jgi.p|Nanoce1779_2|572165, mRNA_1464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572165
Unique NamemRNA_1464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length796
Alignment locationscaffold_1:610138..611028 +

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Properties
Property NameValue
TranscriptId572251
TrackFilteredModels2
ProteinId572165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:610138..611028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572165gene_1464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572165mRNA_1464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1464CDS_1464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1464 ID=mRNA_1464|Name=jgi.p|Nanoce1779_2|572165|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
ACAGGCCCCCTCCCAAAACACCCACCCCATCTACGATCATGGCTGGCAAA
GACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGCCAAGAAGGCTGC
GGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACATGAAGAAGCAAA
TTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACACAAGGAGGCCTTC
ACCCAGTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAACCCCAACAAGGG
CAAGTAAGTCAAGCATGCGGCTTGCGGTAGCCATGGTTTTGGGGCAACTG
AGGGAGTGGTTGGCCGTTTCATTCTCTTAGGGTCCATTTTTTTTCGAGAT
CCCTTCCATCGATGGTTGAATGGTTTGGTTCCCTTCCTCTTATTGTCCTG
GGGCTTGGGGTTTGTTTTCGCATTTTCTCACTCTCTTTTCTTGGACAAAG
GTTGACAAAACTGAGGCGATTCAAAAGTTTACGTTCCCTCTTGCCTGAAG
TTGTGGGATGGAGGGAGAAGGAAGGGGTGGGGGATTTGACATGGATGGCG
ATTACAGGAAGAAACAAGAAATGGAAGCTTGCTACATGTCACCGTCACCC
AAGAACGCAGTGCAACGCAAGACGAGAATTTAAAAGAATGTATATTCACA
GAACGGCCACCCCTTAATAAGAATCGGCCAAGCGTGACAAAATTCAGGAG
AGAAGATGAATAAGTAAACCTCATGCAGCCATTTTCTCGGACAGCGAACC
AAAAAAAAAGTGAACAAAGGGTATTTATCTGAATCATGCATGTATT
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protein sequence of jgi.p|Nanoce1779_2|572165

>mRNA_1464-protein ID=mRNA_1464-protein|Name=jgi.p|Nanoce1779_2|572165|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MAGKDTNKSTPKKTTPAKKAAGAKKEPTLYMLYMKKQIAVFKAKNPSLSH
KEAFTQLAKAWKTAPENPNKGK*
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mRNA from alignment at scaffold_1:610138..611028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1464 ID=mRNA_1464|Name=jgi.p|Nanoce1779_2|572165|organism=Nannochloropsis oceanica|type=mRNA|length=891bp|location=Sequence derived from alignment at scaffold_1:610138..611028+ (Nannochloropsis oceanica)
ACAGGCCCCCTCCCAAAACACCCACCCCATCTACGATCATGGCTGGCAAA
GACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGCCAAGAAGGCTGC
GGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACATGAAGAAGCAAA
TTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACACAAGGAGGCCTTC
ACCCAGGTTGGTGCTTCAAGACGTTCACTAGCATTTATTTCCTGAAGCAC
GTCCCTCCACCCACACAAGTACACATAAATGTATTCACCCCATTCTTACA
GTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAACCCCAACAAGGGCAAGT
AAGTCAAGCATGCGGCTTGCGGTAGCCATGGTTTTGGGGCAACTGAGGGA
GTGGTTGGCCGTTTCATTCTCTTAGGGTCCATTTTTTTTCGAGATCCCTT
CCATCGATGGTTGAATGGTTTGGTTCCCTTCCTCTTATTGTCCTGGGGCT
TGGGGTTTGTTTTCGCATTTTCTCACTCTCTTTTCTTGGACAAAGGTTGA
CAAAACTGAGGCGATTCAAAAGTTTACGTTCCCTCTTGCCTGAAGTTGTG
GGATGGAGGGAGAAGGAAGGGGTGGGGGATTTGACATGGATGGCGATTAC
AGGAAGAAACAAGAAATGGAAGCTTGCTACATGTCACCGTCACCCAAGAA
CGCAGTGCAACGCAAGACGAGAATTTAAAAGAATGTATATTCACAGAACG
GCCACCCCTTAATAAGAATCGGCCAAGCGTGACAAAATTCAGGAGAGAAG
ATGAATAAGTAAACCTCATGCAGCCATTTTCTCGGACAGCGAACCAAAAA
AAAAGTGAACAAAGGGTATTTATCTGAATCATGCATGTATT
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Coding sequence (CDS) from alignment at scaffold_1:610138..611028+

>mRNA_1464 ID=mRNA_1464|Name=jgi.p|Nanoce1779_2|572165|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_1:610138..611028+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGC
CAAGAAGGCTGCGGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACA
TGAAGAAGCAAATTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACAC
AAGGAGGCCTTCACCCAGTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAA
CCCCAACAAGGGCAAGTAAATGGCTGGCAAAGACACCAATAAGTCTACTC
CCAAGAAGACGACCCCCGCCAAGAAGGCTGCGGGTGCCAAGAAGGAGCCT
ACCCTTTACATGTTGTACATGAAGAAGCAAATTGCCGTCTTCAAGGCTAA
GAACCCTTCCCTCTCACACAAGGAGGCCTTCACCCAGTTGGCCAAGGCCT
GGAAGACCGCCCCCGAGAACCCCAACAAGGGCAAGTAA
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Synonyms
Publications