jgi.p|Nanoce1779_2|521635, mRNA_1441 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521635
Unique NamemRNA_1441
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1092
Alignment locationscaffold_1:556812..557996 -

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Properties
Property NameValue
TranscriptId521721
TrackFilteredModels2
ProteinId521635
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:556812..557996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521635gene_1441Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521635mRNA_1441-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1441CDS_1441Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1441 ID=mRNA_1441|Name=jgi.p|Nanoce1779_2|521635|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ATGGAGAAAGACAAAGGTGCCGTGACCGCGAGCAACGTCTCCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCCCCGGCCTCGACTTTGGCCAAGA
AGGATAAGAATGACAACAGAAAGCGGCAGACGGATGCGGATTGGAAGGAT
GAGGAAGGACCGCAGGAGGAGGTGGAGGAGGAGGTGGGCCAGGACGAAGC
CAAGGACCGCCGGACCATTTTTGTGGGCAACTTGCCGACGAGCATCAACA
AAAAGCGGGTGCAGAGCCTCTTTAAAGAGTACGGCGAGATTGAATCAGTC
CGCTTCCGTTCGATGGCCCTGGCCGGGGCCAAGGTTGACGACCACGGCAA
CCAGCAACTCGTCAAAAAGGTGTCAGCAAACAAACGTTTATTGAGCGACA
CGAAGGACACCTTTAATGCCTACGTTGTTTTCGTGAAGGAAAAAGCGGCC
GTGGCGGCTTTGGCAGTAAATAAGAAGGTCGTGGAAGAGAAGCACTTGAG
GGTGGATCGGGTGGGTAACGCCGCGACGCGAGATCCGAAGCGAAGTGTAT
TTTTGGGGAATCTTCCTTTTGATGCGAAGGAGGACGCGGTGCGTGCACAC
GTTGCAAAGGGTTTGGAGGGCGGGGAGAGAGATGTTGAGGGAGTCCGGTT
GGTAAGGGACTCTGAGACGCTGCAAGGGAAGGGTTTTGGGTTCATTCTTC
TCAAGGATCGAGCGTCGGTGGCAGCGGCATTGCGATTGAACGAGAGCACA
TTTTTGGGACGGAAGATTCGCGTGACTGTTTGCGGGAAGCGAACTAAGCA
GAGGAATGATGACGGCAAGCCCCGTGTCAAACCCAAGCACAATGCGAAGA
GGCGTTTGGAAGCCGCGGGCCCCAGGAAGAGGGGAGTTTCCTCCTCCTCA
TCGCCCTCCAAGAGCTCTTTGGGCGACAAAGCTAAGCCTTTTTTCGAAGG
CCGGCGTGTCTCGGCCGATGCGGGCGTGGTGAACCTGAAAAAGAGGGGAC
GCTCGGCGCCTAAAAAGAGTAGTGGGCGGTTTAAGAATGGCAAGAAGGGC
GTAGGAGCTGGAGCGGGAGGCAAGAAGAAGGGCAAAAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|521635

>mRNA_1441-protein ID=mRNA_1441-protein|Name=jgi.p|Nanoce1779_2|521635|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MEKDKGAVTASNVSAAAAAAAAAAAAPASTLAKKDKNDNRKRQTDADWKD
EEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESV
RFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAA
VAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAH
VAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNEST
FLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSS
SPSKSSLGDKAKPFFEGRRVSADAGVVNLKKRGRSAPKKSSGRFKNGKKG
VGAGAGGKKKGKK*
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mRNA from alignment at scaffold_1:556812..557996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1441 ID=mRNA_1441|Name=jgi.p|Nanoce1779_2|521635|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_1:556812..557996- (Nannochloropsis oceanica)
ATGGAGAAAGACAAAGGTGCCGTGACCGCGAGCAACGTCTCCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCCCCGGCCTCGACTTTGGCCAAGA
AGGATAAGAATGACAACAGAAAGCGGCAGACGGATGCGGATTGGAAGGAT
GAGGAAGGACCGCAGGAGGAGGTGGAGGAGGAGGTGGGCCAGGACGAAGC
CAAGGACCGCCGGACCATTTTTGTGGGCAACTTGCCGACGAGCATCAACA
AAAAGCGGGTGCAGAGCCTCTTTAAAGAGTACGGCGAGATTGGTAAGCGC
CGACTCTATTCATTTTATTGACTCTGCTTTCATTTATTCTGATGTTCGAT
GCAATATTTTTTTATATCTCACTACCCCTAAATAGAATCAGTCCGCTTCC
GTTCGATGGCCCTGGCCGGGGCCAAGGTTGACGACCACGGCAACCAGCAA
CTCGTCAAAAAGGTGTCAGCAAACAAACGTTTATTGAGCGACACGAAGGA
CACCTTTAATGCCTACGTTGTTTTCGTGAAGGAAAAAGCGGCCGTGGCGG
CTTTGGCAGTAAATAAGAAGGTCGTGGAAGAGAAGCACTTGAGGGTGGAT
CGGGTGGGTAACGCCGCGACGCGAGATCCGAAGCGAAGTGTATTTTTGGG
GAATCTTCCTTTTGATGCGAAGGAGGACGCGGTGCGTGCACACGTTGCAA
AGGGTTTGGAGGGCGGGGAGAGAGATGTTGAGGGAGTCCGGTTGGTAAGG
GACTCTGAGACGCTGCAAGGGAAGGGTTTTGGGTTCATTCTTCTCAAGGA
TCGAGCGTCGGTGGCAGCGGCATTGCGATTGAACGAGAGCACATTTTTGG
GACGGAAGATTCGCGTGACTGTTTGCGGGAAGCGAACTAAGCAGAGGAAT
GATGACGGCAAGCCCCGTGTCAAACCCAAGCACAATGCGAAGAGGCGTTT
GGAAGCCGCGGGCCCCAGGAAGAGGGGAGTTTCCTCCTCCTCATCGCCCT
CCAAGAGCTCTTTGGGCGACAAAGCTAAGCCTTTTTTCGAAGGCCGGCGT
GTCTCGGCCGATGCGGGCGTGGTGAACCTGAAAAAGAGGGGACGCTCGGC
GCCTAAAAAGAGTAGTGGGCGGTTTAAGAATGGCAAGAAGGGCGTAGGAG
CTGGAGCGGGAGGCAAGAAGAAGGGCAAAAAGTGA
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Coding sequence (CDS) from alignment at scaffold_1:556812..557996-

>mRNA_1441 ID=mRNA_1441|Name=jgi.p|Nanoce1779_2|521635|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_1:556812..557996- (Nannochloropsis oceanica)
AATCAGTCCGCTTCCGTTCGATGGCCCTGGCCGGGGCCAAGGTTGACGAC
CACGGCAACCAGCAACTCGTCAAAAAGGTGTCAGCAAACAAACGTTTATT
GAGCGACACGAAGGACACCTTTAATGCCTACGTTGTTTTCGTGAAGGAAA
AAGCGGCCGTGGCGGCTTTGGCAGTAAATAAGAAGGTCGTGGAAGAGAAG
CACTTGAGGGTGGATCGGGTGGGTAACGCCGCGACGCGAGATCCGAAGCG
AAGTGTATTTTTGGGGAATCTTCCTTTTGATGCGAAGGAGGACGCGGTGC
GTGCACACGTTGCAAAGGGTTTGGAGGGCGGGGAGAGAGATGTTGAGGGA
GTCCGGTTGGTAAGGGACTCTGAGACGCTGCAAGGGAAGGGTTTTGGGTT
CATTCTTCTCAAGGATCGAGCGTCGGTGGCAGCGGCATTGCGATTGAACG
AGAGCACATTTTTGGGACGGAAGATTCGCGTGACTGTTTGCGGGAAGCGA
ACTAAGCAGAGGAATGATGACGGCAAGCCCCGTGTCAAACCCAAGCACAA
TGCGAAGAGGCGTTTGGAAGCCGCGGGCCCCAGGAAGAGGGGAGTTTCCT
CCTCCTCATCGCCCTCCAAGAGCTCTTTGGGCGACAAAGCTAAGCCTTTT
TTCGAAGGCCGGCGTGTCTCGGCCGATGCGGGCGTGGTGAACCTGAAAAA
GAGGGGACGCTCGGCGCCTAAAAAGAGTAGTGGGCGGTTTAAGAATGGCA
AGAAGGGCGTAGGAGCTGGAGCGGGAGGCAAGAAGAAGGGCAAAAAGTGA
ATGGAGAAAGACAAAGGTGCCGTGACCGCGAGCAACGTCTCCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCCCCGGCCTCGACTTTGGCCAAGA
AGGATAAGAATGACAACAGAAAGCGGCAGACGGATGCGGATTGGAAGGAT
GAGGAAGGACCGCAGGAGGAGGTGGAGGAGGAGGTGGGCCAGGACGAAGC
CAAGGACCGCCGGACCATTTTTGTGGGCAACTTGCCGACGAGCATCAACA
AAAAGCGGGTGCAGAGCCTCTTTAAAGAGTACGGCGAGATTGAATCAGTC
CGCTTCCGTTCGATGGCCCTGGCCGGGGCCAAGGTTGACGACCACGGCAA
CCAGCAACTCGTCAAAAAGGTGTCAGCAAACAAACGTTTATTGAGCGACA
CGAAGGACACCTTTAATGCCTACGTTGTTTTCGTGAAGGAAAAAGCGGCC
GTGGCGGCTTTGGCAGTAAATAAGAAGGTCGTGGAAGAGAAGCACTTGAG
GGTGGATCGGGTGGGTAACGCCGCGACGCGAGATCCGAAGCGAAGTGTAT
TTTTGGGGAATCTTCCTTTTGATGCGAAGGAGGACGCGGTGCGTGCACAC
GTTGCAAAGGGTTTGGAGGGCGGGGAGAGAGATGTTGAGGGAGTCCGGTT
GGTAAGGGACTCTGAGACGCTGCAAGGGAAGGGTTTTGGGTTCATTCTTC
TCAAGGATCGAGCGTCGGTGGCAGCGGCATTGCGATTGAACGAGAGCACA
TTTTTGGGACGGAAGATTCGCGTGACTGTTTGCGGGAAGCGAACTAAGCA
GAGGAATGATGACGGCAAGCCCCGTGTCAAACCCAAGCACAATGCGAAGA
GGCGTTTGGAAGCCGCGGGCCCCAGGAAGAGGGGAGTTTCCTCCTCCTCA
TCGCCCTCCAAGAGCTCTTTGGGCGACAAAGCTAAGCCTTTTTTCGAAGG
CCGGCGTGTCTCGGCCGATGCGGGCGTGGTGAACCTGAAAAAGAGGGGAC
GCTCGGCGCCTAAAAAGAGTAGTGGGCGGTTTAAGAATGGCAAGAAGGGC
GTAGGAGCTGGAGCGGGAGGCAAGAAGAAGGGCAAAAAGTGAATGGAGAA
AGACAAAGGTGCCGTGACCGCGAGCAACGTCTCCGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCCCCGGCCTCGACTTTGGCCAAGAAGGATAAG
AATGACAACAGAAAGCGGCAGACGGATGCGGATTGGAAGGATGAGGAAGG
ACCGCAGGAGGAGGTGGAGGAGGAGGTGGGCCAGGACGAAGCCAAGGACC
GCCGGACCATTTTTGTGGGCAACTTGCCGACGAGCATCAACAAAAAGCGG
GTGCAGAGCCTCTTTAAAGAGTACGGCGAGATTG
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Synonyms
Publications