jgi.p|Nanoce1779_2|6612, mRNA_1457 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|6612
Unique Name	mRNA_1457
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1250
Alignment location	scaffold_1:594468..596225 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	6698
Track	FilteredModels2
ProteinId	6612

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:594468..596225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6612	gene_1457	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6612	mRNA_1457-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1457	CDS_1457	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:594468..596225+
coding sequence from alignment at scaffold_1:594468..596225+

mRNA sequence

>mRNA_1457 ID=mRNA_1457|Name=jgi.p|Nanoce1779_2|6612|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp
GGAACAGGCGGTAAACAAGGCATCCTCATTCTTCCCCGTTGCCTCAGGGA
TTTATGAAAGCGACGACAAGCTGCCTGTTTATGAGGGGTGGCAGTGACGC
TGAATTGTATTCGGAGGTAGAAAAGAAATAACCTGGCATAGATGGCTGCT
TGAATTCCCACTGCTCCCTCCACCAGGAGTACGTCAAACACCTTTTTCGA
AGCTTCCAAGTCCAACCCGGCTGCCGCGTGCCTCTTTCCACTACACAGCG
TCGATGTCCTTCCTCTCAACCACAACACACTCGCCACAGGCATGCCTCGC
TCCTTTTCCTGTCGCTCTCTTGTCGGTCTGAGTCTCATCATCTGCACGAC
GCTGGAGCAGGCCGCCCAGGCCTTCGTCATCGGTAGTAGCAGTAGCAGCA
GCAGCAGCAGCAGCAGCATTACGCCAGGTCCCAGCCGATGGCAGCGCCAG
GGTATCCGCACCATTATCTACTCATCACCGTCCAATAAGTTTTACGGCAA
CTCGTTCCAACCACTAGGCGCCCCGCCACCACAGGCCGACGAACCGCAAG
GAAGCTTTTCGCTAGGTTTGCAGTCCGAGACAGCAGGAACACAATTTGAG
CCCCTAGGTGTCGCCGTGGAAGAGGTGGGAGACGGCTCGGGCATAGTTTA
TGTTGTAGAAGCAGGAGACAAGGCCCAAGCAGCGGGGATGGAAGTGGGGG
ACGTGATTGTAGGATGCTCCTTCATTTTCGATGATTCATATTTGGTCAAC
GTGACGGGAAAGGGAGTGGAAAAGGTGGAATCGCTCATTCGGTCCCGTGG
GCCGGATTACGTGTGTTTGCGCGTGAAGAAGGGATGTGAGTACCATCTGT
TGGACAAGGAGGATCTCGACGCCATGCGGCGGGAATATGATGAGGAAGCC
ACCTTGGAGCCGGAGGAGAAAGAGGCACGATGGATTAAGTTGGCGCAGAG
TATTTTTATCGATGATTTGGGCTGGAGACCTGAGGGCGAGGAAGGAGAAG
AGGAAGAGGAGTCATGGTGAAGGAAAAGAGGGGCGAAAAGCACGCGCCAC
TCGCACATAATTTAGTTGAAACCCATATCCGAATTTGTACTCATCTTTGG
CCTGGTCCACCTCGCCAGACAGCAACAATGTTACCGCATTCGGGACGACC
CTCGACTCAAGCAATGCCGAGATCTTCCCACCGTTATCCACCGTCGTCAC
AAACCGCGACTGTTTCATGTTCACCTCCGCGCCTAGCACAGTCTGGCTGT

protein sequence of jgi.p|Nanoce1779_2|6612

>mRNA_1457-protein ID=mRNA_1457-protein|Name=jgi.p|Nanoce1779_2|6612|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MPRSFSCRSLVGLSLIICTTLEQAAQAFVIGSSSSSSSSSSSITPGPSRW
QRQGIRTIIYSSPSNKFYGNSFQPLGAPPPQADEPQGSFSLGLQSETAGT
QFEPLGVAVEEVGDGSGIVYVVEAGDKAQAAGMEVGDVIVGCSFIFDDSY
LVNVTGKGVEKVESLIRSRGPDYVCLRVKKGCEYHLLDKEDLDAMRREYD
EEATLEPEEKEARWIKLAQSIFIDDLGWRPEGEEGEEEEESW*

mRNA from alignment at scaffold_1:594468..596225+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1457 ID=mRNA_1457|Name=jgi.p|Nanoce1779_2|6612|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at scaffold_1:594468..596225+ (Nannochloropsis oceanica)
GGAACAGGCGGTAAACAAGGCATCCTCATTCTTCCCCGTTGCCTCAGGGA
TTTATGAAAGCGACGACAAGCTGCCTGTTTATGAGGGGTGGCAGTGACGC
TGAATTGTATTCGGAGGTAGAAAAGAAATAACCTGGCATAGATGGCTGCT
TGAATTCCCACTGCTCCCTCCACCAGGAGTACGTCAAACACCTTTTTCGA
AGCTTCCAAGTCCAACCCGGCTGCCGCGTGCCTCTTTCCACTACACAGCG
TCGATGTCCTTCCTCTCAACCACAACACACTCGCCACAGGCATGCCTCGC
TCCTTTTCCTGTCGCTCTCTTGTCGGTCTGAGTCTCATCATCTGCACGAC
GCTGGAGCAGGCCGCCCAGGCCTTCGTCATCGGTAGTAGCAGTAGCAGCA
GCAGCAGCAGCAGCAGCATTACGCCAGGTCCCAGCCGATGGCAGCGCCAG
GGTATCCGCACCATTATCTACTCATCACCGTCCAATAAGTTTTACGGCAA
CTCGTTCCAACGTAAGTCTGAATTCTTCCGAGCGGACTTATGCCACGCCT
GTGTACGCAGTGGCCTGAGTATTATTTAGCCAGTTGACCCTCGTGTCGTC
CTTGTCAACAAACGAAACCTGCCTTACAAATTCATGCTTTCGATCGCCTG
TGATCAAGATTTTCATTCAGGTCTCTCTCTTTCGCAAAACCCTTTGACCA
GCACTAGGCGCCCCGCCACCACAGGCCGACGAACCGCAAGGAAGCTTTTC
GCTAGGTTTGCAGTCCGAGACAGCAGGAACACAATTTGAGGTACGCTCTA
TCTCCGACTTGAGACGTTTATCTCATGTTTCTCTTCCTTCATACGACCCT
ATGCCTAAATCGAAACCCAGATTGGCGTTCCTCCAACGCACAATTCTTTT
TTTTTTCCCTCCCTTCGTAACAAGGAGTACATCGTCAACATCAGCAAGCC
CCTAGGTGTCGCCGTGGAAGAGGTGGGAGACGGCTCGGGCATAGTTTATG
TTGTAGAAGCAGGAGACAAGGCCCAAGCAGCGGGGATGGAAGTGGGGGAC
GTGATTGTAGGATGCTCCTTCATTTTCGATGATTCATATTTGGTCAACGT
GACGGGAAAGGGAGTGGAAAAGGTGGAATCGCTCATTCGGTCCCGTGGGC
CGGATTACGTGTGTTTGCGCGTGAAGAAGGGATGTGAGTACCATCTGTTG
GACAAGGAGGATCTCGACGCCATGCGGCGGGAATATGATGAGGAAGCCAC
CTTGGAGCCGGAGGAGAAAGAGGCACGATGGATTAAGTTGGCGCAGAGTA
TTTTTATCGATGATTTGGGCTGGAGACCTGAGGGCGAGGAAGGAGAAGAG
GAAGAGGAGTCATGGTGAAGGAAAAGAGGGGCGAAAAGCACGCGCCACTC
GCACATAAGTAAGTAAGACAGCGTGACCGCGAAAATGAAATAATCTGACA
TCGTGATCATGAAACACGACATTTTGTTCCTTTACTGACTTTGTTCTCGC
TTCGCGCATCCCCTCTCCCCTTTCCCTCACTTTCTCCCTCCCCCCCTTCC
ATCTCTCCTCCTCACAAGTTTAGTTGAAACCCATATCCGAATTTGTACTC
ATCTTTGGCCTGGTCCACCTCGCCAGACAGCAACAATGTTACCGCATTCG
GGACGACCCTCGACTCAAGCAATGCCGAGATCTTCCCACCGTTATCCACC
GTCGTCACAAACCGCGACTGTTTCATGTTCACCTCCGCGCCTAGCACAGT
CTGGCTGT

Coding sequence (CDS) from alignment at scaffold_1:594468..596225+

>mRNA_1457 ID=mRNA_1457|Name=jgi.p|Nanoce1779_2|6612|organism=Nannochloropsis oceanica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_1:594468..596225+ (Nannochloropsis oceanica)
ATGCCTCGCTCCTTTTCCTGTCGCTCTCTTGTCGGTCTGAGTCTCATCAT
CTGCACGACGCTGGAGCAGGCCGCCCAGGCCTTCGTCATCGGTAGTAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCATTACGCCAGGTCCCAGCCGATGG
CAGCGCCAGGGTATCCGCACCATTATCTACTCATCACCGTCCAATAAGTT
TTACGGCAACTCGTTCCAACCACTAGGCGCCCCGCCACCACAGGCCGACG
AACCGCAAGGAAGCTTTTCGCTAGGTTTGCAGTCCGAGACAGCAGGAACA
CAATTTGAGCCCCTAGGTGTCGCCGTGGAAGAGGTGGGAGACGGCTCGGG
CATAGTTTATGTTGTAGAAGCAGGAGACAAGGCCCAAGCAGCGGGGATGG
AAGTGGGGGACGTGATTGTAGGATGCTCCTTCATTTTCGATGATTCATAT
TTGGTCAACGTGACGGGAAAGGGAGTGGAAAAGGTGGAATCGCTCATTCG
GTCCCGTGGGCCGGATTACGTGTGTTTGCGCGTGAAGAAGGGATGTGAGT
ACCATCTGTTGGACAAGGAGGATCTCGACGCCATGCGGCGGGAATATGAT
GAGGAAGCCACCTTGGAGCCGGAGGAGAAAGAGGCACGATGGATTAAGTT
GGCGCAGAGTATTTTTATCGATGATTTGGGCTGGAGACCTGAGGGCGAGG
AAGGAGAAGAGGAAGAGGAGTCATGGTGAATGCCTCGCTCCTTTTCCTGT
CGCTCTCTTGTCGGTCTGAGTCTCATCATCTGCACGACGCTGGAGCAGGC
CGCCCAGGCCTTCGTCATCGGTAGTAGCAGTAGCAGCAGCAGCAGCAGCA
GCAGCATTACGCCAGGTCCCAGCCGATGGCAGCGCCAGGGTATCCGCACC
ATTATCTACTCATCACCGTCCAATAAGTTTTACGGCAACTCGTTCCAACC
ACTAGGCGCCCCGCCACCACAGGCCGACGAACCGCAAGGAAGCTTTTCGC
TAGGTTTGCAGTCCGAGACAGCAGGAACACAATTTGAGCCCCTAGGTGTC
GCCGTGGAAGAGGTGGGAGACGGCTCGGGCATAGTTTATGTTGTAGAAGC
AGGAGACAAGGCCCAAGCAGCGGGGATGGAAGTGGGGGACGTGATTGTAG
GATGCTCCTTCATTTTCGATGATTCATATTTGGTCAACGTGACGGGAAAG
GGAGTGGAAAAGGTGGAATCGCTCATTCGGTCCCGTGGGCCGGATTACGT
GTGTTTGCGCGTGAAGAAGGGATGTGAGTACCATCTGTTGGACAAGGAGG
ATCTCGACGCCATGCGGCGGGAATATGATGAGGAAGCCACCTTGGAGCCG
GAGGAGAAAGAGGCACGATGGATTAAGTTGGCGCAGAGTATTTTTATCGA
TGATTTGGGCTGGAGACCTGAGGGCGAGGAAGGAGAAGAGGAAGAGGAGT
CATGGTGAATGCCTCGCTCCTTTTCCTGTCGCTCTCTTGTCGGTCTGAGT
CTCATCATCTGCACGACGCTGGAGCAGGCCGCCCAGGCCTTCGTCATCGG
TAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCATTACGCCAGGTCCCA
GCCGATGGCAGCGCCAGGGTATCCGCACCATTATCTACTCATCACCGTCC
AATAAGTTTTACGGCAACTCGTTCCAACCACTAGGCGCCCCGCCACCACA
GGCCGACGAACCGCAAGGAAGCTTTTCGCTAGGTTTGCAGTCCGAGACAG
CAGGAACACAATTTGAGCCCCTAGGTGTCGCCGTGGAAGAGGTGGGAGAC
GGCTCGGGCATAGTTTATGTTGTAGAAGCAGGAGACAAGGCCCAAGCAGC
GGGGATGGAAGTGGGGGACGTGATTGTAGGATGCTCCTTCATTTTCGATG
ATTCATATTTGGTCAACGTGACGGGAAAGGGAGTGGAAAAGGTGGAATCG
CTCATTCGGTCCCGTGGGCCGGATTACGTGTGTTTGCGCGTGAAGAAGGG
ATGTGAGTACCATCTGTTGGACAAGGAGGATCTCGACGCCATGCGGCGGG
AATATGATGAGGAAGCCACCTTGGAGCCGGAGGAGAAAGAGGCACGATGG
ATTAAGTTGGCGCAGAGTATTTTTATCGATGATTTGGGCTGGAGACCTGA
GGGCGAGGAAGGAGAAGAGGAAGAGGAGTCATGGTGA

Synonyms

Publications