jgi.p|Nanoce1779_2|572099, mRNA_1442 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572099
Unique NamemRNA_1442
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_1:557920..558495 +

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Properties
Property NameValue
TranscriptId572185
TrackFilteredModels2
ProteinId572099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:557920..558495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572099gene_1442Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572099mRNA_1442-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1442CDS_1442Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1442 ID=mRNA_1442|Name=jgi.p|Nanoce1779_2|572099|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAGACGTTGCTCGC
GGTCACGGCACCTTTGTCTTTCTCCATTATGACGACAGGGGCTCCGACAA
CCGGCAGGCCTTGTTTCTTCGTCCTTTTTGCTTCCTTTATATTATTAATA
ACCGAAAATTCCTCCTTGGAAGTAAACGCGCCATCCCGAATACTTAAGCT
ACCTGTTGTGGCGGTTTCTGCTGCTGCAGCTGCTACTAACCGGGCTGCCT
CCTTCTCACTCTTGGTGGGCCGAATTGGGCGCTCCTTGCCCTTCCGTGTC
TTGCGTCTTCTCTCTGACTGTACGATTGACCCAGGGAGCGGCTCCACAGG
CGCGAATTTGGCCAACGCGGTCTCGGAAAAGAGGGAGGCATTGGCGCTGT
TGACGGTGGATGTGCTCGCGGGGGTGGTCGTGCTAGGCTCCTTATCAGGC
TTCTTCCGCTTCTTGCTGCTCGCCGCCAAAACCGTGGCTGGCTTGACTTG
GACCTCAGCGGTATCCTGGAGAAAGGACGATATCGAGCCCGGTGTGTAGG
ACGTGAACGTCATGGCTTTTTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|572099

>mRNA_1442-protein ID=mRNA_1442-protein|Name=jgi.p|Nanoce1779_2|572099|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MTTGAPTTGRPCFFVLFASFILLITENSSLEVNAPSRILKLPVVAVSAAA
AATNRAASFSLLVGRIGRSLPFRVLRLLSDCTIDPGSGSTGANLANAVSE
KREALALLTVDVLAGVVVLGSLSGFFRFLLLAAKTVAGLTWTSAVSWRKD
DIEPGV*
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mRNA from alignment at scaffold_1:557920..558495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1442 ID=mRNA_1442|Name=jgi.p|Nanoce1779_2|572099|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at scaffold_1:557920..558495+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAGACGTTGCTCGC
GGTCACGGCACCTTTGTCTTTCTCCATTATGACGACAGGGGCTCCGACAA
CCGGCAGGCCTTGTTTCTTCGTCCTTTTTGCTTCCTTTATATTATTAATA
ACCGAAAATTCCTCCTTGGAAGTAAACGCGCCATCCCGAATACTTAAGCT
ACCTGTTGTGGCGGTTTCTGCTGCTGCAGCTGCTACTAACCGGGCTGCCT
CCTTCTCACTCTTGGTGGGCCGAATTGGGCGCTCCTTGCCCTTCCGTGTC
TTGCGTCTTCTCTCTGACTGTACGATTGACCCAGGGAGCGGCTCCACAGG
CGCGAATTTGGCCAACGCGGTCTCGGAAAAGAGGGAGGCATTGGCGCTGT
TGACGGTGGATGTGCTCGCGGGGGTGGTCGTGCTAGGCTCCTTATCAGGC
TTCTTCCGCTTCTTGCTGCTCGCCGCCAAAACCGTGGCTGGCTTGACTTG
GACCTCAGCGGTATCCTGGAGAAAGGACGATATCGAGCCCGGTGTGTAGG
ACGTGAACGTCATGGCTTTTTGCTGT
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Coding sequence (CDS) from alignment at scaffold_1:557920..558495+

>mRNA_1442 ID=mRNA_1442|Name=jgi.p|Nanoce1779_2|572099|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_1:557920..558495+ (Nannochloropsis oceanica)
ATGACGACAGGGGCTCCGACAACCGGCAGGCCTTGTTTCTTCGTCCTTTT
TGCTTCCTTTATATTATTAATAACCGAAAATTCCTCCTTGGAAGTAAACG
CGCCATCCCGAATACTTAAGCTACCTGTTGTGGCGGTTTCTGCTGCTGCA
GCTGCTACTAACCGGGCTGCCTCCTTCTCACTCTTGGTGGGCCGAATTGG
GCGCTCCTTGCCCTTCCGTGTCTTGCGTCTTCTCTCTGACTGTACGATTG
ACCCAGGGAGCGGCTCCACAGGCGCGAATTTGGCCAACGCGGTCTCGGAA
AAGAGGGAGGCATTGGCGCTGTTGACGGTGGATGTGCTCGCGGGGGTGGT
CGTGCTAGGCTCCTTATCAGGCTTCTTCCGCTTCTTGCTGCTCGCCGCCA
AAACCGTGGCTGGCTTGACTTGGACCTCAGCGGTATCCTGGAGAAAGGAC
GATATCGAGCCCGGTGTGTAG
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Synonyms
Publications