jgi.p|Nanoce1779_2|572186, mRNA_1467 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572186
Unique Name	mRNA_1467
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	821
Alignment location	scaffold_1:613678..615001 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572272
Track	FilteredModels2
ProteinId	572186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:613678..615001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572186	gene_1467	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572186	mRNA_1467-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1467	CDS_1467	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:613678..615001+
coding sequence from alignment at scaffold_1:613678..615001+

mRNA sequence

>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Nanoce1779_2|572186|organism=Nannochloropsis oceanica|type=mRNA|length=821bp
ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT
TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCCAG
CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC
TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC
TAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACATCCATCATTACACGC
TTTATGTACGACACCTTTGAGAAGAACTACCAGGCCACGATCGGCATCGA
TTTTCTGTCCAAGACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGC
TGTGGGACACAGCGGGGCAGGAACGATTTCGGAGCTTGATTCCGAGCTAC
ATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACAAATCGTGC
CTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGCGCG
GGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGTGAT
CGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGAGAA
TATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGCCCC
TCTTCCGGAAGCTTGCCACAGCCTTGCCAGGCATGGAATCCGCCCAGAGC
CAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGCAAC
TTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGCGTG
GCGGAGGGAGAGGAAAGAGGA

protein sequence of jgi.p|Nanoce1779_2|572186

>mRNA_1467-protein ID=mRNA_1467-protein|Name=jgi.p|Nanoce1779_2|572186|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MAATSPVMSPSSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFE
KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA
VVVYDITNRASFLNTSKWVEDVRNERGNDVIIMLVGNKTDLSDRRQVSTE
EGEDKAKQENIMFIETSAKAGFNIKPLFRKLATALPGMESAQSQGSANLI
DIKLAATPATSSSDEAEARSRCSC*

mRNA from alignment at scaffold_1:613678..615001+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Nanoce1779_2|572186|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_1:613678..615001+ (Nannochloropsis oceanica)
ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT
TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCCAG
CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC
TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC
TAGGTGAGTGGAGAAGGGGCAGGTGGAGCAAGAGATAGAGCACGGACTTG
CAGCATACACTTCTTTCCGGTTGCCGTCCTTGAGACTCACCCGTGCCTTT
ATGGCTGTATATTTTAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACAT
CCATCATTACACGCTTTATGTACGACACCTTTGAGAAGAACTACCAGGTG
CGTGTATACTCAAAAGATCGTGGGATGGGCCGGTCTGAGGGGTGGGAGGA
GAGAGATGCATGCATGCTGGAGCCACTCAATCCACGCCTTTTTCTTATTT
CTCTTTCTACGATACAACAGGCCACGATCGGCATCGATTTTCTGTCCAAG
ACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGC
GGGGCAGGAGTAAGTATTACTGACAGACTTGTGAAAGGAAGTATTACTGA
TAGACTTGTGAAAGGAATATGTCCTTACATATGTCGCATCTCGATTACTT
ATCGCGTTTCTTCTATCATTTCTTCCTCAGACGATTTCGGAGCTTGATTC
CGAGCTACATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACA
AGTAAGTGCATGCATCATTGATGGAAGAGAGCGCCTTTTTGACAGGGCTA
TCGCCAAGTTCTGTGTCCGTGCGGTTGGTCGGCTTACACCCATGCCATCT
TTTTCCACGTTCGGTCACCTGACTTCTCACACCTTATCAACCCTAGATCG
TGCCTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGC
GCGGGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGT
GATCGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGA
GAATATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGC
CCCTCTTCCGGAAGCTTGCCACAGCCTTGCCAGGCATGGAATCCGCCCAG
AGCCAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGC
AACTTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGC
GTGGCGGAGGGAGAGGAAAGAGGA

Coding sequence (CDS) from alignment at scaffold_1:613678..615001+

>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Nanoce1779_2|572186|organism=Nannochloropsis oceanica|type=CDS|length=3375bp|location=Sequence derived from alignment at scaffold_1:613678..615001+ (Nannochloropsis oceanica)
ATGGCAGCCACGTCCCCCGTCATGTCTCCTTCGTCACCGGCATCCCTGCC
TCAGATACCTTCATTGGCCAAGTACAAGCTAGTCTTTTTAGGGGATCAAG
GCGTGGGAAAGACATCCATCATTACACGCTTTATGTACGACACCTTTGAG
AAGAACTACCAGGCCACGATCGGCATCGATTTTCTGTCCAAGACCATGTA
CTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGCGGGGCAGG
AACGATTTCGGAGCTTGATTCCGAGCTACATTCGGGACTCCTCCGTGGCC
GTGGTCGTGTACGACATCACAAATCGTGCCTCCTTTTTGAACACGTCCAA
GTGGGTGGAGGACGTGCGGAATGAGCGCGGGAACGACGTCATCATCATGC
TTGTCGGCAACAAGACGGATTTGAGTGATCGGCGGCAAGTGTCGACAGAA
GAAGGTGAGGACAAGGCGAAGCAAGAGAATATCATGTTCATCGAGACGTC
CGCCAAGGCGGGATTCAACATCAAGCCCCTCTTCCGGAAGCTTGCCACAG
CCTTGCCAGGCATGGAATCCGCCCAGAGCCAAGGCAGTGCCAACCTTATT
GACATCAAGCTAGCTGCCACTCCTGCAACTTCTTCTTCTGACGAAGCCGA
GGCCAGATCACGCTGTTCGTGTTAGATGGCAGCCACGTCCCCCGTCATGT
CTCCTTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTAC
AAGCTAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACATCCATCATTAC
ACGCTTTATGTACGACACCTTTGAGAAGAACTACCAGGCCACGATCGGCA
TCGATTTTCTGTCCAAGACCATGTACTTGGAGGACCGCACCGTTCGACTG
CAGCTGTGGGACACAGCGGGGCAGGAACGATTTCGGAGCTTGATTCCGAG
CTACATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACAAATC
GTGCCTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAG
CGCGGGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAG
TGATCGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAG
AGAATATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAG
CCCCTCTTCCGGAAGCTTGCCACAGCCTTGCCAGGCATGGAATCCGCCCA
GAGCCAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTG
CAACTTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAG
ATGGCAGCCACGTCCCCCGTCATGTCTCCTTCGTCACCGGCATCCCTGCC
TCAGATACCTTCATTGGCCAAGTACAAGCTAGTCTTTTTAGGGGATCAAG
GCGTGGGAAAGACATCCATCATTACACGCTTTATGTACGACACCTTTGAG
AAGAACTACCAGGCCACGATCGGCATCGATTTTCTGTCCAAGACCATGTA
CTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGCGGGGCAGG
AACGATTTCGGAGCTTGATTCCGAGCTACATTCGGGACTCCTCCGTGGCC
GTGGTCGTGTACGACATCACAAATCGTGCCTCCTTTTTGAACACGTCCAA
GTGGGTGGAGGACGTGCGGAATGAGCGCGGGAACGACGTCATCATCATGC
TTGTCGGCAACAAGACGGATTTGAGTGATCGGCGGCAAGTGTCGACAGAA
GAAGGTGAGGACAAGGCGAAGCAAGAGAATATCATGTTCATCGAGACGTC
CGCCAAGGCGGGATTCAACATCAAGCCCCTCTTCCGGAAGCTTGCCACAG
CCTTGCCAGGCATGGAATCCGCCCAGAGCCAAGGCAGTGCCAACCTTATT
GACATCAAGCTAGCTGCCACTCCTGCAACTTCTTCTTCTGACGAAGCCGA
GGCCAGATCACGCTGTTCGTGTTAGATGGCAGCCACGTCCCCCGTCATGT
CTCCTTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTAC
AAGCTAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACATCCATCATTAC
ACGCTTTATGTACGACACCTTTGAGAAGAACTACCAGGCCACGATCGGCA
TCGATTTTCTGTCCAAGACCATGTACTTGGAGGACCGCACCGTTCGACTG
CAGCTGTGGGACACAGCGGGGCAGGAACGATTTCGGAGCTTGATTCCGAG
CTACATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACAAATC
GTGCCTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAG
CGCGGGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAG
TGATCGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAG
AGAATATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAG
CCCCTCTTCCGGAAGCTTGCCACAGCCTTGCCAGGCATGGAATCCGCCCA
GAGCCAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTG
CAACTTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAG
ATGGCAGCCACGTCCCCCGTCATGTCTCCTTCGTCACCGGCATCCCTGCC
TCAGATACCTTCATTGGCCAAGTACAAGCTAGTCTTTTTAGGGGATCAAG
GCGTGGGAAAGACATCCATCATTACACGCTTTATGTACGACACCTTTGAG
AAGAACTACCAGGCCACGATCGGCATCGATTTTCTGTCCAAGACCATGTA
CTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGCGGGGCAGG
AACGATTTCGGAGCTTGATTCCGAGCTACATTCGGGACTCCTCCGTGGCC
GTGGTCGTGTACGACATCACAAATCGTGCCTCCTTTTTGAACACGTCCAA
GTGGGTGGAGGACGTGCGGAATGAGCGCGGGAACGACGTCATCATCATGC
TTGTCGGCAACAAGACGGATTTGAGTGATCGGCGGCAAGTGTCGACAGAA
GAAGGTGAGGACAAGGCGAAGCAAGAGAATATCATGTTCATCGAGACGTC
CGCCAAGGCGGGATTCAACATCAAGCCCCTCTTCCGGAAGCTTGCCACAG
CCTTGCCAGGCATGGAATCCGCCCAGAGCCAAGGCAGTGCCAACCTTATT
GACATCAAGCTAGCTGCCACTCCTGCAACTTCTTCTTCTGACGAAGCCGA
GGCCAGATCACGCTGTTCGTGTTAG

Synonyms

Publications