jgi.p|Nanoce1779_2|572107, mRNA_1446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572107
Unique NamemRNA_1446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1009
Alignment locationscaffold_1:572730..573816 +

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Properties
Property NameValue
TranscriptId572193
TrackFilteredModels2
ProteinId572107
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:572730..573816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572107gene_1446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572107mRNA_1446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1446CDS_1446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Nanoce1779_2|572107|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGGTTGGAGCCACTTCCTTTGGACGGATGATAACAT
AATTCCCCTCCTGGACAGCCTGCGGAACAAGTCTGCTTACATTGCGGCGC
CCAACTACGGACAAAAATCAGATATTCTGCGGTATGAACTATTGCATCGA
TACGGAGGAACTTACGTAGACGTGGACATGGAGTGTGTGCGGTCGTTGGA
CCTCCACTCGGAGGCAGGCCCGACCTTCTACGCGGGTTTCTCCAACACGG
GCACAGTCGAGCTGAACAACGGGCTCATCGGGTGGGTGCGTTCATCAAAT
GACTTTTGAAAAACCAATTGACGGATTGGTCCCTTTTTTTCACGAAAAGT
TTCGCCCGTCTAACATCTCTTGTTCTCAATTCACAGAGCCCTCCCGCAGC
ACCCTATCTTATCCAGCTTGATCGAGCGCATCCACACCCAGCATTTCTCG
CTTCCTCCTCGTCCCCCCCTTCTTCCTTCTGAGCCATCCACACTATCATC
ATCACCATCAACTTCACCATTACCATCAAAAGTACCCTCCAACTTTGCTG
CAATTTTAGGATTTCTCGGCCAGGGAGAAGCGGCAGCGGTAAAGCAAGCC
GTGGAAGCGGGAGTAAGGAATGTATCGTCCATGGGCACGATTGAGGCCAC
AGGACCAGG
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protein sequence of jgi.p|Nanoce1779_2|572107

>mRNA_1446-protein ID=mRNA_1446-protein|Name=jgi.p|Nanoce1779_2|572107|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MEASTPVASLLGDCDLQDYVHFFLEDDARQKPVIAEEPSSRRCRACWLDI
AKEATFLHQALTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPER
FQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQK
SDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELN
NGLIGWVRSSNDF*
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mRNA from alignment at scaffold_1:572730..573816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Nanoce1779_2|572107|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at scaffold_1:572730..573816+ (Nannochloropsis oceanica)
CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGGTAAATGGCCTATGTATCCCATATCGGGCTTTCT
TTTTACATGTGGCTTACATTCTTTTTTTTTTCGCACTTGAAAAGGTTGGA
GCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACAGCCTG
CGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAATCAGA
TATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGTAGACG
TGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAGGCCCG
ACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAACAACGG
GCTCATCGGGTGGGTGCGTTCATCAAATGACTTTTGAAAAACCAATTGAC
GGATTGGTCCCTTTTTTTCACGAAAAGTTTCGCCCGTCTAACATCTCTTG
TTCTCAATTCACAGAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT
CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC
TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA
CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA
GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG
TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGG
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Coding sequence (CDS) from alignment at scaffold_1:572730..573816+

>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Nanoce1779_2|572107|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_1:572730..573816+ (Nannochloropsis oceanica)
ATGGAGGCCTCAACACCGGTGGCCAGTTTGCTGGGGGACTGCGACCTCCA
AGATTATGTCCATTTTTTCCTGGAGGACGACGCGAGGCAGAAGCCTGTCA
TTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTGCGTGCTGGCTGGACATC
GCAAAAGAAGCAACATTCCTCCATCAAGCCTTGACCGAGTACAAATACAC
CCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTCACCCAATTATGCCTGTA
TCCCTAAAATCCTTCACCACATTTGGCTGGGCTCTCCCTTCCCCGAACGC
TTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAACACCCAACAGAAGACGG
TTGGAGCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACA
GCCTGCGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAA
TCAGATATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGT
AGACGTGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAG
GCCCGACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAAC
AACGGGCTCATCGGGTGGGTGCGTTCATCAAATGACTTTTGAATGGAGGC
CTCAACACCGGTGGCCAGTTTGCTGGGGGACTGCGACCTCCAAGATTATG
TCCATTTTTTCCTGGAGGACGACGCGAGGCAGAAGCCTGTCATTGCTGAG
GAGCCGTCCTCGCGCCGCTGCCGTGCGTGCTGGCTGGACATCGCAAAAGA
AGCAACATTCCTCCATCAAGCCTTGACCGAGTACAAATACACCCTTCGCA
TCCTGCAGGGGCCGCCGGCTTCGTCACCCAATTATGCCTGTATCCCTAAA
ATCCTTCACCACATTTGGCTGGGCTCTCCCTTCCCCGAACGCTTCCAAGC
CTTCCGTAAAACCTGGCTGAAGCAACACCCAACAGAAGACGGTTGGAGCC
ACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACAGCCTGCGG
AACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAATCAGATAT
TCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGTAGACGTGG
ACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAGGCCCGACC
TTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAACAACGGGCT
CATCGGGTGGGTGCGTTCATCAAATGACTTTTGA
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Synonyms
Publications