jgi.p|Nanoce1779_2|6596, mRNA_1453 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|6596
Unique Name	mRNA_1453
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1330
Alignment location	scaffold_1:582496..583825 +

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Properties


Property Name	Value
TranscriptId	6682
Track	FilteredModels2
ProteinId	6596

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:582496..583825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6596	gene_1453	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6596	mRNA_1453-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1453	CDS_1453	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:582496..583825+
coding sequence from alignment at scaffold_1:582496..583825+

mRNA sequence

>mRNA_1453 ID=mRNA_1453|Name=jgi.p|Nanoce1779_2|6596|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
GTGAGTCTGTTTTTAATGTTGTCATTTCTTTTATCCTTACTTACAGCAGG
AGCCCTTAGCGAGCGCGGAGGAGGCAGCGGCCGCAACGGCAGCATCCGGC
GCGGCGGCTGCAAGGAAAGCAGGCAAGGTCGTCAAGACGAGCGGGATGAA
GCTCTTCAGTGGAAATGCAAACACTCGACTGGCGGCAGAGATTGCGGGCC
AATTGGGCATGAATCTGGGGAAAATCACCGTATCGCGCTTTGCGGACGGG
GAGGTGAATGTGATGGTCCACGAGAATGTGCGCGGCAAGGACGTGTATAT
CGTGCAACCCACATGCTCGCCCGTGAATGAGAACCTCATGGAGCTCTTGC
TGATGGTATCCACCATGCGTCGCTCTTCTGCCCGACGGATCACGGCCGTC
ATTCCCTATTATGGCTATGCCCGCCAAGACAGGAAGATGCAGGCGCGAGT
TCCGATCTCGGCCGCTGATGTCGCCAGGCTATTGGAAGCCATGGGGGTGG
ATCGTGTGGTGGCCGTCGATTTGCACTGTGGCCAGATCCAGGGTTTCTTC
GGTCCGCGTGTGCCGGTGGATAACTTGGATGGAGGCACGGTAGGTGTCTC
TTACTTTGGAGACAAGGACTTGCATAACCCTGTGATAGTGTCTCCCGATG
CGGGGGGAGTGTATCGTGCCAAGAAGTTCCGCGAAGGCCTCGCGCAGAAG
TACGACGTGGATGCGGGCTTGGCCATGATTATCAAGCAGCGGGCAAGGGC
GAATGAGGTGGATCGGATGGATTTGGTGGGCTCGGTGGTGGACTCTGATG
TGGTGATTGTTGATGACATGATTGACACTGCGGGGACTCTCGCCAAGGCG
GCGGACGTCTTGGTCACCAATGGAGCCCGGCGTGTCTATTCGTTTGCGAG
CCATGGCTTGTTTTCTGGCCCAGCAAATGAGCGGATTGTCAAGTCCAAGC
TTGAAGAGGTGGTGGTGTTGAATACCATCCCCCTTACTCACGCCCATGAG
GCGAACGCCAAGATCGTGCAGTTGTCGGTTGCCCCGTTGATCGCCCAGGC
GATTTACAACATTCACCAAAAGAAGTCAATCTCTGCATTGTTCAAGTAAG
AGAACAGCAGGGACTGACGGAGAGAGGAAGAAAGGGCAGGTGTGGTGCTT
GATTTGTGTGTTCGTTCAAATGAGTGCGAAGCATGCATGCGTGGGTTATG
GTGAATTGGCCACTGCGAAGACGAAAGATAATGGAGGGAGAGGATGATGA
CAAATTTTGCTTGCTTGAGTTTGGCTGGCCAGACAGGGCTTTGCCCCTTT
GTGTGGGTTGGTGAGCAAAACATATAATGA

protein sequence of jgi.p|Nanoce1779_2|6596

>mRNA_1453-protein ID=mRNA_1453-protein|Name=jgi.p|Nanoce1779_2|6596|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MKLFSGNANTRLAAEIAGQLGMNLGKITVSRFADGEVNVMVHENVRGKDV
YIVQPTCSPVNENLMELLLMVSTMRRSSARRITAVIPYYGYARQDRKMQA
RVPISAADVARLLEAMGVDRVVAVDLHCGQIQGFFGPRVPVDNLDGGTVG
VSYFGDKDLHNPVIVSPDAGGVYRAKKFREGLAQKYDVDAGLAMIIKQRA
RANEVDRMDLVGSVVDSDVVIVDDMIDTAGTLAKAADVLVTNGARRVYSF
ASHGLFSGPANERIVKSKLEEVVVLNTIPLTHAHEANAKIVQLSVAPLIA
QAIYNIHQKKSISALFK*

mRNA from alignment at scaffold_1:582496..583825+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1453 ID=mRNA_1453|Name=jgi.p|Nanoce1779_2|6596|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_1:582496..583825+ (Nannochloropsis oceanica)
GTGAGTCTGTTTTTAATGTTGTCATTTCTTTTATCCTTACTTACAGCAGG
AGCCCTTAGCGAGCGCGGAGGAGGCAGCGGCCGCAACGGCAGCATCCGGC
GCGGCGGCTGCAAGGAAAGCAGGCAAGGTCGTCAAGACGAGCGGGATGAA
GCTCTTCAGTGGAAATGCAAACACTCGACTGGCGGCAGAGATTGCGGGCC
AATTGGGCATGAATCTGGGGAAAATCACCGTATCGCGCTTTGCGGACGGG
GAGGTGAATGTGATGGTCCACGAGAATGTGCGCGGCAAGGACGTGTATAT
CGTGCAACCCACATGCTCGCCCGTGAATGAGAACCTCATGGAGCTCTTGC
TGATGGTATCCACCATGCGTCGCTCTTCTGCCCGACGGATCACGGCCGTC
ATTCCCTATTATGGCTATGCCCGCCAAGACAGGAAGATGCAGGCGCGAGT
TCCGATCTCGGCCGCTGATGTCGCCAGGCTATTGGAAGCCATGGGGGTGG
ATCGTGTGGTGGCCGTCGATTTGCACTGTGGCCAGATCCAGGGTTTCTTC
GGTCCGCGTGTGCCGGTGGATAACTTGGATGGAGGCACGGTAGGTGTCTC
TTACTTTGGAGACAAGGACTTGCATAACCCTGTGATAGTGTCTCCCGATG
CGGGGGGAGTGTATCGTGCCAAGAAGTTCCGCGAAGGCCTCGCGCAGAAG
TACGACGTGGATGCGGGCTTGGCCATGATTATCAAGCAGCGGGCAAGGGC
GAATGAGGTGGATCGGATGGATTTGGTGGGCTCGGTGGTGGACTCTGATG
TGGTGATTGTTGATGACATGATTGACACTGCGGGGACTCTCGCCAAGGCG
GCGGACGTCTTGGTCACCAATGGAGCCCGGCGTGTCTATTCGTTTGCGAG
CCATGGCTTGTTTTCTGGCCCAGCAAATGAGCGGATTGTCAAGTCCAAGC
TTGAAGAGGTGGTGGTGTTGAATACCATCCCCCTTACTCACGCCCATGAG
GCGAACGCCAAGATCGTGCAGTTGTCGGTTGCCCCGTTGATCGCCCAGGC
GATTTACAACATTCACCAAAAGAAGTCAATCTCTGCATTGTTCAAGTAAG
AGAACAGCAGGGACTGACGGAGAGAGGAAGAAAGGGCAGGTGTGGTGCTT
GATTTGTGTGTTCGTTCAAATGAGTGCGAAGCATGCATGCGTGGGTTATG
GTGAATTGGCCACTGCGAAGACGAAAGATAATGGAGGGAGAGGATGATGA
CAAATTTTGCTTGCTTGAGTTTGGCTGGCCAGACAGGGCTTTGCCCCTTT
GTGTGGGTTGGTGAGCAAAACATATAATGA

Coding sequence (CDS) from alignment at scaffold_1:582496..583825+

>mRNA_1453 ID=mRNA_1453|Name=jgi.p|Nanoce1779_2|6596|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_1:582496..583825+ (Nannochloropsis oceanica)
ATGAAGCTCTTCAGTGGAAATGCAAACACTCGACTGGCGGCAGAGATTGC
GGGCCAATTGGGCATGAATCTGGGGAAAATCACCGTATCGCGCTTTGCGG
ACGGGGAGGTGAATGTGATGGTCCACGAGAATGTGCGCGGCAAGGACGTG
TATATCGTGCAACCCACATGCTCGCCCGTGAATGAGAACCTCATGGAGCT
CTTGCTGATGGTATCCACCATGCGTCGCTCTTCTGCCCGACGGATCACGG
CCGTCATTCCCTATTATGGCTATGCCCGCCAAGACAGGAAGATGCAGGCG
CGAGTTCCGATCTCGGCCGCTGATGTCGCCAGGCTATTGGAAGCCATGGG
GGTGGATCGTGTGGTGGCCGTCGATTTGCACTGTGGCCAGATCCAGGGTT
TCTTCGGTCCGCGTGTGCCGGTGGATAACTTGGATGGAGGCACGGTAGGT
GTCTCTTACTTTGGAGACAAGGACTTGCATAACCCTGTGATAGTGTCTCC
CGATGCGGGGGGAGTGTATCGTGCCAAGAAGTTCCGCGAAGGCCTCGCGC
AGAAGTACGACGTGGATGCGGGCTTGGCCATGATTATCAAGCAGCGGGCA
AGGGCGAATGAGGTGGATCGGATGGATTTGGTGGGCTCGGTGGTGGACTC
TGATGTGGTGATTGTTGATGACATGATTGACACTGCGGGGACTCTCGCCA
AGGCGGCGGACGTCTTGGTCACCAATGGAGCCCGGCGTGTCTATTCGTTT
GCGAGCCATGGCTTGTTTTCTGGCCCAGCAAATGAGCGGATTGTCAAGTC
CAAGCTTGAAGAGGTGGTGGTGTTGAATACCATCCCCCTTACTCACGCCC
ATGAGGCGAACGCCAAGATCGTGCAGTTGTCGGTTGCCCCGTTGATCGCC
CAGGCGATTTACAACATTCACCAAAAGAAGTCAATCTCTGCATTGTTCAA
GTAA

Synonyms

Publications