jgi.p|Nanoce1779_2|572161, mRNA_1463 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572161
Unique NamemRNA_1463
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_1:608997..609860 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572247
TrackFilteredModels2
ProteinId572161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:608997..609860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572161gene_1463Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572161mRNA_1463-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1463CDS_1463Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Nanoce1779_2|572161|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
ACAGATGGCCACGCAACAGTCCTCATGTACAAGGCAACCATGAGCAAATG
GGCCTGGGGACATATGCAAACAAGGCATGCAAAGGGAGGGTACAGGAGTG
TGAGGCTGCATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGC
AGCGTTGACTCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTC
CTACACCACAACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACC
TTTGACGAGGAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGA
TACATTGCTCGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGG
CCGCGTCTTGCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAG
GCAGCGCATGCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCT
CGCTCATAGCGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCAT
GTGGTTCGTATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACG
GGAGTGTCTCAGCGGACGTGGTCCTGACCCATGAGTCTTGCAGTGCGAGT
TGTAGTGCTATCTTTACGAGCGAAAATGGGAAACTATCACCTGAACCTTT
TTCATTCAGCGAAATCAAATCAAAATATGAAATAAGATAAATAATTTGGG
CGTGAAAATTAGAACAACCACA
back to top

protein sequence of jgi.p|Nanoce1779_2|572161

>mRNA_1463-protein ID=mRNA_1463-protein|Name=jgi.p|Nanoce1779_2|572161|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGNCLGGGGVGGAAALTHSPPPAAVAPAAAPTPQPSLPPPPDRPMPTFDE
ERLRELSTVVDLRDTLLGFIKHGRALVEEVAASCTESAEDCTSRTAKAAH
ALKGAAKTIGASRLAHSAEIIELRAKQGESCGSYVPDLSAAYEDLATGVS
QRTWS*
back to top

mRNA from alignment at scaffold_1:608997..609860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Nanoce1779_2|572161|organism=Nannochloropsis oceanica|type=mRNA|length=864bp|location=Sequence derived from alignment at scaffold_1:608997..609860- (Nannochloropsis oceanica)
ACAGATGGCCACGCAACAGTCCTCATGTACAAGGCAACCATGAGCAAATG
GGCCTGGGGACATATGCAAACAAGGCATGCAAAGGGAGGGTACAGGTAAC
GCGGCAACAAACACACGACAGAAGTTATAATAAGAGGGAACTTCTTGAAG
AAACCCCCCGCGGGAGTCTCAGAGAGGAGTCCTCCCCTAAAACAACCTCC
CCCGCGCTAAAATGACCTTCCACCCATACAAATACAGGAGTGTGAGGCTG
CATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGCAGCGTTGA
CTCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTCCTACACCA
CAACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACCTTTGACGA
GGAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGATACATTGC
TCGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGGCCGCGTCT
TGCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAGGCAGCGCA
TGCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCTCGCTCATA
GCGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCATGTGGTTCG
TATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACGGGAGTGTC
TCAGCGGACGTGGTCCTGACCCATGAGTCTTGCAGTGCGAGTTGTAGTGC
TATCTTTACGAGCGAAAATGGGAAACTATCACCTGAACCTTTTTCATTCA
GCGAAATCAAATCAAAATATGAAATAAGATAAATAATTTGGGCGTGAAAA
TTAGAACAACCACA
back to top

Coding sequence (CDS) from alignment at scaffold_1:608997..609860-

>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Nanoce1779_2|572161|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_1:608997..609860- (Nannochloropsis oceanica)
ATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGCAGCGTTGAC
TCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTCCTACACCAC
AACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACCTTTGACGAG
GAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGATACATTGCT
CGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGGCCGCGTCTT
GCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAGGCAGCGCAT
GCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCTCGCTCATAG
CGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCATGTGGTTCGT
ATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACGGGAGTGTCT
CAGCGGACGTGGTCCTGA
back to top
Synonyms
Publications