGCGGCCATGTATC
AATCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTCCATCCATAGTT
TCTGGGAGACGGCCGCAGCGGCCTGGAGTGCCATAAATGGCGGAACTTTT
GGACACGGACCCGCAGCCGTTGGTGTACTGGGATCGCAAGCAGTTCACGA
ACTTCCAGGACCAGATCAATTCATTACGGGGTACCAAGGTAGTATACATT
GGAAATCTCAGCTTTCAAACTACTGAGCCCCAGATCCATCAGGCTTTCTC
CAAGGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACCGATTTACCA
AGGAGCCCTGCGGCTTTTGCTTTGTCGAGTACTTTGAACATCAGTGCGCG
CTGGACGCCGTTGCCTTTTTGCACGGTACCACCTTAGACGAGCGCATCGT
TCGCGTGGAGCTGGACTGGGGCTACCACCCGTCCAGACGGTACGGTCGCG
GGGAAAGCGGTGGTCAGGTGCGCGATGAAAAGCGCTTGGACTACGACGAA
GGCCGTGGTGGCTATGGGCGGGCGGCCATGTATCAATCGATGTCTGATCC
CCTTGCCGAGGCACCCATTCCTCCATCCATAGTTTCTGGGAGACGGCCGC
AGCGGCCTGGAGTGCCATAA
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Synonyms
Publications