jgi.p|Nanoce1779_2|572110, mRNA_1447 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572110
Unique NamemRNA_1447
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1639
Alignment locationscaffold_1:573792..575678 -

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Properties
Property NameValue
TranscriptId572196
TrackFilteredModels2
ProteinId572110
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:573792..575678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572110gene_1447Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572110mRNA_1447-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1447CDS_1447Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1447 ID=mRNA_1447|Name=jgi.p|Nanoce1779_2|572110|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp
GCAAGACCCGCATAATATAACGCATAGGTACTTCCTAGCATCCTTCATCC
CCTTCGGACAGCTTGAGGTGCCTGCGGATCGGTCTTTTGGAGACGGCGGA
CGACGGGGCGTCGGGGTCTGCGTCCTTCGTTCGTGAGAGTGCACGTTCTG
CCCAACAGCCGCGTCGAGCATTTGCCATTTTACTCACCACAGTCACTGCA
CCACCGCACACACATCAGCAAAAGACTTCTATCAAGACACCGCAACAGCT
CCGCATTTCTTGTCACCATGCTCGCTCTGGCAATGTGCAGGAACGCGGCC
GCCTCCGCTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGT
GGCGACGGCCAGCACTCGGCGGGCGTACCATGAGAACATTGTGGACCACT
ATGAGAATCCCCGGAACGTGGGCTCTTTGGACAAGAACGACGTCAATGTG
GGAACGGGCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCA
GATCCGCGTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTT
TTGGGTGTGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTC
AAGGGGAAAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGC
CGCACACTTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGG
AGGATGCCATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGT
GCGAGCGCTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAATGAAAGAGGT
TGGAACGAGAGAACAAGCGAAGATATGACAACAACAATAAATTCCGAGTG
ACTCTTTCCGGCACAACCAATGGCAGAAGTATAAACACACAATCTAGATT
TGCTGCTGCAAGAACTACCCCTTAAAAAAACAAAGTAGGCTACATGAGGA
ATCATCACGGGGTAGAGAGAGACACAGAGCCCAGCAAGAACCAGACGCCC
CGGTGCCTGTTTGGTTTTCCTGTGCGGTTAAGACTTTTTTACGAGACGAG
ACATTACAGCTGCCAGGATGTGGAACGAAAGGCATTCGCACGGTACCGAA
GAAAGGAGGATAATCAAAAAGAGTAGGATGAAAAAAGAAGGAATGCTGTC
CTGGAATAGGCCAGAAGGACAAGGAAAAGGGAGGAGGGAGAGAGTCAGAA
AGGAAAGGGATGTAAGTAGGCGAGTGAACACGAATACAAAAAGGTATTGT
GCGTGCAAATCGAAGAAAACCCATGAGCGAGAAGTTGAGAAGTAGAGGCT
AGCTTTGTTTTGTCTCCATTACTTCAACTGCAACCTGGCATGTGTATGAT
TATTTACTCGGGTAGTGCAAGTGCTGCTCTTGTTGCTGCCAGGAGCGGGC
CCAGTGGTGGACAGTGTATGTCACGGCTGGTAGTACATAAACATTCGAGG
ACGAAGAAGAGGGCGAGGAGGAGGGTACGGACACATGTGCTACGTGATTT
GGCATGGGATAGAACCAAGCAGGTGGGGCCAGTAGTATCTTATCTCTCGT
CCCCGCGTGCACTGACTGCTCCTCCAGCAGTTGCAGGTGCTCAGCTACCA
CCCGCGTGAAGAGACCTGGTCCTGTGGCCTCAATCGTGC
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protein sequence of jgi.p|Nanoce1779_2|572110

>mRNA_1447-protein ID=mRNA_1447-protein|Name=jgi.p|Nanoce1779_2|572110|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MLALAMCRNAAASASGMLCRAPQGFTGVATASTRRAYHENIVDHYENPRN
VGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSA
IASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKA
AVKDLATKKGSASAGQEQLSAMA*
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mRNA from alignment at scaffold_1:573792..575678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1447 ID=mRNA_1447|Name=jgi.p|Nanoce1779_2|572110|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_1:573792..575678- (Nannochloropsis oceanica)
GCAAGACCCGCATAATATAACGCATAGGTACTTCCTAGCATCCTTCATCC
CCTTCGGACAGCTTGAGGTGCCTGCGGATCGGTCTTTTGGAGACGGCGGA
CGACGGGGCGTCGGGGTCTGCGTCCTTCGTTCGTGAGAGTGCACGTTCTG
CCCAACAGCCGCGTCGAGCATTTGCCATTTTACTCACCACAGTCACTGCA
CCACCGCACACACATCAGCAAAAGACTTCTATCAAGACACCGCAACAGCT
CCGCATTTCTTGTCACCATGCTCGCTCTGGCAATGTGCAGGAACGCGGCC
GCCTCCGCTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGT
GGTAAGTGCTCCGGAGCATGTAATCTGTGCCATTTCTTCATACCTTCTAT
CTGAAGCCACCTTGTAATCTTTGCTCCTCTCCTTCATTCACGCCTCCCTC
CCATTCACCACTCCCTCAACAGGCGACGGCCAGCACTCGGCGGGCGTACC
ATGAGAACATTGTGGACCACTATGAGAATCCCCGGAACGTGGGCTCTTTG
GACAAGAACGACGTCAATGTGGGAACGGTACGTCATTGGAGTAGAGGTGG
ACAGTCAACATAGGCTTTCGTCTCTCTTGCCTCCCTGTCGTTTTCCCTCT
GTCCCAAACTTCATGCACAGGTGCTCCGTTCCTTTCCCATTTTTACATTT
ACAGGGCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGA
TCCGCGTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTT
GGGTGTGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAA
GGGGAAAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCG
CACACTTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAG
GATGCCATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGC
GAGCGCTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAATGAAAGAGGTTG
GAACGAGAGAACAAGCGAAGATATGACAACAACAATAAATTCCGAGTGAC
TCTTTCCGGCACAACCAATGGCAGAAGTATAAACACACAATCTAGATTTG
CTGCTGCAAGAACTACCCCTTAAAAAAACAAAGTAGGCTACATGAGGAAT
CATCACGGGGTAGAGAGAGACACAGAGCCCAGCAAGAACCAGACGCCCCG
GTGCCTGTTTGGTTTTCCTGTGCGGTTAAGACTTTTTTACGAGACGAGAC
ATTACAGCTGCCAGGATGTGGAACGAAAGGCATTCGCACGGTACCGAAGA
AAGGAGGATAATCAAAAAGAGTAGGATGAAAAAAGAAGGAATGCTGTCCT
GGAATAGGCCAGAAGGACAAGGAAAAGGGAGGAGGGAGAGAGTCAGAAAG
GAAAGGGATGTAAGTAGGCGAGTGAACACGAATACAAAAAGGTATTGTGC
GTGCAAATCGAAGAAAACCCATGAGCGAGAAGTTGAGAAGTAGAGGCTAG
CTTTGTTTTGTCTCCATTACTTCAACTGCAACCTGGCATGTGTATGATTA
TTTACTCGGGTAGTGCAAGTGCTGCTCTTGTTGCTGCCAGGAGCGGGCCC
AGTGGTGGACAGTGTATGTCACGGCTGGTAGTACATAAACATTCGAGGAC
GAAGAAGAGGGCGAGGAGGAGGGTACGGACACATGTGCTACGTGATTTGG
CATGGGATAGAACCAAGCAGGTGGGGCCAGTAGTATCTTATCTCTCGTCC
CCGCGTGCACTGACTGCTCCTCCAGCAGTTGCAGGTGCTCAGCTACCACC
CGCGTGAAGAGACCTGGTCCTGTGGCCTCAATCGTGC
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Coding sequence (CDS) from alignment at scaffold_1:573792..575678-

>mRNA_1447 ID=mRNA_1447|Name=jgi.p|Nanoce1779_2|572110|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_1:573792..575678- (Nannochloropsis oceanica)
GGCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCCG
CGTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGGT
GTGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGGG
AAAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCGCACA
CTTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGATG
CCATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAGC
GCTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAGCGACGGCCAGCACTCG
GCGGGCGTACCATGAGAACATTGTGGACCACTATGAGAATCCCCGGAACG
TGGGCTCTTTGGACAAGAACGACGTCAATGTGGGAACGATGCTCGCTCTG
GCAATGTGCAGGAACGCGGCCGCCTCCGCTAGTGGCATGCTTTGTCGGGC
TCCGCAAGGGTTCACCGGCGTGGGCTTAGTGGGCGCCCCCGCCTGTGGTG
ATGTGATGAAACTTCAGATCCGCGTGGACGCAGATGGAAAGATCGTGGAG
AGCAAGTTCAAGACTTTTGGGTGTGGCTCGGCGATTGCCTCCAGTTCGGT
TGCAACTGAATGGCTCAAGGGGAAAACCGTGGACGAATGCCTGACGATCA
AGAACACTGATATTGCCGCACACTTGAAGTTGCCCCCTGTAAAGCTGCAT
TGTTCCATGTTGGCGGAGGATGCCATCAAGGCGGCAGTCAAGGATCTGGC
GACGAAGAAGGGAAGTGCGAGCGCTGGCCAGGAGCAGCTGTCCGCGATGG
CCTAAGCGACGGCCAGCACTCGGCGGGCGTACCATGAGAACATTGTGGAC
CACTATGAGAATCCCCGGAACGTGGGCTCTTTGGACAAGAACGACGTCAA
TGTGGGAACGATGCTCGCTCTGGCAATGTGCAGGAACGCGGCCGCCTCCG
CTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGTGGGCTTA
GTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCCGCGTGGA
CGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGGTGTGGCT
CGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGGGAAAACC
GTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCGCACACTTGAA
GTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGATGCCATCA
AGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAGCGCTGGC
CAGGAGCAGCTGTCCGCGATGGCCTAAGCGACGGCCAGCACTCGGCGGGC
GTACCATGAGAACATTGTGGACCACTATGAGAATCCCCGGAACGTGGGCT
CTTTGGACAAGAACGACGTCAATGTGGGAACGATGCTCGCTCTGGCAATG
TGCAGGAACGCGGCCGCCTCCGCTAGTGGCATGCTTTGTCGGGCTCCGCA
AGGGTTCACCGGCGTG
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Synonyms
Publications