jgi.p|Nanoce1779_2|572093, mRNA_1439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572093
Unique NamemRNA_1439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1845
Alignment locationscaffold_1:554633..556729 -

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Properties
Property NameValue
TranscriptId572179
TrackFilteredModels2
ProteinId572093
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:554633..556729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572093gene_1439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572093mRNA_1439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1439CDS_1439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1439 ID=mRNA_1439|Name=jgi.p|Nanoce1779_2|572093|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp
GTCTGTTGTTCCTTTTGTTAAGCGGGGCCTACGGGGGGTGGGGGTGGGGG
GAAGGAGGGAGGAGGAGGCCCGGGATGTGAATGCTGCCAAGAACCACTAG
CTGAAAGCACTCGTCGGCGTAAGGGATAACTAATCCCAAGACGGGTCGGT
CATATAGCACATGGTAGCATTTACATTCCGGTCTTCATCGAGCCCACAAC
GTCCACACTTGGAAAGACTCTGCATACCCCTAACCCCTCGTTGACCAGAC
CGCAAGAGCTGCACGTTGTACTCGTGCCGTGCTCGTCCAGATCCAAGACG
ATCTTCCTACAACCCTCGGCCTTCATCCTGATACGCGGTTGAAGAGGCCG
TTTCGTTGGAAACGCATCGTCTCCTTGGTCCCTGCCGTCAGAACACTCGT
TCTCCCCGACATTCTTCCCACACCCACGCGTCGAAAGAGAAAGGCGATCT
TCTTGAAATGAAGATCGCTTACCATGCTTCTCGCAATGGTGCGGTACCCA
GCCTCGGTAACTTACTCAATCTTCCGTTGCAGACTCCTACTCTTTTCCCG
ATTTCCCCCCTTCTCCTCTCGCAACGCTTCTCTTTCCAAAGCTGCGATTC
TTCCCCGGATGCCATCGATGTTCTTCTTCATGGCACACGCACGCTCTATC
ATCACACCAGGAGCCAAATGAATCACTGGTCATGCGCTTGGACTTGGACT
TGTACTTGATATGAAATGCAGGGAATGGCCTCCCCTCCCCCTCCCCCTCC
TCCTCCTTTCCCTCCCCCTTCCCATTCCTTTCCCCCTCGCCATTGCTTTT
TATTTTTCTTGGGGTTCCACATGTCGCTGTTATGCTTCTTCGTTTTGTTC
TCCTTGTTCTTCTTGCGGTCAACCTGCCCGCTTGTCCTCTTCCACCTCCC
TGATTTCGTCGCCTGTCGCAGTGTCCGGGCCTCCACTCCTACTTCGGAAC
TCTTGAATGCAGTCAACAGGTGGTGCACGGCGCGCAAGCGAAGAGCCGAT
GGAGTCTCATTCATTTTCAACTCCTTGGGCCCGTCCTTCTCTCGGGCAAT
CACGACCAGTTTTTTAATCTGGAGATCCGGCTTGGCCTTTTTATCATATT
GATAAGATGAAGAGCTGAGTTCCAGGTGTCCCGGGCAGCCTTCATCCACA
CAAGCATCTTCCTGGCCTGTTCAACCGTCGGATGTAGGCGTATCATCTCG
ACGCGCCAGATATCTTGGCTGTTCTCTTGCAAGAAATTTCTACTGCAATG
TCAGCTCAGCGCAAAAAGAGTGCAAAAACATCGCGCAAGTCGAGCCCGAA
CCCCACAAACGGGAACAAAGCCTGAAGCGGGACGCGGACGAAGAGAGTGT
CGCCTGGCCTCAGTACATTAATAGTTGTCGGCGTCTTGCCAGGCAGGCGC
CCGTGCAACTTTCGCTACTGCGCGACAATCCAGGCCTCTGTCATATTGGA
AAGCAGCCTCTTATCGTTAAAGAGCACAGCCGTATCCCGTGCGCCAAATA
CCAAACGTTCCGGCATGCGTTCGTCCTCGTCCTTGTCGGCCTCAGTAATT
TGTCCCTGCCGCCGCCGTTGCGTCTCTTCTTGCTTCTTCTGGCGCTTGAG
CTGCATAATTATGACGTCAACCTCCTCTTCATGCTCGACCCCCTCCATTC
CCACCGACTCTTCCCGGTCCAGATAGAACAAGGGCGATGGGTCCTCCTCA
TCTTGATGGGTCCTCCTCATCTTGAGCAGGCACGACAGCATCACCGTCGT
TCATCTCCTGCCGCCGCTTCTCTGCCTTGACACCTCCCTCTCCAGTGCTA
CGCTGGCCGGACCTGCGGGCGCCTGACATGGAAGAACTTTTTCTG
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protein sequence of jgi.p|Nanoce1779_2|572093

>mRNA_1439-protein ID=mRNA_1439-protein|Name=jgi.p|Nanoce1779_2|572093|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MQGMASPPPPPPPPFPPPSHSFPPRHCFLFFLGFHMSLLCFFVLFSLFFL
RSTCPLVLFHLPDFVACRSVRASTPTSELLNAVNRWCTARKRRADGVSFI
FNSLGPSFSRAITTSFLIWRSGLAFLSY*
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mRNA from alignment at scaffold_1:554633..556729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1439 ID=mRNA_1439|Name=jgi.p|Nanoce1779_2|572093|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp|location=Sequence derived from alignment at scaffold_1:554633..556729- (Nannochloropsis oceanica)
GTCTGTTGTTCCTTTTGTTAAGCGGGGCCTACGGGGGGTGGGGGTGGGGG
GAAGGAGGGAGGAGGAGGCCCGGGATGTGAATGCTGCCAAGAACCACTAG
CTGAAAGCACTCGTCGGCGTAAGGGATAACTAATCCCAAGACGGGTCGGT
CATATAGCACATGGTAGCATTTACATTCCGGTCTTCATCGAGCCCACAAC
GTCCACACTTGGAAAGACTCTGCATACCCCTAACCCCTCGTTGACCAGAC
CGCAAGAGCTGCACGTTGTACTCGTGCCGTGCTCGTCCAGATCCAAGACG
ATCTTCCTACAACCCTCGGCCTTCATCCTGATACGCGGTTGAAGAGGCCG
TTTCGTTGGAAACGCATCGTCTCCTTGGTCCCTGCCGTCAGAACACTCGT
TCTCCCCGACATTCTTCCCACACCCACGCGTCGAAAGAGAAAGGCGATCT
TCTTGAAATGAAGATCGCTTACCATGCTTCTCGCAATGGTGCGGTACCCA
GCCTCGGTAACTTACTCAATCTTCCGTTGCAGACTCCTACTCTTTTCCCG
ATTTCCCCCCTTCTCCTCTCGCAACGCTTCTCTTTCCAAAGCTGCGATTC
TTCCCCGGATGCCATCGATGTTCTTCTTCATGGCACACGCACGCTCTATC
ATCACACCAGGAGCCAAATGAATCACTGGTCATGCGCTTGGACTTGGACT
TGTACTTGATATGAAATGCAGGGAATGGCCTCCCCTCCCCCTCCCCCTCC
TCCTCCTTTCCCTCCCCCTTCCCATTCCTTTCCCCCTCGCCATTGCTTTT
TATTTTTCTTGGGGTTCCACATGTCGCTGTTATGCTTCTTCGTTTTGTTC
TCCTTGTTCTTCTTGCGGTCAACCTGCCCGCTTGTCCTCTTCCACCTCCC
TGATTTCGTCGCCTGTCGCAGTGTCCGGGCCTCCACTCCTACTTCGGAAC
TCTTGAATGCAGTCAACAGGTGGTGCACGGCGCGCAAGCGAAGAGCCGAT
GGAGTCTCATTCATTTTCAACTCCTTGGGCCCGTCCTTCTCTCGGGCAAT
CACGACCAGTTTTTTAATCTGGAGATCCGGCTTGGCCTTTTTATCATATT
GATAAGATGAAGAGCTGAGTTCCAGGTGTCCCGGGCAGCCTTCATCCACA
CAAGCATCTTCCTGGCCTGTTCAACCGTCGGATGTAGGCGTATCATCTCG
ACGCGCCAGATATCTTGGCTGTTCTCTGTGTTTGTGTATTGGGTGAGAAG
GCAGGGAAGAGGAGATAAGATGAAAACATCTTCCTCCTACATCTGCTTGG
AGGGGTGCCTCCCTTCCTATACGAGCACCTCCTCGCAATCCTTCTATACC
TTGCAAGAAATTTCTACTGCAATGTCAGCTCAGCGCAAAAAGAGTGCAAA
AACATCGCGCAAGTCGAGCCCGAACCCCACAAACGGGAACAAAGCCTACG
GATGATGGAATGAGTGGGTGGTGGAAGGAAATGTCGGCGAAGCTGTTGTC
GCCCAAGAATACCGAGAGTGAGAAGAAAAGGAGGAAAATCGAATCGCTGT
CATGGGCAAGGGCTGACTTATACCTGAAGCGGGACGCGGACGAAGAGAGT
GTCGCCTGGCCTCAGTACATTAATAGTTGTCGGCGTCTTGCCAGGCAGGC
GCCCGTGCAACTTTCGCTACTGCGCGACAATCCAGGCCTCTGTCATATTG
GAAAGCAGCCTCTTATCGTTAAAGAGCACAGCCGTATCCCGTGCGCCAAA
TACCAAACGTTCCGGCATGCGTTCGTCCTCGTCCTTGTCGGCCTCAGTAA
TTTGTCCCTGCCGCCGCCGTTGCGTCTCTTCTTGCTTCTTCTGGCGCTTG
AGCTGCATAATTATGACGTCAACCTCCTCTTCATGCTCGACCCCCTCCAT
TCCCACCGACTCTTCCCGGTCCAGATAGAACAAGGGCGATGGGTCCTCCT
CATCTTGATGGGTCCTCCTCATCTTGAGCAGGCACGACAGCATCACCGTC
GTTCATCTCCTGCCGCCGCTTCTCTGCCTTGACACCTCCCTCTCCAGTGC
TACGCTGGCCGGACCTGCGGGCGCCTGACATGGAAGAACTTTTTCTG
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Coding sequence (CDS) from alignment at scaffold_1:554633..556729-

>mRNA_1439 ID=mRNA_1439|Name=jgi.p|Nanoce1779_2|572093|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_1:554633..556729- (Nannochloropsis oceanica)
ATGCAGGGAATGGCCTCCCCTCCCCCTCCCCCTCCTCCTCCTTTCCCTCC
CCCTTCCCATTCCTTTCCCCCTCGCCATTGCTTTTTATTTTTCTTGGGGT
TCCACATGTCGCTGTTATGCTTCTTCGTTTTGTTCTCCTTGTTCTTCTTG
CGGTCAACCTGCCCGCTTGTCCTCTTCCACCTCCCTGATTTCGTCGCCTG
TCGCAGTGTCCGGGCCTCCACTCCTACTTCGGAACTCTTGAATGCAGTCA
ACAGGTGGTGCACGGCGCGCAAGCGAAGAGCCGATGGAGTCTCATTCATT
TTCAACTCCTTGGGCCCGTCCTTCTCTCGGGCAATCACGACCAGTTTTTT
AATCTGGAGATCCGGCTTGGCCTTTTTATCATATTGA
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Synonyms
Publications