jgi.p|Nanoce1779_2|572113, mRNA_1448 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572113
Unique Name	mRNA_1448
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1636
Alignment location	scaffold_1:575828..577463 +

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Properties


Property Name	Value
TranscriptId	572199
Track	FilteredModels2
ProteinId	572113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:575828..577463 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572113	gene_1448	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572113	mRNA_1448-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1448	CDS_1448	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:575828..577463+
coding sequence from alignment at scaffold_1:575828..577463+

mRNA sequence

>mRNA_1448 ID=mRNA_1448|Name=jgi.p|Nanoce1779_2|572113|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
ACAGGAGCAAAGACAGGAGCAGAAGCAGTAGAGCTAGCCGCAACAGCATT
AGCATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTC
CAGATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGC
AGCAAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCC
ACAGCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGAT
GATGGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCG
TGGTGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATG
GCCACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGA
TGATAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCT
ACAAAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTG
GCTCTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCC
AGGCAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGG
CCAAGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAA
AGCGGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCC
GAAGGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCG
TGCTTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTC
GGGGGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAG
GCCTGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGG
GGAGCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTG
GCTGAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTT
CAGCGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGC
AGCAGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAG
GTACTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTT
GAAGGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGT
TGAACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGAT
ATCATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAG
GTGGTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAG
AAGACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAG
TTGCTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAA
GCTAAGTAAACGACGGTAAGGCGATGGTAAGGAGGGGAGGGAATGAAGGT
GGGGTTAGGAAATATGAAATGATATGCGGTGAAGATCGTGTAGTGTCTGG
TTAAAGTTATGGGATGCATTTTCAGGATTGAGTAAATGAGAAAGGAGCGC
GAGAATGAGTAAGGGAAAGACACCAGGGTGCGCGAG

protein sequence of jgi.p|Nanoce1779_2|572113

>mRNA_1448-protein ID=mRNA_1448-protein|Name=jgi.p|Nanoce1779_2|572113|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MASSTRLSAFRALFASRSLPSLLPLALLLMLLQQDTLAFLHPKAFAFSST
AAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMA
TMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVA
LISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQS
GGGGLQLNIFAKGVNPKEAVEAIRRESGGSRIVLVQHARLFGAANPFTVG
GKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLA
EAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKV
LAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADI
IWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEEL
LQRFSAAINRLVYSRKLSKRR*

mRNA from alignment at scaffold_1:575828..577463+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1448 ID=mRNA_1448|Name=jgi.p|Nanoce1779_2|572113|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp|location=Sequence derived from alignment at scaffold_1:575828..577463+ (Nannochloropsis oceanica)
ACAGGAGCAAAGACAGGAGCAGAAGCAGTAGAGCTAGCCGCAACAGCATT
AGCATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTC
CAGATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGC
AGCAAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCC
ACAGCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGAT
GATGGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCG
TGGTGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATG
GCCACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGA
TGATAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCT
ACAAAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTG
GCTCTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCC
AGGCAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGG
CCAAGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAA
AGCGGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCC
GAAGGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCG
TGCTTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTC
GGGGGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAG
GCCTGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGG
GGAGCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTG
GCTGAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTT
CAGCGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGC
AGCAGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAG
GTACTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTT
GAAGGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGT
TGAACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGAT
ATCATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAG
GTGGTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAG
AAGACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAG
TTGCTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAA
GCTAAGTAAACGACGGTAAGGCGATGGTAAGGAGGGGAGGGAATGAAGGT
GGGGTTAGGAAATATGAAATGATATGCGGTGAAGATCGTGTAGTGTCTGG
TTAAAGTTATGGGATGCATTTTCAGGATTGAGTAAATGAGAAAGGAGCGC
GAGAATGAGTAAGGGAAAGACACCAGGGTGCGCGAG

Coding sequence (CDS) from alignment at scaffold_1:575828..577463+

>mRNA_1448 ID=mRNA_1448|Name=jgi.p|Nanoce1779_2|572113|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_1:575828..577463+ (Nannochloropsis oceanica)
ATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTCCAG
ATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGCAGC
AAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCCACA
GCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGATGAT
GGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCGTGG
TGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATGGCC
ACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGATGA
TAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCTACA
AAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTGGCT
CTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCCAGG
CAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGGCCA
AGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAAAGC
GGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCCGAA
GGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCGTGC
TTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTCGGG
GGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAGGCC
TGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGGGGA
GCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTGGCT
GAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTTCAG
CGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGCAGC
AGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAGGTA
CTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTTGAA
GGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGTTGA
ACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGATATC
ATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAGGTG
GTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAGAAG
ACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAGTTG
CTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAAGCT
AAGTAAACGACGGTAA

Synonyms

Publications