jgi.p|Nanoce1779_2|6408, mRNA_1449 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|6408
Unique NamemRNA_1449
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1602
Alignment locationscaffold_1:577730..580728 -

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Properties
Property NameValue
TranscriptId6494
TrackFilteredModels2
ProteinId6408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:577730..580728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6408gene_1449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6408mRNA_1449-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1449CDS_1449Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1449 ID=mRNA_1449|Name=jgi.p|Nanoce1779_2|6408|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp
GACGGCTGGAAGAGCACCTCAGGCGCCCGGAAGCGCTCCGAGCCAATCAC
GATCACGTTTCCATCCGGTAGCTCGTAGCTCTTTTCCAAGCTGGAAGACT
CCTCCGCCACCTTGAGCTCCTGGTCGAAGTCCAGCGCCACGTAGGTCAGC
TTCTCCTTGATGTCACGCACAATCTCCCGCTCCGCCGTGGTAGTGAAGGA
GTATCCCCGCTCCGTAAGAATCTTCATCAAGTACTCCGTCAGGTCCCGGC
CCGCCAGGTCCAAGCGCACGATGGCATGCGGCAACGCGTACCCCTCGTAG
ATGGGCACCGTGTGGCTCACGCCGTCCCCAGAATCTAGCACACACCCCGT
GGTCCGCCCCGAGGCGTACAGCGAGAGCACCGCCTGGATGTTCACGTACA
TCGCCGGCACGTTGAACGTCTCAAACATAATCTGGGTCATACGCTCCCGG
TTTGCCTTGGGGTTCATCGGCGCCTCCGTCAGCAGCACTGGGTGCTCCTC
GGGGGCCACACGCAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCA
TATCGTCCCAGTTCGTCACGGATATGGAGAAGATCTGGCACCACACCTTC
TACAACGAGCTGCGTGTGGCCCCCGAGGAGCACCCAGTGCTGCTGACGGA
GGCGCCGATGAACCCCAAGGCAAACCGGGAGCGTATGACCCAGATTATGT
TTGAGACGTTCAACGTGCCGGCGATGTACGTGAACATCCAGGCGGTGCTC
TCGCTGTACGCCTCGGGGCGGACCACGGGGTGTGTGCTAGATTCTGGGGA
CGGCGTGAGCCACACGGTGCCCATCTACGAGGGGTACGCGTTGCCGCATG
CCATCGTGCGCTTGGACCTGGCGGGCCGGGACCTGACGGAGTACTTGATG
AAGATTCTTACGGAGCGGGGATACTCCTTCACTACCACGGCGGAGCGGGA
GATTGTGCGTGACATCAAGGAGAAGCTGACCTACGTGGCGCTGGACTTCG
ACCAGGAGCTCAAGGTGGCGGAGGAGTCTTCCAGCTTGGAAAAGAGCTAC
GAGCTACCGGATGGAAACGTGATCGTGATTGGCTCGGAGCGCTTCCGGGC
GCCTGAGGTGCTCTTCCAGCCGTCCTTCATCGGGAAGGAGGCCAGCGGCG
TGCATGACTGCACGTTCCAGACCATTATGAAGTGCGACGTGGACATCCGC
AAGGATCTTTACTCGAACATCGTCTTGTCTGGTGGGACAACCATGTTCCC
AGGCATCGGGGAGCGCATGACCAAGGAGATCTCGGCCCTGGCGCCCGCCA
CCATGAAAGTCAAGGTGGTGGCCCCGCCCGAGCGCAAGTACAGCGTATGG
ATCGGCGGCTCCATCCTCTCCTCCCTCTCCACCTTCCAGAGCATGTGGAT
CTCTAAGGCCGAGTACGACGAGTCGGGGCCCTCTATCGTCCACCGCAAGT
GCTTTTAATTTTTGGATCAAGGAAGGAGAGGGGTGTTGATTCTTTTCCTT
TTTCGTGTGCCAGTTCGCGATAGCTGAAAGTGTTTTGTTTGGTTGTGTAG
AGCATCACGAAGCTAACAAGAAAAAGGTTGCATGGAAGGAAGAAAAGTAG
GG
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protein sequence of jgi.p|Nanoce1779_2|6408

>mRNA_1449-protein ID=mRNA_1449-protein|Name=jgi.p|Nanoce1779_2|6408|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPA
MYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLA
GRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAE
ESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQT
IMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVA
PPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF*
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mRNA from alignment at scaffold_1:577730..580728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1449 ID=mRNA_1449|Name=jgi.p|Nanoce1779_2|6408|organism=Nannochloropsis oceanica|type=mRNA|length=2999bp|location=Sequence derived from alignment at scaffold_1:577730..580728- (Nannochloropsis oceanica)
GACGGCTGGAAGAGCACCTCAGGCGCCCGGAAGCGCTCCGAGCCAATCAC
GATCACGTTTCCATCCGGTAGCTCGTAGCTCTTTTCCAAGCTGGAAGACT
CCTCCGCCACCTTGAGCTCCTGGTCGAAGTCCAGCGCCACGTAGGTCAGC
TTCTCCTTGATGTCACGCACAATCTCCCGCTCCGCCGTGGTAGTGAAGGA
GTATCCCCGCTCCGTAAGAATCTTCATCAAGTACTCCGTCAGGTCCCGGC
CCGCCAGGTCCAAGCGCACGATGGCATGCGGCAACGCGTACCCCTCGTAG
ATGGGCACCGTGTGGCTCACGCCGTCCCCAGAATCTAGCACACACCCCGT
GGTCCGCCCCGAGGCGTACAGCGAGAGCACCGCCTGGATGTTCACGTACA
TCGCCGGCACGTTGAACGTCTCAAACATAATCTGGGTCATACGCTCCCGG
TTTGCCTTGGGGTTCATCGGCGCCTCCGTCAGCAGCACTGGGTGCTCCTC
GGGGGCCACACGCAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCA
TATCGTCCCAGTTCGTCACGATACCGTGCTCGATCGGGTATTTGAGCGTC
AACACGCCGCGCTTCGACTGCGCCTCGTCCCCGACATACGCGTCCTTCTG
GTCCATCCCAACCATGATGCCCGGGTGCTTAGGCCGCCCCACGATGGACG
GGAACACTGCCCGTGGCGCGTCGTCGCCCGCAAACCCAGCCTTGCACATG
CCAGAGCCATTGTCAATGACCAGCGCTTGCACGTCCTCTTCCGCCATTGT
CGATGATGTGGGTGGTCGTTGCTTACGGTAACAGGGTCTTGTGATGAGGC
CCAACTGTGTTTGTCAAAGGAGGGAAAGGGAAGATGTCAGGAGGATGTGA
GATCATGCAAGATTCCGGACGCGGTACGCGGACAGTAGGGGTCGCAGCCA
TTGCCAGTCATCGCACATGCGATGCTACAAGGAGGCTAACAGGTGCTCAA
GCACGGTGGTGATGTGCATGACAAGAGCGAGGATGACGAACTCTCCATGA
CTACTAGGGAGAAACGCCCATACAGTTAAATCTCGGTCGCAGTCTATTCT
GGAGGGAGAAACGGCAGCTTGTTTGTCTTGCATTAATTGTAAATCACACG
TCATGCGAAGGCTTGCTCAAAATTTTTCAAAAGACACGGACCCCCATGTT
GTGTGGATGTGGCTGGCACCTCGTTTCGGGTGGTCGGGCGTGACGGGCGA
AGGGCTGTCGTCAGTTAACGCGTGGGTTTTTGGCGATGATGATGACGAAC
CACGACTTCGAAGGGTGAAACTCCTCCTATCACACCTTTGCTTGCCTCTC
TCACGTCTCCCGACTTTGCAAACGACCATCCCCGAACCTGAGGACCACTC
TTGGAGGTACCCGACGCCCGCTTGTCCCGGGATACTGAAGGCGCTGTATG
CTGTAGAATGCTGTAAAAGGTGGCTTCGTTCGCGGGGCCTTGGGCGCCGG
GGAAAGCGTACCATGAACGCGCCCTGTTAACATTCGGAGCCTGATGGCAT
CGCATGTGCGATGACTGGCAATGGCTGCGACCCCTACTGTCCGCGTACCG
CGTCCGGAATCTTGCATGATCTCACATCCTCCTGACATCTTCCCTTTCCC
TCCTTTGACAAACACAGTTGGGCCTCATCACAAGACCCTGTTACCGTAAG
CAACGACCACCCACATCATCGACAATGGCGGAAGAGGACGTGCAAGCGCT
GGTCATTGACAATGGCTCTGGCATGTGCAAGGCTGGGTTTGCGGGCGACG
ACGCGCCACGGGCAGTGTTCCCGTCCATCGTGGGGCGGCCTAAGCACCCG
GGCATCATGGTTGGGATGGACCAGAAGGATGCGTACGTCGGGGACGAGGC
GCAGTCGAAGCGCGGCGTGTTGACGCTCAAATACCCGATCGAGCACGGTA
TCGTGACGAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTAC
AACGAGCTGCGTGTGGCCCCCGAGGAGCACCCAGTGCTGCTGACGGAGGC
GCCGATGAACCCCAAGGCAAACCGGGAGCGTATGACCCAGATTATGTTTG
AGACGTTCAACGTGCCGGCGATGTACGTGAACATCCAGGCGGTGCTCTCG
CTGTACGCCTCGGGGCGGACCACGGGGTGTGTGCTAGATTCTGGGGACGG
CGTGAGCCACACGGTGCCCATCTACGAGGGGTACGCGTTGCCGCATGCCA
TCGTGCGCTTGGACCTGGCGGGCCGGGACCTGACGGAGTACTTGATGAAG
ATTCTTACGGAGCGGGGATACTCCTTCACTACCACGGCGGAGCGGGAGAT
TGTGCGTGACATCAAGGAGAAGCTGACCTACGTGGCGCTGGACTTCGACC
AGGAGCTCAAGGTGGCGGAGGAGTCTTCCAGCTTGGAAAAGAGCTACGAG
CTACCGGATGGAAACGTGATCGTGATTGGCTCGGAGCGCTTCCGGGCGCC
TGAGGTGCTCTTCCAGCCGTCCTTCATCGGGAAGGAGGCCAGCGGCGTGC
ATGACTGCACGTTCCAGACCATTATGAAGTGCGACGTGGACATCCGCAAG
GATCTTTACTCGAACATCGTCTTGTCTGGTGGGACAACCATGTTCCCAGG
CATCGGGGAGCGCATGACCAAGGAGATCTCGGCCCTGGCGCCCGCCACCA
TGAAAGTCAAGGTGGTGGCCCCGCCCGAGCGCAAGTACAGCGTATGGATC
GGCGGCTCCATCCTCTCCTCCCTCTCCACCTTCCAGAGCATGTGGATCTC
TAAGGCCGAGTACGACGAGTCGGGGCCCTCTATCGTCCACCGCAAGTGCT
TTTAATTTTTGGATCAAGGAAGGAGAGGGGTGTTGATTCTTTTCCTTTTT
CGTGTGCCAGTTCGCGATAGCTGAAAGTGTTTTGTTTGGTTGTGTAGAGC
ATCACGAAGCTAACAAGAAAAAGGTTGCATGGAAGGAAGAAAAGTAGGG
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Coding sequence (CDS) from alignment at scaffold_1:577730..580728-

>mRNA_1449 ID=mRNA_1449|Name=jgi.p|Nanoce1779_2|6408|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_1:577730..580728- (Nannochloropsis oceanica)
ATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCC
CGAGGAGCACCCAGTGCTGCTGACGGAGGCGCCGATGAACCCCAAGGCAA
ACCGGGAGCGTATGACCCAGATTATGTTTGAGACGTTCAACGTGCCGGCG
ATGTACGTGAACATCCAGGCGGTGCTCTCGCTGTACGCCTCGGGGCGGAC
CACGGGGTGTGTGCTAGATTCTGGGGACGGCGTGAGCCACACGGTGCCCA
TCTACGAGGGGTACGCGTTGCCGCATGCCATCGTGCGCTTGGACCTGGCG
GGCCGGGACCTGACGGAGTACTTGATGAAGATTCTTACGGAGCGGGGATA
CTCCTTCACTACCACGGCGGAGCGGGAGATTGTGCGTGACATCAAGGAGA
AGCTGACCTACGTGGCGCTGGACTTCGACCAGGAGCTCAAGGTGGCGGAG
GAGTCTTCCAGCTTGGAAAAGAGCTACGAGCTACCGGATGGAAACGTGAT
CGTGATTGGCTCGGAGCGCTTCCGGGCGCCTGAGGTGCTCTTCCAGCCGT
CCTTCATCGGGAAGGAGGCCAGCGGCGTGCATGACTGCACGTTCCAGACC
ATTATGAAGTGCGACGTGGACATCCGCAAGGATCTTTACTCGAACATCGT
CTTGTCTGGTGGGACAACCATGTTCCCAGGCATCGGGGAGCGCATGACCA
AGGAGATCTCGGCCCTGGCGCCCGCCACCATGAAAGTCAAGGTGGTGGCC
CCGCCCGAGCGCAAGTACAGCGTATGGATCGGCGGCTCCATCCTCTCCTC
CCTCTCCACCTTCCAGAGCATGTGGATCTCTAAGGCCGAGTACGACGAGT
CGGGGCCCTCTATCGTCCACCGCAAGTGCTTTTAA
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Synonyms
Publications