jgi.p|Nanoce1779_2|667386, mRNA_1443 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667386
Unique Name	mRNA_1443
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2844
Alignment location	scaffold_1:558787..561630 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667472
Track	FilteredModels2
ProteinId	667386

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:558787..561630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667386	gene_1443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667386	mRNA_1443-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1443	CDS_1443	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:558787..561630+
coding sequence from alignment at scaffold_1:558787..561630+

mRNA sequence

>mRNA_1443 ID=mRNA_1443|Name=jgi.p|Nanoce1779_2|667386|organism=Nannochloropsis oceanica|type=mRNA|length=2844bp
ACAGCGGCACACGCCATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGT
GGGCAGGAGCCACAGCTGCGCGGCAACGTCGACAAGGGTGCTACTTGACG
CCGGCGCAAACCTTGGGCATGCGATTCCCCTCCGCATGGCGCATTACCTT
GGGCCTTGGCTAGCCCCTGAAGGAGACAATCATACGGAAGTGGCAACAGA
GCTGATGGCGATGGTAACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAAT
ACGTGAAGAAGGCAGAGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCG
ACCTACCATGCCTTGATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGA
GAAAAATTTGGCGGATGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCG
GTGATATCACGGTCATGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGG
AATGCGAGCACAAAGGTGGACACGGGCGCAGCATTTGCGGCGTATGAGCT
TTTGCAATCCCTAGGATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTG
CCCCGGCCACGCTACAAAATTTACCTGAGAAAGACGGTCACATGTCAATG
CGGTGGGAAGCACCTCGATGGCGGTCAAGGACCTTTCACCTCCACACGCA
GCATCCGTTGGAATTGACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGT
CCTTAGACCGTGGGGGCGTTGACACGGCGGCACGGCTAAGGGTCGAAGAT
GCATGGGCGGGTTTGGATCGAATAGAGCGACGATGGCTTGCCACAGGATT
TGTCGAGGAGAGAGGGAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAG
CTTCCGGTGAAACACCCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTA
ATAGCGCGGGGAGAGCACTGTGAATTATGGGAAGAAATGGTCCCTGATGT
GTCGCGTTTTTTTGAATGGAGTGTCGCACATCGCTTGAATCGGATCGAAT
GGATTTTGTTGGGTAACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTA
CGGCAAGCCCGGCTGCGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTT
GATGGTTGGGGTGGATGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGG
TGATGACGACGACGTTGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATG
GAACGGGTGGATTGGTTGATCGGTGGTGCTAATTTTGATTTTCTGAGCAC
GGAAGCGGGGTTTTCCGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGC
GGTTGCTGAATGTGTTCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAG
GCGACTGTCAAGGTCCACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCA
GGACCCTCGGACAGACACACCGTTAAATTTTAATTTCCTCCCGTCGTACG
CGGGGCCGGAAATGGGGGTGTTGCCTCACACGGTGCAGGCATATGCATTG
GATGATCCTAGTGCCGGTGTGTACGGCAATAACAATTTTAGCTTTATGGC
TGATTATATAAGGTGGGAGGGGGGTCAAGGGGGGGCGAGGGGGGGGGAGG
AGGGCTTTAGGCGGCAGGTGCATTTCTATCCAGAGACGGCTTATTTCATA
AATGTTGATATCGATGTGCCCCTTTTTTTGCCAGTGTATGCGGAAAGGAG
GTTACATGATTTATTGTTGTTGGCCGGGATGGAGGAAAAGGAAGGATTTC
GGTTGGCAGGGACGTGGAATTTCGACTCGGGGTGGGAGTGGGGGTATTGG
TTGAATGATATCATCATGGCTGCTTCTATGTGGAATCCTACACAATTTCA
AGAGGTGGAAGGAGAGAAGGACTATTGCAGCGGCGGCAAAAGCAATAGCT
GTGGTAGAAATGTTACGCTTAAAGCGTTCCAACGGGCTGTGGAGCAGGCG
TTGCGCCAGCTGCCCCCAACAGTGCGAGCTCAGATGGCCGAGTGGGTGGC
CGACCTGGTGCATTTTCAATATCATACTTTACTGTTGGGTGAGCTGGGCG
ACGAGGCTTCCGTTCCATCCCCTAACCAAATCAAACTCTCCGGGATTGCC
TATTTATGTGGGAAAGATACGTGGGTGGAACTCCCCCGACGATTGGGACT
GACTTTCACTCAGCCTGACTACGTGGGATTTGATGAGCACAATCACCCAG
ATTACCCTCATGTTCAACCTCTCCTTGCTTATATGCGAGCCCGCACGGCG
ACTTTGCATGCGAAAGGTGCAGCGTTGGTAGCTGCTCTTGCAGAAAGTTT
GGACAAGCTCTCGCCGCACCTGCTGGAGCACCTACAGGAAATGCGGGATG
GTATTCACTTGCAGGCGTTGCGAGCGCATCACATTGCCCTACTCTACGAG
GCCACTTCGCCCGCTTCCATGGCAATAGACTCCAGTCAAGAAAGAAAAGA
ACAACGCCAGCTTCTCTTGGCAGAAGGTCGGGCGGTGCTGGAGAAGGCTA
CGGATGTGGTGCGGGATCGCGAAAAGCAGTACCACGCCCCGATGGGTCGC
ATTGCGGGGTGGCGCGAGAACCCGACAGTCTATCATTGGGATTATCTATG
GAGTGTCAAGAGCTTATACTTTTGGTGGAGGGATCAAGGAAGGGCAGAGG
GAGTCAGCCTAGCCTCACGTTGGTCATTTTGTTATTTGAATCGGATGGAT
CCATCTGAGGTGGCTGTGGGGATGGGCAAGAATTTTCTGAGGGCGATTGG
GACGTATTTGCCGCATGTCTTGCCTTGGAGCGAGACGGTGACTGATTGTC
TGGCGCCTCCGTCGGAAGAGTTTGTATTTCCGCGGGATTTGTAG

protein sequence of jgi.p|Nanoce1779_2|667386

>mRNA_1443-protein ID=mRNA_1443-protein|Name=jgi.p|Nanoce1779_2|667386|organism=Nannochloropsis oceanica|type=polypeptide|length=943bp
MRSLWLALLGLVGRSHSCAATSTRVLLDAGANLGHAIPLRMAHYLGPWLA
PEGDNHTEVATELMAMVTGKSGSRKRRKYVKKAEDVLLLSLGDSATYHAL
MEYVPEWRDAPEKNLADAESFGVFTLRCGDITVMAGNGFPIDKAWNASTK
VDTGAAFAAYELLQSLGFAFWSPLEGPIAPATLQNLPEKDGHMSMRWEAP
RWRSRTFHLHTQHPLELTDVLQGFDLPLSLDRGGVDTAARLRVEDAWAGL
DRIERRWLATGFVEERGREGDEDECSAEASGETPAVAAKWACAAVIARGE
HCELWEEMVPDVSRFFEWSVAHRLNRIEWILLGNRRWGDLVASPLRQARL
RFLAGLGQGMGLMVGVDDPIAFQQQHSWVMTTTLAPEAWQVASVMERVDW
LIGGANFDFLSTEAGFSEFSAPDDKLMLRLLNVFASHVNGTWGKEATVKV
HCSSNQFCKHFQDPRTDTPLNFNFLPSYAGPEMGVLPHTVQAYALDDPSA
GVYGNNNFSFMADYIRWEGGQGGARGGEEGFRRQVHFYPETAYFINVDID
VPLFLPVYAERRLHDLLLLAGMEEKEGFRLAGTWNFDSGWEWGYWLNDII
MAASMWNPTQFQEVEGEKDYCSGGKSNSCGRNVTLKAFQRAVEQALRQLP
PTVRAQMAEWVADLVHFQYHTLLLGELGDEASVPSPNQIKLSGIAYLCGK
DTWVELPRRLGLTFTQPDYVGFDEHNHPDYPHVQPLLAYMRARTATLHAK
GAALVAALAESLDKLSPHLLEHLQEMRDGIHLQALRAHHIALLYEATSPA
SMAIDSSQERKEQRQLLLAEGRAVLEKATDVVRDREKQYHAPMGRIAGWR
ENPTVYHWDYLWSVKSLYFWWRDQGRAEGVSLASRWSFCYLNRMDPSEVA
VGMGKNFLRAIGTYLPHVLPWSETVTDCLAPPSEEFVFPRDL*

mRNA from alignment at scaffold_1:558787..561630+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1443 ID=mRNA_1443|Name=jgi.p|Nanoce1779_2|667386|organism=Nannochloropsis oceanica|type=mRNA|length=2844bp|location=Sequence derived from alignment at scaffold_1:558787..561630+ (Nannochloropsis oceanica)
ACAGCGGCACACGCCATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGT
GGGCAGGAGCCACAGCTGCGCGGCAACGTCGACAAGGGTGCTACTTGACG
CCGGCGCAAACCTTGGGCATGCGATTCCCCTCCGCATGGCGCATTACCTT
GGGCCTTGGCTAGCCCCTGAAGGAGACAATCATACGGAAGTGGCAACAGA
GCTGATGGCGATGGTAACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAAT
ACGTGAAGAAGGCAGAGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCG
ACCTACCATGCCTTGATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGA
GAAAAATTTGGCGGATGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCG
GTGATATCACGGTCATGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGG
AATGCGAGCACAAAGGTGGACACGGGCGCAGCATTTGCGGCGTATGAGCT
TTTGCAATCCCTAGGATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTG
CCCCGGCCACGCTACAAAATTTACCTGAGAAAGACGGTCACATGTCAATG
CGGTGGGAAGCACCTCGATGGCGGTCAAGGACCTTTCACCTCCACACGCA
GCATCCGTTGGAATTGACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGT
CCTTAGACCGTGGGGGCGTTGACACGGCGGCACGGCTAAGGGTCGAAGAT
GCATGGGCGGGTTTGGATCGAATAGAGCGACGATGGCTTGCCACAGGATT
TGTCGAGGAGAGAGGGAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAG
CTTCCGGTGAAACACCCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTA
ATAGCGCGGGGAGAGCACTGTGAATTATGGGAAGAAATGGTCCCTGATGT
GTCGCGTTTTTTTGAATGGAGTGTCGCACATCGCTTGAATCGGATCGAAT
GGATTTTGTTGGGTAACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTA
CGGCAAGCCCGGCTGCGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTT
GATGGTTGGGGTGGATGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGG
TGATGACGACGACGTTGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATG
GAACGGGTGGATTGGTTGATCGGTGGTGCTAATTTTGATTTTCTGAGCAC
GGAAGCGGGGTTTTCCGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGC
GGTTGCTGAATGTGTTCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAG
GCGACTGTCAAGGTCCACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCA
GGACCCTCGGACAGACACACCGTTAAATTTTAATTTCCTCCCGTCGTACG
CGGGGCCGGAAATGGGGGTGTTGCCTCACACGGTGCAGGCATATGCATTG
GATGATCCTAGTGCCGGTGTGTACGGCAATAACAATTTTAGCTTTATGGC
TGATTATATAAGGTGGGAGGGGGGTCAAGGGGGGGCGAGGGGGGGGGAGG
AGGGCTTTAGGCGGCAGGTGCATTTCTATCCAGAGACGGCTTATTTCATA
AATGTTGATATCGATGTGCCCCTTTTTTTGCCAGTGTATGCGGAAAGGAG
GTTACATGATTTATTGTTGTTGGCCGGGATGGAGGAAAAGGAAGGATTTC
GGTTGGCAGGGACGTGGAATTTCGACTCGGGGTGGGAGTGGGGGTATTGG
TTGAATGATATCATCATGGCTGCTTCTATGTGGAATCCTACACAATTTCA
AGAGGTGGAAGGAGAGAAGGACTATTGCAGCGGCGGCAAAAGCAATAGCT
GTGGTAGAAATGTTACGCTTAAAGCGTTCCAACGGGCTGTGGAGCAGGCG
TTGCGCCAGCTGCCCCCAACAGTGCGAGCTCAGATGGCCGAGTGGGTGGC
CGACCTGGTGCATTTTCAATATCATACTTTACTGTTGGGTGAGCTGGGCG
ACGAGGCTTCCGTTCCATCCCCTAACCAAATCAAACTCTCCGGGATTGCC
TATTTATGTGGGAAAGATACGTGGGTGGAACTCCCCCGACGATTGGGACT
GACTTTCACTCAGCCTGACTACGTGGGATTTGATGAGCACAATCACCCAG
ATTACCCTCATGTTCAACCTCTCCTTGCTTATATGCGAGCCCGCACGGCG
ACTTTGCATGCGAAAGGTGCAGCGTTGGTAGCTGCTCTTGCAGAAAGTTT
GGACAAGCTCTCGCCGCACCTGCTGGAGCACCTACAGGAAATGCGGGATG
GTATTCACTTGCAGGCGTTGCGAGCGCATCACATTGCCCTACTCTACGAG
GCCACTTCGCCCGCTTCCATGGCAATAGACTCCAGTCAAGAAAGAAAAGA
ACAACGCCAGCTTCTCTTGGCAGAAGGTCGGGCGGTGCTGGAGAAGGCTA
CGGATGTGGTGCGGGATCGCGAAAAGCAGTACCACGCCCCGATGGGTCGC
ATTGCGGGGTGGCGCGAGAACCCGACAGTCTATCATTGGGATTATCTATG
GAGTGTCAAGAGCTTATACTTTTGGTGGAGGGATCAAGGAAGGGCAGAGG
GAGTCAGCCTAGCCTCACGTTGGTCATTTTGTTATTTGAATCGGATGGAT
CCATCTGAGGTGGCTGTGGGGATGGGCAAGAATTTTCTGAGGGCGATTGG
GACGTATTTGCCGCATGTCTTGCCTTGGAGCGAGACGGTGACTGATTGTC
TGGCGCCTCCGTCGGAAGAGTTTGTATTTCCGCGGGATTTGTAG

Coding sequence (CDS) from alignment at scaffold_1:558787..561630+

>mRNA_1443 ID=mRNA_1443|Name=jgi.p|Nanoce1779_2|667386|organism=Nannochloropsis oceanica|type=CDS|length=2829bp|location=Sequence derived from alignment at scaffold_1:558787..561630+ (Nannochloropsis oceanica)
ATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGTGGGCAGGAGCCACAG
CTGCGCGGCAACGTCGACAAGGGTGCTACTTGACGCCGGCGCAAACCTTG
GGCATGCGATTCCCCTCCGCATGGCGCATTACCTTGGGCCTTGGCTAGCC
CCTGAAGGAGACAATCATACGGAAGTGGCAACAGAGCTGATGGCGATGGT
AACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAATACGTGAAGAAGGCAG
AGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCGACCTACCATGCCTTG
ATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGAGAAAAATTTGGCGGA
TGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCGGTGATATCACGGTCA
TGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGGAATGCGAGCACAAAG
GTGGACACGGGCGCAGCATTTGCGGCGTATGAGCTTTTGCAATCCCTAGG
ATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTGCCCCGGCCACGCTAC
AAAATTTACCTGAGAAAGACGGTCACATGTCAATGCGGTGGGAAGCACCT
CGATGGCGGTCAAGGACCTTTCACCTCCACACGCAGCATCCGTTGGAATT
GACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGTCCTTAGACCGTGGGG
GCGTTGACACGGCGGCACGGCTAAGGGTCGAAGATGCATGGGCGGGTTTG
GATCGAATAGAGCGACGATGGCTTGCCACAGGATTTGTCGAGGAGAGAGG
GAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAGCTTCCGGTGAAACAC
CCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTAATAGCGCGGGGAGAG
CACTGTGAATTATGGGAAGAAATGGTCCCTGATGTGTCGCGTTTTTTTGA
ATGGAGTGTCGCACATCGCTTGAATCGGATCGAATGGATTTTGTTGGGTA
ACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTACGGCAAGCCCGGCTG
CGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTTGATGGTTGGGGTGGA
TGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGGTGATGACGACGACGT
TGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATGGAACGGGTGGATTGG
TTGATCGGTGGTGCTAATTTTGATTTTCTGAGCACGGAAGCGGGGTTTTC
CGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGCGGTTGCTGAATGTGT
TCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAGGCGACTGTCAAGGTC
CACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCAGGACCCTCGGACAGA
CACACCGTTAAATTTTAATTTCCTCCCGTCGTACGCGGGGCCGGAAATGG
GGGTGTTGCCTCACACGGTGCAGGCATATGCATTGGATGATCCTAGTGCC
GGTGTGTACGGCAATAACAATTTTAGCTTTATGGCTGATTATATAAGGTG
GGAGGGGGGTCAAGGGGGGGCGAGGGGGGGGGAGGAGGGCTTTAGGCGGC
AGGTGCATTTCTATCCAGAGACGGCTTATTTCATAAATGTTGATATCGAT
GTGCCCCTTTTTTTGCCAGTGTATGCGGAAAGGAGGTTACATGATTTATT
GTTGTTGGCCGGGATGGAGGAAAAGGAAGGATTTCGGTTGGCAGGGACGT
GGAATTTCGACTCGGGGTGGGAGTGGGGGTATTGGTTGAATGATATCATC
ATGGCTGCTTCTATGTGGAATCCTACACAATTTCAAGAGGTGGAAGGAGA
GAAGGACTATTGCAGCGGCGGCAAAAGCAATAGCTGTGGTAGAAATGTTA
CGCTTAAAGCGTTCCAACGGGCTGTGGAGCAGGCGTTGCGCCAGCTGCCC
CCAACAGTGCGAGCTCAGATGGCCGAGTGGGTGGCCGACCTGGTGCATTT
TCAATATCATACTTTACTGTTGGGTGAGCTGGGCGACGAGGCTTCCGTTC
CATCCCCTAACCAAATCAAACTCTCCGGGATTGCCTATTTATGTGGGAAA
GATACGTGGGTGGAACTCCCCCGACGATTGGGACTGACTTTCACTCAGCC
TGACTACGTGGGATTTGATGAGCACAATCACCCAGATTACCCTCATGTTC
AACCTCTCCTTGCTTATATGCGAGCCCGCACGGCGACTTTGCATGCGAAA
GGTGCAGCGTTGGTAGCTGCTCTTGCAGAAAGTTTGGACAAGCTCTCGCC
GCACCTGCTGGAGCACCTACAGGAAATGCGGGATGGTATTCACTTGCAGG
CGTTGCGAGCGCATCACATTGCCCTACTCTACGAGGCCACTTCGCCCGCT
TCCATGGCAATAGACTCCAGTCAAGAAAGAAAAGAACAACGCCAGCTTCT
CTTGGCAGAAGGTCGGGCGGTGCTGGAGAAGGCTACGGATGTGGTGCGGG
ATCGCGAAAAGCAGTACCACGCCCCGATGGGTCGCATTGCGGGGTGGCGC
GAGAACCCGACAGTCTATCATTGGGATTATCTATGGAGTGTCAAGAGCTT
ATACTTTTGGTGGAGGGATCAAGGAAGGGCAGAGGGAGTCAGCCTAGCCT
CACGTTGGTCATTTTGTTATTTGAATCGGATGGATCCATCTGAGGTGGCT
GTGGGGATGGGCAAGAATTTTCTGAGGGCGATTGGGACGTATTTGCCGCA
TGTCTTGCCTTGGAGCGAGACGGTGACTGATTGTCTGGCGCCTCCGTCGG
AAGAGTTTGTATTTCCGCGGGATTTGTAG

Synonyms

Publications