jgi.p|Nanoce1779_2|6342, mRNA_1451 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|6342
Unique NamemRNA_1451
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1506
Alignment locationscaffold_1:578316..581218 +

Link to JBrowse

Properties
Property NameValue
TranscriptId6428
TrackFilteredModels2
ProteinId6342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:578316..581218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6342gene_1451Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6342mRNA_1451-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1451CDS_1451Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1451 ID=mRNA_1451|Name=jgi.p|Nanoce1779_2|6342|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
ACCTTGAGCTCCTGGTCGAAGTCCAGCGCCACGTAGGTCAGCTTCTCCTT
GATGTCACGCACAATCTCCCGCTCCGCCGTGGTAGTGAAGGAGTATCCCC
GCTCCGTAAGAATCTTCATCAAGTACTCCGTCAGGTCCCGGCCCGCCAGG
TCCAAGCGCACGATGGCATGCGGCAACGCGTACCCCTCGTAGATGGGCAC
CGTGTGGCTCACGCCGTCCCCAGAATCTAGCACACACCCCGTGGTCCGCC
CCGAGGCGTACAGCGAGAGCACCGCCTGGATGTTCACGTACATCGCCGGC
ACGTTGAACGTCTCAAACATAATCTGGGTCATACGCTCCCGGTTTGCCTT
GGGGTTCATCGGCGCCTCCGTCAGCAGCACTGGGTGCTCCTCGGGGGCCA
CACGCAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATATCGTCC
CAGTTCGTCACGGATATGGAGAAGATCTGGCACCACACCTTCTACAACGA
GCTGCGTGTGGCCCCCGAGGAGCACCCAGTGCTGCTGACGGAGGCGCCGA
TGAACCCCAAGGCAAACCGGGAGCGTATGACCCAGATTATGTTTGAGACG
TTCAACGTGCCGGCGATGTACGTGAACATCCAGGCGGTGCTCTCGCTGTA
CGCCTCGGGGCGGACCACGGGGTGTGTGCTAGATTCTGGGGACGGCGTGA
GCCACACGGTGCCCATCTACGAGGGGTACGCGTTGCCGCATGCCATCGTG
CGCTTGGACCTGGCGGGCCGGGACCTGACGGAGTACTTGATGAAGATTCT
TACGGAGCGGGGATACTCCTTCACTACCACGGCGGAGCGGGAGATTGTGC
GTGACATCAAGGAGAAGCTGACCTACGTGGCGCTGGACTTCGACCAGGAG
CTCAAGGTGGCGGAGGAGTCTTCCAGCTTGGAAAAGAGCTACGAGCTACC
GGATGGAAACGTGATCGTGATTGGCTCGGAGCGCTTCCGGGCGCCTGAGG
TGCTCTTCCAGCCGTCCTTCATCGGGAAGGAGGCCAGCGGCGTGCATGAC
TGCACGTTCCAGACCATTATGAAGTGCGACGTGGACATCCGCAAGGATCT
TTACTCGAACATCGTCTTGTCTGGTGGGACAACCATGTTCCCAGGCATCG
GGGAGCGCATGACCAAGGAGATCTCGGCCCTGGCGCCCGCCACCATGAAA
GTCAAGGTGGTGGCCCCGCCCGAGCGCAAGTACAGCGTATGGATCGGCGG
CTCCATCCTCTCCTCCCTCTCCACCTTCCAGAGCATGTGGATCTCTAAGG
CCGAGTACGACGAGTCGGGGCCCTCTATCGTCCACCGCAAGTGCTTTTAA
TTTTTGGATCAAGGAAGGAGAGGGGTGTTGATTCTTTTCCTTTTTCGTGT
GCCAGTTCGCGATAGCTGAAAGTGTTTTGTTTGGTTGTGTAGAGCATCAC
GAAGCTAACAAGAAAAAGGTTGCATGGAAGGAAGAAAAGTAGGGGAGGGA
AGACAG
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protein sequence of jgi.p|Nanoce1779_2|6342

>mRNA_1451-protein ID=mRNA_1451-protein|Name=jgi.p|Nanoce1779_2|6342|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPA
MYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLA
GRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAE
ESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQT
IMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVA
PPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF*
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mRNA from alignment at scaffold_1:578316..581218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1451 ID=mRNA_1451|Name=jgi.p|Nanoce1779_2|6342|organism=Nannochloropsis oceanica|type=mRNA|length=2903bp|location=Sequence derived from alignment at scaffold_1:578316..581218+ (Nannochloropsis oceanica)
ACCTTGAGCTCCTGGTCGAAGTCCAGCGCCACGTAGGTCAGCTTCTCCTT
GATGTCACGCACAATCTCCCGCTCCGCCGTGGTAGTGAAGGAGTATCCCC
GCTCCGTAAGAATCTTCATCAAGTACTCCGTCAGGTCCCGGCCCGCCAGG
TCCAAGCGCACGATGGCATGCGGCAACGCGTACCCCTCGTAGATGGGCAC
CGTGTGGCTCACGCCGTCCCCAGAATCTAGCACACACCCCGTGGTCCGCC
CCGAGGCGTACAGCGAGAGCACCGCCTGGATGTTCACGTACATCGCCGGC
ACGTTGAACGTCTCAAACATAATCTGGGTCATACGCTCCCGGTTTGCCTT
GGGGTTCATCGGCGCCTCCGTCAGCAGCACTGGGTGCTCCTCGGGGGCCA
CACGCAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATATCGTCC
CAGTTCGTCACGATACCGTGCTCGATCGGGTATTTGAGCGTCAACACGCC
GCGCTTCGACTGCGCCTCGTCCCCGACGTACGCATCCTTCTGGTCCATCC
CAACCATGATGCCCGGGTGCTTAGGCCGCCCCACGATGGACGGGAACACT
GCCCGTGGCGCGTCGTCGCCCGCAAACCCAGCCTTGCACATGCCAGAGCC
ATTGTCAATGACCAGCGCTTGCACGTCCTCTTCCGCCATTGTCGATGATG
TGGGTGGTCGTTGCTTACGGTAACAGGGTCTTGTGATGAGGCCCAACTGT
GTTTGTCAAAGGAGGGAAAGGGAAGATGTCAGGAGGATGTGAGATCATGC
AAGATTCCGGACGCGGTACGCGGACAGTAGGGGTCGCAGCCATTGCCAGT
CATCGCACATGCGATGCCATCAGGCTCCGAATGTTAACAGGGCGCGTTCA
TGGTACGCTTTCCCCGGCGCCCAAGGCCCCGCGAACGAAGCCACCTTTTA
CAGCATTCTACAGCATACAGCGCCTTCAGTATCCCGGGACAAGCGGGCGT
CGGGTACCTCCAAGAGTGGTCCTCAGGTTCGGGGATGGTCGTTTGCAAAG
TCGGGAGACGTGAGAGAGGCAAGCAAAGGTGTGATAGGAGGAGTTTCACC
CTTCGAAGTCGTGGTTCGTCATCATCATCGCCAAAAACCCACGCGTTAAC
TGACGACAGCCCTTCGCCCGTCACGCCCGACCACCCGAAACGAGGTGCCA
GCCACATCCACACAACATGGGGGTCCGTGTCTTTTGAAAAATTTTGAGCA
AGCCTTCGCATGACGTGTGATTTACAATTAATGCAAGACAAACAAGCTGC
CGTTTCTCCCTCCAGAATAGACTGCGACCGAGATTTAACTGTATGGGCGT
TTCTCCCTAGTAGTCATGGAGAGTTCGTCATCCTCGCTCTTGTCATGCAC
ATCACCACCGTGCTTGAGCACCTGTTAGCCTCCTTGTAGCATCGCATGTG
CGATGACTGGCAATGGCTGCGACCCCTACTGTCCGCGTACCGCGTCCGGA
ATCTTGCATGATCTCACATCCTCCTGACATCTTCCCTTTCCCTCCTTTGA
CAAACACAGTTGGGCCTCATCACAAGACCCTGTTACCGTAAGCAACGACC
ACCCACATCATCGACAATGGCGGAAGAGGACGTGCAAGCGCTGGTCATTG
ACAATGGCTCTGGCATGTGCAAGGCTGGGTTTGCGGGCGACGACGCGCCA
CGGGCAGTGTTCCCGTCCATCGTGGGGCGGCCTAAGCACCCGGGCATCAT
GGTTGGGATGGACCAGAAGGACGCGTATGTCGGGGACGAGGCGCAGTCGA
AGCGCGGCGTGTTGACGCTCAAATACCCGATCGAGCACGGTATCGTGACG
AACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCT
GCGTGTGGCCCCCGAGGAGCACCCAGTGCTGCTGACGGAGGCGCCGATGA
ACCCCAAGGCAAACCGGGAGCGTATGACCCAGATTATGTTTGAGACGTTC
AACGTGCCGGCGATGTACGTGAACATCCAGGCGGTGCTCTCGCTGTACGC
CTCGGGGCGGACCACGGGGTGTGTGCTAGATTCTGGGGACGGCGTGAGCC
ACACGGTGCCCATCTACGAGGGGTACGCGTTGCCGCATGCCATCGTGCGC
TTGGACCTGGCGGGCCGGGACCTGACGGAGTACTTGATGAAGATTCTTAC
GGAGCGGGGATACTCCTTCACTACCACGGCGGAGCGGGAGATTGTGCGTG
ACATCAAGGAGAAGCTGACCTACGTGGCGCTGGACTTCGACCAGGAGCTC
AAGGTGGCGGAGGAGTCTTCCAGCTTGGAAAAGAGCTACGAGCTACCGGA
TGGAAACGTGATCGTGATTGGCTCGGAGCGCTTCCGGGCGCCTGAGGTGC
TCTTCCAGCCGTCCTTCATCGGGAAGGAGGCCAGCGGCGTGCATGACTGC
ACGTTCCAGACCATTATGAAGTGCGACGTGGACATCCGCAAGGATCTTTA
CTCGAACATCGTCTTGTCTGGTGGGACAACCATGTTCCCAGGCATCGGGG
AGCGCATGACCAAGGAGATCTCGGCCCTGGCGCCCGCCACCATGAAAGTC
AAGGTGGTGGCCCCGCCCGAGCGCAAGTACAGCGTATGGATCGGCGGCTC
CATCCTCTCCTCCCTCTCCACCTTCCAGAGCATGTGGATCTCTAAGGCCG
AGTACGACGAGTCGGGGCCCTCTATCGTCCACCGCAAGTGCTTTTAATTT
TTGGATCAAGGAAGGAGAGGGGTGTTGATTCTTTTCCTTTTTCGTGTGCC
AGTTCGCGATAGCTGAAAGTGTTTTGTTTGGTTGTGTAGAGCATCACGAA
GCTAACAAGAAAAAGGTTGCATGGAAGGAAGAAAAGTAGGGGAGGGAAGA
CAG
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Coding sequence (CDS) from alignment at scaffold_1:578316..581218+

>mRNA_1451 ID=mRNA_1451|Name=jgi.p|Nanoce1779_2|6342|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_1:578316..581218+ (Nannochloropsis oceanica)
ATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCC
CGAGGAGCACCCAGTGCTGCTGACGGAGGCGCCGATGAACCCCAAGGCAA
ACCGGGAGCGTATGACCCAGATTATGTTTGAGACGTTCAACGTGCCGGCG
ATGTACGTGAACATCCAGGCGGTGCTCTCGCTGTACGCCTCGGGGCGGAC
CACGGGGTGTGTGCTAGATTCTGGGGACGGCGTGAGCCACACGGTGCCCA
TCTACGAGGGGTACGCGTTGCCGCATGCCATCGTGCGCTTGGACCTGGCG
GGCCGGGACCTGACGGAGTACTTGATGAAGATTCTTACGGAGCGGGGATA
CTCCTTCACTACCACGGCGGAGCGGGAGATTGTGCGTGACATCAAGGAGA
AGCTGACCTACGTGGCGCTGGACTTCGACCAGGAGCTCAAGGTGGCGGAG
GAGTCTTCCAGCTTGGAAAAGAGCTACGAGCTACCGGATGGAAACGTGAT
CGTGATTGGCTCGGAGCGCTTCCGGGCGCCTGAGGTGCTCTTCCAGCCGT
CCTTCATCGGGAAGGAGGCCAGCGGCGTGCATGACTGCACGTTCCAGACC
ATTATGAAGTGCGACGTGGACATCCGCAAGGATCTTTACTCGAACATCGT
CTTGTCTGGTGGGACAACCATGTTCCCAGGCATCGGGGAGCGCATGACCA
AGGAGATCTCGGCCCTGGCGCCCGCCACCATGAAAGTCAAGGTGGTGGCC
CCGCCCGAGCGCAAGTACAGCGTATGGATCGGCGGCTCCATCCTCTCCTC
CCTCTCCACCTTCCAGAGCATGTGGATCTCTAAGGCCGAGTACGACGAGT
CGGGGCCCTCTATCGTCCACCGCAAGTGCTTTTAA
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Synonyms
Publications