jgi.p|Nanoce1779_2|522435, mRNA_1459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522435
Unique NamemRNA_1459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length612
Alignment locationscaffold_1:597747..598507 -

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Properties
Property NameValue
TranscriptId522521
TrackFilteredModels2
ProteinId522435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:597747..598507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522435gene_1459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522435mRNA_1459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1459CDS_1459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1459 ID=mRNA_1459|Name=jgi.p|Nanoce1779_2|522435|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGATGATTTTCATGG
ACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGTTGATGTCGGTA
GCCTGCATATTCTCGGGAGTGCTGCATGGGTACCCTTCCTGTTCATGTTG
GCGGGCATCATTATGGGTTCCCTGACCGTCCTTCTTGACAAATGGTTTAA
AACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGTGCTCAAAGCCA
TCTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCCTGTCAGGGATC
TACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTGGGTCTGGCCAC
GATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTTGGCGGTGGGTG
CGGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCTGACAGGTTTG
ACAAATTTGTACCATTATACGTCACCCGACTATTATAGCGTCCCTTCATG
GATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGTAACCTTGCTC
GTGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAGAGATTAGTGGC
CGGGGAAGATGA
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protein sequence of jgi.p|Nanoce1779_2|522435

>mRNA_1459-protein ID=mRNA_1459-protein|Name=jgi.p|Nanoce1779_2|522435|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MGVESALLGPFLDDFHGRTGVLVYREPVSVDVGSLHILGSAAWVPFLFML
AGIIMGSLTVLLDKWFKTPTDKLRPPPQEVLKAISLFSFQYYISGLLSGI
YLLDPFQINVVVLGLATICYLRFDRTLAGLAVGAATAVGGPVIELALTGL
TNLYHYTSPDYYSVPSWIPWVYLCGGPPVCNLARAQWLALQGRDKEEISG
RGR*
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mRNA from alignment at scaffold_1:597747..598507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1459 ID=mRNA_1459|Name=jgi.p|Nanoce1779_2|522435|organism=Nannochloropsis oceanica|type=mRNA|length=761bp|location=Sequence derived from alignment at scaffold_1:597747..598507- (Nannochloropsis oceanica)
ATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGATGATTTTCATGG
ACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGTTGATGTCGGTA
GCCTGCATATTCTCGGGAGTGCTGCATGGGTGAGTTATGTGTTTGTTGGT
TCGGGAGGTTGTTTCGTGTGTGTGTCTCAGTCCGAATCGCCCTAAGAGTT
ATTTTCAAATGACAGAGCGCCTTCTGTCTCCCTTAAATCCTAACCGTTCC
TATCCATTTCATGACCTCCTACTCTCAGGTACCCTTCCTGTTCATGTTGG
CGGGCATCATTATGGGTTCCCTGACCGTCCTTCTTGACAAATGGTTTAAA
ACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGTGCTCAAAGCCAT
CTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCCTGTCAGGGATCT
ACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTGGGTCTGGCCACG
ATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTTGGCGGTGGGTGC
GGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCTGACAGGTTTGA
CAAATTTGTACCATTATACGTCACCCGACTATTATAGCGTCCCTTCATGG
ATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGTAACCTTGCTCG
TGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAGAGATTAGTGGCC
GGGGAAGATGA
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Coding sequence (CDS) from alignment at scaffold_1:597747..598507-

>mRNA_1459 ID=mRNA_1459|Name=jgi.p|Nanoce1779_2|522435|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_1:597747..598507- (Nannochloropsis oceanica)
GTACCCTTCCTGTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACCGT
CCTTCTTGACAAATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGC
CGCAAGAGGTGCTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATT
TCGGGGCTCCTGTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGT
CGTGGTGTTGGGTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGT
TGGCTGGCTTGGCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATT
GAGCTGGCCCTGACAGGTTTGACAAATTTGTACCATTATACGTCACCCGA
CTATTATAGCGTCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGAC
CCCCGGTGTGTAACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGG
GATAAAGAAGAGATTAGTGGCCGGGGAAGATGAATGGGCGTGGAATCTGC
ATTGCTAGGCCCCTTTTTGGATGATTTTCATGGACGCACGGGTGTCCTTG
TCTATCGTGAGCCGGTGAGCGTTGATGTCGGTAGCCTGCATATTCTCGGG
AGTGCTGCATGGGTACCCTTCCTGTTCATGTTGGCGGGCATCATTATGGG
TTCCCTGACCGTCCTTCTTGACAAATGGTTTAAAACGCCTACCGACAAAT
TACGGCCCCCGCCGCAAGAGGTGCTCAAAGCCATCTCCCTCTTCAGCTTC
CAGTACTATATTTCGGGGCTCCTGTCAGGGATCTACCTGCTGGATCCCTT
TCAAATTAATGTCGTGGTGTTGGGTCTGGCCACGATTTGTTACCTTCGCT
TTGATCGAACGTTGGCTGGCTTGGCGGTGGGTGCGGCAACAGCGGTCGGT
GGTCCGGTTATTGAGCTGGCCCTGACAGGTTTGACAAATTTGTACCATTA
TACGTCACCCGACTATTATAGCGTCCCTTCATGGATTCCCTGGGTTTACT
TGTGTGGTGGACCCCCGGTGTGTAACCTTGCTCGTGCTCAATGGCTCGCT
TTACAAGGGAGGGATAAAGAAGAGATTAGTGGCCGGGGAAGATGAATGGG
CGTGGAATCTGCATTGCTAGGCCCCTTTTTGGATGATTTTCATGGACGCA
CGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGTTGATGTCGGTAGCCTG
CATATTCTCGGGAGTGCTGCATGG
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Synonyms
Publications