jgi.p|Nanoce1779_2|572106, mRNA_1445 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572106
Unique Name	mRNA_1445
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1858
Alignment location	scaffold_1:570738..572595 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572192
Track	FilteredModels2
ProteinId	572106

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:570738..572595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572106	gene_1445	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572106	mRNA_1445-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1445	CDS_1445	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:570738..572595+
coding sequence from alignment at scaffold_1:570738..572595+

mRNA sequence

>mRNA_1445 ID=mRNA_1445|Name=jgi.p|Nanoce1779_2|572106|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
CAGGTAGAGCAAGTGGGGGCCCGCACACGATTAGATGACACTTATGGTAC
CTGTCGGTGGCCGGGGATGGGAGGAGGAAGGCAACACGAATACTGCTGCT
CCAGCTGAACAAGAGGACACAAACCGGGCAGCTGAGGCCATGGAGGAGAG
GATTGTCAGTACTCAAGGGGCGCTAGGAGCGGAAATTCCGGCTATTCAGT
GGCGGCCGACAGCATCGACTATAAATGCCCTACGAAATCGACGGGCCGCC
GTGCTGAATCTGGAAAGAGAGCACGAGGAGCTGGAACAGGAAGCCAACGG
TGCGGAAGCGGGGTCCGCGGGCATTCCATCGCCCCACTCCCCCACCAGAC
GTTCGCCGCCCTTCTCGACCAAGATTATTATGTCACCTTCGCAGCAACGT
CGGCTCATGTGGACGGTGGAGCGGACGCCGCTCAGTCGTCGAGGGAGGCA
ACAGAAGCAACATTACCGGCACGTCCAACGCGGCCGCCGGCCCTGGGCAG
TAGTCTGGTCGCTAATGCTGCTCCTCCTCGTCCTGGCCATGCCCTTGCTG
CAAACATGGCGCCGGCTGTGGTTGACACATCAAATTGGGGTACAAGCGGC
GTTTGTGTGCATTGTGAGCCATTTCTTTCCGTTGGTGGACCATTCGGACG
ATTTTGTGAATAGCGAGAGATTAGCAAAGGATCGGCGTCTTCTGGATTTG
GCTAACCACTTGAACATGGCGCCGGCGATTGCTGGTACTGAAGATATTGC
CGTCTCATCCAGCAAGGGGAACCACAGTATCCCAGTTCGACTGTTTCGCC
CCCTGAATGCCCGGGGATGGGGGCAGAAGAAGACTACTTTGGAGGAGGGA
GAGGAGGGAAAAGGACTGCTGGAGTTGTCCAAGGTGTTGGTCTGGATTCA
TGGTGGGGGCTGGACCATTGGTAGCATTGAGTCGGATGATAAGATCGCCC
GTCGGTTGGCGGCAGCGACGGGGGCGGTGGTGGCTAGCGTGGAGTACCGG
CTGGCGCCTGAATTTAAGTATCCGGCTCAGTTGGATGATACGGTAGACGC
TCTTGAGTTTTTGTTGACAAAAGGGGAGGACTTTGGGCTGGACACGCGGA
AGATAGCCGTGGCGGGTGAGAGCGCAGGGGGTCATTTGACGATTGTGTCG
GCGATGGCATTGAACTCAGCCAAGGCCAGGTTGTGTGGGATCCTGCCAGT
GGTGCCTGCCACTGACTATGGTTGTGAAAGTGCGTCGTGTGATCAATTCA
ATGACGGTTTCCTACTGACACAAGGTCAGGTCCGCGCGTTTTGGAATGCT
AAATTGTCGGACCCAGAGACAGAGCAGCACGATTTCCTGGTTTCGCCGCT
CCGGGCTCCTCAAGAGGTATTTGATGACATGCCGCCCATGCTGGTTATGA
CTGCGGGCCTTGATCCGTTGCGTGACGAAGGTGAGGCCTTTGTGGATCGA
GCAAGGGAAATGGGCGCGAGAGTAGAATTAAAACGATTTGAACACACGAT
TCATGGTTTTTTTGGTCGTTTGGTGACGGGCGGTGCGAGGGGGATTATAC
ATGCGGCAGAGTGGTTGGAGCGTACGTGTGAGTGGGGGGTAATAGACGAG
ATGAAGGAGGATTAAGAAGTCCACCTAGGTTGGATTGGCGTTTTTCTGAT
TCACACCAATTTTGACTTACTGTGGTGTATTGAAATGTACCTAGCATGGG
AGCTTGGGCCAAGGTGTAGTTGTAATAATAGAGAGACTGAAGAAGAGGGA
GGAAGAAAGAGGCTCGTTTGTGCACTGGCGTGCGTGCACTCGTCCGCGTG
TGTGACAAATTACGGGTCAACGAATAATACTTATGTAAAACAATTGCTTA
ACGCGCAT

protein sequence of jgi.p|Nanoce1779_2|572106

>mRNA_1445-protein ID=mRNA_1445-protein|Name=jgi.p|Nanoce1779_2|572106|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MTLMVPVGGRGWEEEGNTNTAAPAEQEDTNRAAEAMEERIVSTQGALGAE
IPAIQWRPTASTINALRNRRAAVLNLEREHEELEQEANGAEAGSAGIPSP
HSPTRRSPPFSTKIIMSPSQQRRLMWTVERTPLSRRGRQQKQHYRHVQRG
RRPWAVVWSLMLLLLVLAMPLLQTWRRLWLTHQIGVQAAFVCIVSHFFPL
VDHSDDFVNSERLAKDRRLLDLANHLNMAPAIAGTEDIAVSSSKGNHSIP
VRLFRPLNARGWGQKKTTLEEGEEGKGLLELSKVLVWIHGGGWTIGSIES
DDKIARRLAAATGAVVASVEYRLAPEFKYPAQLDDTVDALEFLLTKGEDF
GLDTRKIAVAGESAGGHLTIVSAMALNSAKARLCGILPVVPATDYGCESA
SCDQFNDGFLLTQGQVRAFWNAKLSDPETEQHDFLVSPLRAPQEVFDDMP
PMLVMTAGLDPLRDEGEAFVDRAREMGARVELKRFEHTIHGFFGRLVTGG
ARGIIHAAEWLERTCEWGVIDEMKED*

mRNA from alignment at scaffold_1:570738..572595+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1445 ID=mRNA_1445|Name=jgi.p|Nanoce1779_2|572106|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp|location=Sequence derived from alignment at scaffold_1:570738..572595+ (Nannochloropsis oceanica)
CAGGTAGAGCAAGTGGGGGCCCGCACACGATTAGATGACACTTATGGTAC
CTGTCGGTGGCCGGGGATGGGAGGAGGAAGGCAACACGAATACTGCTGCT
CCAGCTGAACAAGAGGACACAAACCGGGCAGCTGAGGCCATGGAGGAGAG
GATTGTCAGTACTCAAGGGGCGCTAGGAGCGGAAATTCCGGCTATTCAGT
GGCGGCCGACAGCATCGACTATAAATGCCCTACGAAATCGACGGGCCGCC
GTGCTGAATCTGGAAAGAGAGCACGAGGAGCTGGAACAGGAAGCCAACGG
TGCGGAAGCGGGGTCCGCGGGCATTCCATCGCCCCACTCCCCCACCAGAC
GTTCGCCGCCCTTCTCGACCAAGATTATTATGTCACCTTCGCAGCAACGT
CGGCTCATGTGGACGGTGGAGCGGACGCCGCTCAGTCGTCGAGGGAGGCA
ACAGAAGCAACATTACCGGCACGTCCAACGCGGCCGCCGGCCCTGGGCAG
TAGTCTGGTCGCTAATGCTGCTCCTCCTCGTCCTGGCCATGCCCTTGCTG
CAAACATGGCGCCGGCTGTGGTTGACACATCAAATTGGGGTACAAGCGGC
GTTTGTGTGCATTGTGAGCCATTTCTTTCCGTTGGTGGACCATTCGGACG
ATTTTGTGAATAGCGAGAGATTAGCAAAGGATCGGCGTCTTCTGGATTTG
GCTAACCACTTGAACATGGCGCCGGCGATTGCTGGTACTGAAGATATTGC
CGTCTCATCCAGCAAGGGGAACCACAGTATCCCAGTTCGACTGTTTCGCC
CCCTGAATGCCCGGGGATGGGGGCAGAAGAAGACTACTTTGGAGGAGGGA
GAGGAGGGAAAAGGACTGCTGGAGTTGTCCAAGGTGTTGGTCTGGATTCA
TGGTGGGGGCTGGACCATTGGTAGCATTGAGTCGGATGATAAGATCGCCC
GTCGGTTGGCGGCAGCGACGGGGGCGGTGGTGGCTAGCGTGGAGTACCGG
CTGGCGCCTGAATTTAAGTATCCGGCTCAGTTGGATGATACGGTAGACGC
TCTTGAGTTTTTGTTGACAAAAGGGGAGGACTTTGGGCTGGACACGCGGA
AGATAGCCGTGGCGGGTGAGAGCGCAGGGGGTCATTTGACGATTGTGTCG
GCGATGGCATTGAACTCAGCCAAGGCCAGGTTGTGTGGGATCCTGCCAGT
GGTGCCTGCCACTGACTATGGTTGTGAAAGTGCGTCGTGTGATCAATTCA
ATGACGGTTTCCTACTGACACAAGGTCAGGTCCGCGCGTTTTGGAATGCT
AAATTGTCGGACCCAGAGACAGAGCAGCACGATTTCCTGGTTTCGCCGCT
CCGGGCTCCTCAAGAGGTATTTGATGACATGCCGCCCATGCTGGTTATGA
CTGCGGGCCTTGATCCGTTGCGTGACGAAGGTGAGGCCTTTGTGGATCGA
GCAAGGGAAATGGGCGCGAGAGTAGAATTAAAACGATTTGAACACACGAT
TCATGGTTTTTTTGGTCGTTTGGTGACGGGCGGTGCGAGGGGGATTATAC
ATGCGGCAGAGTGGTTGGAGCGTACGTGTGAGTGGGGGGTAATAGACGAG
ATGAAGGAGGATTAAGAAGTCCACCTAGGTTGGATTGGCGTTTTTCTGAT
TCACACCAATTTTGACTTACTGTGGTGTATTGAAATGTACCTAGCATGGG
AGCTTGGGCCAAGGTGTAGTTGTAATAATAGAGAGACTGAAGAAGAGGGA
GGAAGAAAGAGGCTCGTTTGTGCACTGGCGTGCGTGCACTCGTCCGCGTG
TGTGACAAATTACGGGTCAACGAATAATACTTATGTAAAACAATTGCTTA
ACGCGCAT

Coding sequence (CDS) from alignment at scaffold_1:570738..572595+

>mRNA_1445 ID=mRNA_1445|Name=jgi.p|Nanoce1779_2|572106|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_1:570738..572595+ (Nannochloropsis oceanica)
ATGACACTTATGGTACCTGTCGGTGGCCGGGGATGGGAGGAGGAAGGCAA
CACGAATACTGCTGCTCCAGCTGAACAAGAGGACACAAACCGGGCAGCTG
AGGCCATGGAGGAGAGGATTGTCAGTACTCAAGGGGCGCTAGGAGCGGAA
ATTCCGGCTATTCAGTGGCGGCCGACAGCATCGACTATAAATGCCCTACG
AAATCGACGGGCCGCCGTGCTGAATCTGGAAAGAGAGCACGAGGAGCTGG
AACAGGAAGCCAACGGTGCGGAAGCGGGGTCCGCGGGCATTCCATCGCCC
CACTCCCCCACCAGACGTTCGCCGCCCTTCTCGACCAAGATTATTATGTC
ACCTTCGCAGCAACGTCGGCTCATGTGGACGGTGGAGCGGACGCCGCTCA
GTCGTCGAGGGAGGCAACAGAAGCAACATTACCGGCACGTCCAACGCGGC
CGCCGGCCCTGGGCAGTAGTCTGGTCGCTAATGCTGCTCCTCCTCGTCCT
GGCCATGCCCTTGCTGCAAACATGGCGCCGGCTGTGGTTGACACATCAAA
TTGGGGTACAAGCGGCGTTTGTGTGCATTGTGAGCCATTTCTTTCCGTTG
GTGGACCATTCGGACGATTTTGTGAATAGCGAGAGATTAGCAAAGGATCG
GCGTCTTCTGGATTTGGCTAACCACTTGAACATGGCGCCGGCGATTGCTG
GTACTGAAGATATTGCCGTCTCATCCAGCAAGGGGAACCACAGTATCCCA
GTTCGACTGTTTCGCCCCCTGAATGCCCGGGGATGGGGGCAGAAGAAGAC
TACTTTGGAGGAGGGAGAGGAGGGAAAAGGACTGCTGGAGTTGTCCAAGG
TGTTGGTCTGGATTCATGGTGGGGGCTGGACCATTGGTAGCATTGAGTCG
GATGATAAGATCGCCCGTCGGTTGGCGGCAGCGACGGGGGCGGTGGTGGC
TAGCGTGGAGTACCGGCTGGCGCCTGAATTTAAGTATCCGGCTCAGTTGG
ATGATACGGTAGACGCTCTTGAGTTTTTGTTGACAAAAGGGGAGGACTTT
GGGCTGGACACGCGGAAGATAGCCGTGGCGGGTGAGAGCGCAGGGGGTCA
TTTGACGATTGTGTCGGCGATGGCATTGAACTCAGCCAAGGCCAGGTTGT
GTGGGATCCTGCCAGTGGTGCCTGCCACTGACTATGGTTGTGAAAGTGCG
TCGTGTGATCAATTCAATGACGGTTTCCTACTGACACAAGGTCAGGTCCG
CGCGTTTTGGAATGCTAAATTGTCGGACCCAGAGACAGAGCAGCACGATT
TCCTGGTTTCGCCGCTCCGGGCTCCTCAAGAGGTATTTGATGACATGCCG
CCCATGCTGGTTATGACTGCGGGCCTTGATCCGTTGCGTGACGAAGGTGA
GGCCTTTGTGGATCGAGCAAGGGAAATGGGCGCGAGAGTAGAATTAAAAC
GATTTGAACACACGATTCATGGTTTTTTTGGTCGTTTGGTGACGGGCGGT
GCGAGGGGGATTATACATGCGGCAGAGTGGTTGGAGCGTACGTGTGAGTG
GGGGGTAATAGACGAGATGAAGGAGGATTAA

Synonyms

Publications