jgi.p|Nanoce1779_2|572138, mRNA_1456 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572138
Unique Name	mRNA_1456
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1846
Alignment location	scaffold_1:592367..594324 -

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Properties


Property Name	Value
TranscriptId	572224
Track	FilteredModels2
ProteinId	572138

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:592367..594324 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572138	gene_1456	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572138	mRNA_1456-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1456	CDS_1456	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:592367..594324-
coding sequence from alignment at scaffold_1:592367..594324-

mRNA sequence

>mRNA_1456 ID=mRNA_1456|Name=jgi.p|Nanoce1779_2|572138|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
ACAGGAGCAGAAGGGGCTTGTGTGGTTTGTTTGGCTTACATCGCCTAGGG
GGAAGAGACACATCGTCAAGCCTCGCTCCAAGCGGTGCGCCCTGACATCA
TAAGCCTGCCCCGAGGGAGCAGCATTACATTCTCAACTTAACAAGCCAAA
TGCTGGCGTCTCACGCCTCTGTGCTTCACAAGATGCTCCAGCAGCTCGGA
TGTAAGAGGGCCTTGTCGCAGCTAGCCACGTCCGCGCCGTCCCATCATCC
ACAGCAGCACCAACAGCACCAACCCTCGCACCCGAAACAGCAGCAGCAGC
AGCAGGCGAATGTTGCGGCAGGCCACCGGGTGCCCCCATTCCTCCAACAG
CAACAGGCCACACCTTTGCCTCCCTCATCTTTGAACCGAGGGGCACATGC
ACAACGACCTCGTGGCACGGTCACATCTGCCGCCTCTGCGCCTCCACCCT
CACCCTCGTCCCTCCAGGACGAGGAAGGGGCCGTCCTGACCTATGCCAAA
AAGAGATCGGAGCGGGTGTCTTTGCGCAGCCTGGCCGAAGTAGGATTGGG
GACACGCCCGAGATTGTCTAGTATGCGAGATGCCGTGCCAATGCGGGACC
CGCTGACGTCATTGAATTCTCGCTTGTGCCGTGCCTCTGACTCTCACTCG
CCGGCGGAGAAGGGGCTGTTGCGCATGGCTACTTTTTTGCACCGGGAGCT
TCCCATCCGCTTTGCACGTGGCATAACATTTATTGATAAGCTGAACGTCT
GCCGGGAGGCGCCAAGTTTAAATGTTGTTCGAGATTGTTACTTGCAGTCG
TTCCGTAACATTGTCACGAGCCCTTGCCCTATCACGGATGATGGCGAGGC
GAGCTTTGTCAATGTCCTGGAGCAGGTGGGAGACAGGCATGCGGATGAGT
TGTTGTTGGTCGCGAGGGGGTTGTACGAGTTGCGCTCGAAGCTGGGAATG
GATGTGTTGGAGCGTGGGGGAAGTTTTGAGGCGTTGCATGCGCAGTTAGA
TGAGCTACACTTGAAGCGGATTGCCTTGCGGATCCTGATAGGACATTACC
TGGCATTACACCGGCCTGCACGGCAAGACTATGTGGGCATCATTTGCACG
AAAACCCGCCTCCAAGATGTAATCGAAGTCGCGGCTTTTGACGCTAGGTG
GATATGCAAGCAACGCTTTAACGGCCGCGCTCCCCGAGTGGAAGTGATAG
GTGGCGAGAACATGGTCATGGCGTGTATCCCAGAATCTCTCTACTTTCTC
ACCATGGAGCTAATTAAAAACTCCTTGCGTGCCGTGGCAGAACGACACAA
CACAGCCTTGCTCCGCCCGAACGCCGAGGAGGATGGGGCCTTGGTAAAGG
ATGGCAAGCAAGGGGTGCCCGCCATTCAGATCGTCTTGAGCAAGGAGTAC
AGTCTGACGGATGGGCAGCAGGTAGTGATCGAGATCAGAGACGAGGGGGG
AGGAATACCACCCAAGGATCTAGATAAGGTGTTCTGTTACTTTTTTTCCA
CATCGGCGGATGCAGGGGTCCAGCAGGCGATCGTAGGTGGCGGAGGTTTG
AATAGCAGTGGGGTTAATAGCAGCAACAGTGCAGGGGGGGACAGAGGGAA
GAAGGTACCCTTGGCGGGATTGGGGTATGGACTTGGGATTGCCAAGTCGT
ATGCGCTCTATTTCGGGGGGGATTTAAAGATCGAAAACAGGCCGGGGGAA
GGCTGCTCGGTGTTCGTAACGTTGAGCCGGCTGGGAGAGTGCAAGGAGCC
CATGGTGTGAGGGAGGGAGGGAAGAAGGGAGGAAAGGCGAGATGAAGATG
TGTATGCGAAGCCGAGCTGGGGTTGGAAATGACGTGTTGGTGAGGC

protein sequence of jgi.p|Nanoce1779_2|572138

>mRNA_1456-protein ID=mRNA_1456-protein|Name=jgi.p|Nanoce1779_2|572138|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MLASHASVLHKMLQQLGCKRALSQLATSAPSHHPQQHQQHQPSHPKQQQQ
QQANVAAGHRVPPFLQQQQATPLPPSSLNRGAHAQRPRGTVTSAASAPPP
SPSSLQDEEGAVLTYAKKRSERVSLRSLAEVGLGTRPRLSSMRDAVPMRD
PLTSLNSRLCRASDSHSPAEKGLLRMATFLHRELPIRFARGITFIDKLNV
CREAPSLNVVRDCYLQSFRNIVTSPCPITDDGEASFVNVLEQVGDRHADE
LLLVARGLYELRSKLGMDVLERGGSFEALHAQLDELHLKRIALRILIGHY
LALHRPARQDYVGIICTKTRLQDVIEVAAFDARWICKQRFNGRAPRVEVI
GGENMVMACIPESLYFLTMELIKNSLRAVAERHNTALLRPNAEEDGALVK
DGKQGVPAIQIVLSKEYSLTDGQQVVIEIRDEGGGIPPKDLDKVFCYFFS
TSADAGVQQAIVGGGGLNSSGVNSSNSAGGDRGKKVPLAGLGYGLGIAKS
YALYFGGDLKIENRPGEGCSVFVTLSRLGECKEPMV*

mRNA from alignment at scaffold_1:592367..594324-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1456 ID=mRNA_1456|Name=jgi.p|Nanoce1779_2|572138|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp|location=Sequence derived from alignment at scaffold_1:592367..594324- (Nannochloropsis oceanica)
ACAGGAGCAGAAGGGGCTTGTGTGGTTTGTTTGGCTTACATCGCCTAGGG
GGAAGAGACACATCGTCAAGCCTCGCTCCAAGCGGTGCGCCCTGACATCA
TAAGCCTGCCCCGAGGGAGCAGCATTACATTCTCAACTTAACAAGCCAAA
TGCTGGCGTCTCACGCCTCTGTGCTTCACAAGATGCTCCAGCAGCTCGGA
TGTAAGAGGGCCTTGTCGCAGCTAGCCACGTCCGCGCCGTCCCATCATCC
ACAGCAGCACCAACAGCACCAACCCTCGCACCCGAAACAGCAGCAGCAGC
AGCAGGCGAATGTTGCGGCAGGCCACCGGGTGCCCCCATTCCTCCAACAG
CAACAGGCCACACCTTTGCCTCCCTCATCTTTGAACCGAGGGGCACATGC
ACAACGACCTCGTGGCACGGTCACATCTGCCGCCTCTGCGCCTCCACCCT
CACCCTCGTCCCTCCAGGACGAGGAAGGGGCCGTCCTGACCTATGCCAAA
AAGAGATCGGAGCGGGTGTCTTTGCGCAGCCTGGCCGAAGTAGGATTGGG
GACACGCCCGAGATTGTCTAGTATGCGAGATGCCGTGCCAATGCGGGACC
CGCTGACGTCATTGAATTCTCGCTTGTGCCGTGCCTCTGACTCTCACTCG
CCGGCGGAGAAGGGGCTGTTGCGCATGGCTACTTTTTTGCACCGGGAGCT
TCCCATCCGCTTTGCACGTGGCATAACATTTATTGATAAGCTGAACGTCT
GCCGGGAGGCGCCAAGTTTAAATGTTGTTCGAGATTGTTACTTGCAGTCG
TTCCGTAACATTGTCACGAGCCCTTGCCCTATCACGGATGATGGCGAGGC
GAGCTTTGTCAATGTCCTGGAGCAGGTGGGAGACAGGCATGCGGATGAGT
TGTTGTTGGTCGCGAGGGGGTTGTACGAGTTGCGCTCGAAGCTGGGAATG
GATGTGTTGGAGCGTGGGGGAAGTTTTGAGGCGTTGCATGCGCAGTTAGA
TGAGCTACACTTGAAGCGGATTGCCTTGCGGATCCTGATAGGACATTACC
TGGCATTACACCGGCCTGCACGGCAAGACTATGTGGTACGTTGGTTGAAG
GAGGATGTGAGTAGGATGCTTGAAATTCTCGTGGTTTTTGTCCTCCCGCT
CTCCTTAGTAACCCACCCTCCTCTTCCGTCCCCACTTTTTCTCACAGGGC
ATCATTTGCACGAAAACCCGCCTCCAAGATGTAATCGAAGTCGCGGCTTT
TGACGCTAGGTGGATATGCAAGCAACGCTTTAACGGCCGCGCTCCCCGAG
TGGAAGTGATAGGTGGCGAGAACATGGTCATGGCGTGTATCCCAGAATCT
CTCTACTTTCTCACCATGGAGCTAATTAAAAACTCCTTGCGTGCCGTGGC
AGAACGACACAACACAGCCTTGCTCCGCCCGAACGCCGAGGAGGATGGGG
CCTTGGTAAAGGATGGCAAGCAAGGGGTGCCCGCCATTCAGATCGTCTTG
AGCAAGGAGTACAGTCTGACGGATGGGCAGCAGGTAGTGATCGAGATCAG
AGACGAGGGGGGAGGAATACCACCCAAGGATCTAGATAAGGTGTTCTGTT
ACTTTTTTTCCACATCGGCGGATGCAGGGGTCCAGCAGGCGATCGTAGGT
GGCGGAGGTTTGAATAGCAGTGGGGTTAATAGCAGCAACAGTGCAGGGGG
GGACAGAGGGAAGAAGGTACCCTTGGCGGGATTGGGGTATGGACTTGGGA
TTGCCAAGTCGTATGCGCTCTATTTCGGGGGGGATTTAAAGATCGAAAAC
AGGCCGGGGGAAGGCTGCTCGGTGTTCGTAACGTTGAGCCGGCTGGGAGA
GTGCAAGGAGCCCATGGTGTGAGGGAGGGAGGGAAGAAGGGAGGAAAGGC
GAGATGAAGATGTGTATGCGAAGCCGAGCTGGGGTTGGAAATGACGTGTT
GGTGAGGC

Coding sequence (CDS) from alignment at scaffold_1:592367..594324-

>mRNA_1456 ID=mRNA_1456|Name=jgi.p|Nanoce1779_2|572138|organism=Nannochloropsis oceanica|type=CDS|length=3222bp|location=Sequence derived from alignment at scaffold_1:592367..594324- (Nannochloropsis oceanica)
GGCATCATTTGCACGAAAACCCGCCTCCAAGATGTAATCGAAGTCGCGGC
TTTTGACGCTAGGTGGATATGCAAGCAACGCTTTAACGGCCGCGCTCCCC
GAGTGGAAGTGATAGGTGGCGAGAACATGGTCATGGCGTGTATCCCAGAA
TCTCTCTACTTTCTCACCATGGAGCTAATTAAAAACTCCTTGCGTGCCGT
GGCAGAACGACACAACACAGCCTTGCTCCGCCCGAACGCCGAGGAGGATG
GGGCCTTGGTAAAGGATGGCAAGCAAGGGGTGCCCGCCATTCAGATCGTC
TTGAGCAAGGAGTACAGTCTGACGGATGGGCAGCAGGTAGTGATCGAGAT
CAGAGACGAGGGGGGAGGAATACCACCCAAGGATCTAGATAAGGTGTTCT
GTTACTTTTTTTCCACATCGGCGGATGCAGGGGTCCAGCAGGCGATCGTA
GGTGGCGGAGGTTTGAATAGCAGTGGGGTTAATAGCAGCAACAGTGCAGG
GGGGGACAGAGGGAAGAAGGTACCCTTGGCGGGATTGGGGTATGGACTTG
GGATTGCCAAGTCGTATGCGCTCTATTTCGGGGGGGATTTAAAGATCGAA
AACAGGCCGGGGGAAGGCTGCTCGGTGTTCGTAACGTTGAGCCGGCTGGG
AGAGTGCAAGGAGCCCATGGTGTGAATGCTGGCGTCTCACGCCTCTGTGC
TTCACAAGATGCTCCAGCAGCTCGGATGTAAGAGGGCCTTGTCGCAGCTA
GCCACGTCCGCGCCGTCCCATCATCCACAGCAGCACCAACAGCACCAACC
CTCGCACCCGAAACAGCAGCAGCAGCAGCAGGCGAATGTTGCGGCAGGCC
ACCGGGTGCCCCCATTCCTCCAACAGCAACAGGCCACACCTTTGCCTCCC
TCATCTTTGAACCGAGGGGCACATGCACAACGACCTCGTGGCACGGTCAC
ATCTGCCGCCTCTGCGCCTCCACCCTCACCCTCGTCCCTCCAGGACGAGG
AAGGGGCCGTCCTGACCTATGCCAAAAAGAGATCGGAGCGGGTGTCTTTG
CGCAGCCTGGCCGAAGTAGGATTGGGGACACGCCCGAGATTGTCTAGTAT
GCGAGATGCCGTGCCAATGCGGGACCCGCTGACGTCATTGAATTCTCGCT
TGTGCCGTGCCTCTGACTCTCACTCGCCGGCGGAGAAGGGGCTGTTGCGC
ATGGCTACTTTTTTGCACCGGGAGCTTCCCATCCGCTTTGCACGTGGCAT
AACATTTATTGATAAGCTGAACGTCTGCCGGGAGGCGCCAAGTTTAAATG
TTGTTCGAGATTGTTACTTGCAGTCGTTCCGTAACATTGTCACGAGCCCT
TGCCCTATCACGGATGATGGCGAGGCGAGCTTTGTCAATGTCCTGGAGCA
GGTGGGAGACAGGCATGCGGATGAGTTGTTGTTGGTCGCGAGGGGGTTGT
ACGAGTTGCGCTCGAAGCTGGGAATGGATGTGTTGGAGCGTGGGGGAAGT
TTTGAGGCGTTGCATGCGCAGTTAGATGAGCTACACTTGAAGCGGATTGC
CTTGCGGATCCTGATAGGACATTACCTGGCATTACACCGGCCTGCACGGC
AAGACTATGTGGGCATCATTTGCACGAAAACCCGCCTCCAAGATGTAATC
GAAGTCGCGGCTTTTGACGCTAGGTGGATATGCAAGCAACGCTTTAACGG
CCGCGCTCCCCGAGTGGAAGTGATAGGTGGCGAGAACATGGTCATGGCGT
GTATCCCAGAATCTCTCTACTTTCTCACCATGGAGCTAATTAAAAACTCC
TTGCGTGCCGTGGCAGAACGACACAACACAGCCTTGCTCCGCCCGAACGC
CGAGGAGGATGGGGCCTTGGTAAAGGATGGCAAGCAAGGGGTGCCCGCCA
TTCAGATCGTCTTGAGCAAGGAGTACAGTCTGACGGATGGGCAGCAGGTA
GTGATCGAGATCAGAGACGAGGGGGGAGGAATACCACCCAAGGATCTAGA
TAAGGTGTTCTGTTACTTTTTTTCCACATCGGCGGATGCAGGGGTCCAGC
AGGCGATCGTAGGTGGCGGAGGTTTGAATAGCAGTGGGGTTAATAGCAGC
AACAGTGCAGGGGGGGACAGAGGGAAGAAGGTACCCTTGGCGGGATTGGG
GTATGGACTTGGGATTGCCAAGTCGTATGCGCTCTATTTCGGGGGGGATT
TAAAGATCGAAAACAGGCCGGGGGAAGGCTGCTCGGTGTTCGTAACGTTG
AGCCGGCTGGGAGAGTGCAAGGAGCCCATGGTGTGAATGCTGGCGTCTCA
CGCCTCTGTGCTTCACAAGATGCTCCAGCAGCTCGGATGTAAGAGGGCCT
TGTCGCAGCTAGCCACGTCCGCGCCGTCCCATCATCCACAGCAGCACCAA
CAGCACCAACCCTCGCACCCGAAACAGCAGCAGCAGCAGCAGGCGAATGT
TGCGGCAGGCCACCGGGTGCCCCCATTCCTCCAACAGCAACAGGCCACAC
CTTTGCCTCCCTCATCTTTGAACCGAGGGGCACATGCACAACGACCTCGT
GGCACGGTCACATCTGCCGCCTCTGCGCCTCCACCCTCACCCTCGTCCCT
CCAGGACGAGGAAGGGGCCGTCCTGACCTATGCCAAAAAGAGATCGGAGC
GGGTGTCTTTGCGCAGCCTGGCCGAAGTAGGATTGGGGACACGCCCGAGA
TTGTCTAGTATGCGAGATGCCGTGCCAATGCGGGACCCGCTGACGTCATT
GAATTCTCGCTTGTGCCGTGCCTCTGACTCTCACTCGCCGGCGGAGAAGG
GGCTGTTGCGCATGGCTACTTTTTTGCACCGGGAGCTTCCCATCCGCTTT
GCACGTGGCATAACATTTATTGATAAGCTGAACGTCTGCCGGGAGGCGCC
AAGTTTAAATGTTGTTCGAGATTGTTACTTGCAGTCGTTCCGTAACATTG
TCACGAGCCCTTGCCCTATCACGGATGATGGCGAGGCGAGCTTTGTCAAT
GTCCTGGAGCAGGTGGGAGACAGGCATGCGGATGAGTTGTTGTTGGTCGC
GAGGGGGTTGTACGAGTTGCGCTCGAAGCTGGGAATGGATGTGTTGGAGC
GTGGGGGAAGTTTTGAGGCGTTGCATGCGCAGTTAGATGAGCTACACTTG
AAGCGGATTGCCTTGCGGATCCTGATAGGACATTACCTGGCATTACACCG
GCCTGCACGGCAAGACTATGTG

Synonyms

Publications