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Properties
| Property Name | Value |
|---|
| TranscriptId | 667491 |
| Track | FilteredModels2 |
| ProteinId | 667405 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:615423..617819 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1468 ID=mRNA_1468|Name=jgi.p|Nanoce1779_2|667405|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
ACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGAGCTG
CCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCCGACC
AGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATGCGCC
AATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACGGGAC
AGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGCATAC
ACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCAGCAC
AGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCCCCAG
GAAGTGGCCTGTCGGCAGCAGGACTGTCCGCCTTGTCATCTATGCTGGGA
TTCACCAAGCGAAAGAGCGTACAGCGGCAGGACACGATCGAAGGGCAAGT
GCGCGTGAGCACCGTCAAGAAGGATGGTCCGGACTTTGGGGACCTGAAGG
TCTCTCAGTGCTTGCAGGCGCACGACGGGCCCATCTGGACGATGAAGTTC
AGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTA
TGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGG
AGGCACCTGTGACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTG
TTGCGTCTGTCGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGAT
TGATCTGTCGTGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACA
AGACCGTGCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTAC
CCGCACGTGGACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCA
TTTGTTTTTATCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGA
CCGACGGGCGGGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCC
GCCTGCTTCAACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGG
CCAGGTATTTTTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTG
AATGCCGCAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGC
CTGTGCTACGACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTC
CCTATCCTCTTTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACA
CAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATC
CTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTC
GCGCCTCCGTCTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACA
AGGGCCTGACGAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGAC
GGGGAGTACGTGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAA
AGGCACCACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCG
CTCCGCTTACCTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCT
GCCACGGAGATAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTT
TGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGG
AGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATT
GCTGCGGATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGAC
TGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGG
GAATGGGAATGTATTAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGC
GGGCATGTATGCATATGCATGGCAAGGTCAGACACACAGGGCTTTTATTT
TGGTGGTTTTAAGGCATCTTCGCGAGGGATGTTGATTTCAGAACGACACA
ACAAAGCAATATACACCGGAAAGACTTATCATACAGCAGCGAGTCCGCCG
CTGCCAAAAAG back to topprotein sequence of jgi.p|Nanoce1779_2|667405 >mRNA_1468-protein ID=mRNA_1468-protein|Name=jgi.p|Nanoce1779_2|667405|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MADDAPINVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQ
RLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQD
TIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAG
QSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRD
HTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHF
HPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAV
AGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSQHKA
AAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSSTGILAGGAGSEQLL
ITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENG
QIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPI
VSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVF
QRHSLTVGSSGGTSPVKTA* back to topmRNA from alignment at scaffold_1:615423..617819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1468 ID=mRNA_1468|Name=jgi.p|Nanoce1779_2|667405|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp|location=Sequence derived from alignment at scaffold_1:615423..617819- (Nannochloropsis oceanica)
ACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGAGCTG
CCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCCGACC
AGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATGCGCC
AATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACGGGAC
AGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGCATAC
ACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCAGCAC
AGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCCCCAG
GAAGTAAGTAGTGATGCGTGAATAGTAACGTTGCCTCTCTATTTGCCAAA
GCGATGTATGTTATGAATTCCGACCTTCTTCACTGATGTGGTAGAAAGCT
TGTCGCTGGGGATATCGCAGCTTATCTCTCACAGCCCCCTTTGCCCTTCA
TCGTTCAAGTGCACATGCTTCTCTGCTCACGACACTCCTCACTCTATTCA
CATCCACTTTTGCCCGCAATTACTCAGGTGGCCTGTCGGCAGCAGGACTG
TCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTACAGCG
GCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAGGATG
GTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGGTGCGTACT
TTCTTGCTTTTGCATCTCTTCTTTCCGAATCCCTCAACCCCTTTCAACTT
GGCCATTTCTTCTCTTACCCACCTATTCTTCTCCTCTGTCCTTACCTCAC
GAGGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGGGAGA
GTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACGGTAG
GTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGTGACG
GACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGTCGCC
CCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCGTGGA
ACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCGGCTG
TGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGGACTG
CGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTATCGG
GCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCGGGTC
AAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCAACCC
CGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTTTTTT
ATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAACCGC
CATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACGACAC
TTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCTTTGT
CCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTCCTCC
TCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCGGGGC
AGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGTCTGT
ACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGACGAAT
GACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACGTGAT
TTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACTCCGC
AACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTACCTTC
AAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGATAGG
TGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCAGCCG
CTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGTGGGG
GTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATTACTC
GGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGTAGTG
GGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGGGAATGGGAATGTAT
TAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGCGGGCATGTATGCAT
ATGCATGGCAAGGTCAGACACACAGGGCTTTTATTTTGGTGGTTTTAAGG
CATCTTCGCGAGGGATGTTGATTTCAGAACGACACAACAAAGCAATATAC
ACCGGAAAGACTTATCATACAGCAGCGAGTCCGCCGCTGCCAAAAAG back to topCoding sequence (CDS) from alignment at scaffold_1:615423..617819- >mRNA_1468 ID=mRNA_1468|Name=jgi.p|Nanoce1779_2|667405|organism=Nannochloropsis oceanica|type=CDS|length=5130bp|location=Sequence derived from alignment at scaffold_1:615423..617819- (Nannochloropsis oceanica)
GCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGGGAGAGTT
TTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACGGTAGGTG
GCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGTGACGGAC
GAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGTCGCCCCA
CCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCGTGGAACA
AAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCGGCTGTGG
CACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGGACTGCGT
CACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTATCGGGCA
ATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCGGGTCAAG
GAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCAACCCCGA
GGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTTTTTTATC
AGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAACCGCCAT
GGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACGACACTTC
TTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCTTTGTCCA
CATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTCCTCCTCA
TCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCGGGGCAGG
CTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGTCTGTACC
AAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGACGAATGAC
CACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACGTGATTTC
TGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACTCCGCAAC
AGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTACCTTCAAG
AAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGATAGGTGG
TGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCAGCCGCTG
TGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGTGGGGGTG
GGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATTACTCGGG
CAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGTAGTGGGG
GAACTAGTCCTGTGAAGACGGCATGAGTGGCCTGTCGGCAGCAGGACTGT
CCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTACAGCGG
CAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAGGATGG
TCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGATGGCGGACG
ATGCGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGAT
ACGGGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAA
CGCATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCT
CCAGCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCT
TCCCCAGGAAGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGC
GGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGG
ACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACC
TGTGACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTC
TGTCGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTG
TCGTGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGT
GCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACG
TGGACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTT
TTATCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGG
GCGGGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCT
TCAACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTA
TTTTTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCG
CAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCT
ACGACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCC
TCTTTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTC
CTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCG
GCGGGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTC
CGTCTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCT
GACGAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGT
ACGTGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACC
ACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCT
TACCTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGG
AGATAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCC
GCAGCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATG
GGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGG
ATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGA
AGTAGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGTGGCCTGTCGGCA
GCAGGACTGTCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAG
CGTACAGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCA
AGAAGGATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAG
ATGGCGGACGATGCGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGT
CGACAAAGATACGGGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACA
TAAATATCAACGCATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAG
CGGCTAGCCTCCAGCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGA
GTCAACGTCTTCCCCAGGAAGCGCACGACGGGCCCATCTGGACGATGAAG
TTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGT
GTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAG
AGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAG
CTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATCACACTGCCGACGT
GATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTG
ACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTC
TACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGA
CCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATG
TGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCCCGACATGATTACA
GCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCG
GGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAG
TTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACC
GGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGC
CTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACCACAGGAGGGAATA
ACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGC
ATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCATTACCACAAACGA
CTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCCATGCTCTGCAAAT
ACAAGGGCCTGACGAATGACCACATGCAGATCAAAGCCACTTTTAGTGAG
GACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGACAGATATATATCTG
GAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGA
GCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTC
CCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCT
GTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATG
AGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATC
ATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCT
GACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGTGG
CCTGTCGGCAGCAGGACTGTCCGCCTTGTCATCTATGCTGGGATTCACCA
AGCGAAAGAGCGTACAGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTG
AGCACCGTCAAGAAGGATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCA
GTGCTTGCAGATGGCGGACGATGCGCCAATCAACGTGGAGCAGCTGCGCT
TCCAGGTGGTCGACAAAGATACGGGACAGGTCTTTCGCATCGACGAGATG
GAGCAGCACATAAATATCAACGCATACACTCTCTTTCCGTCGCGGGACGA
GCTTGCGCAGCGGCTAGCCTCCAGCACAGCAGGGCAGGGAGGAGAAGACT
CGGACGACGAGTCAACGTCTTCCCCAGGAA back to top
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