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Properties
| Property Name | Value |
|---|
| TranscriptId | 572169 |
| Track | FilteredModels2 |
| ProteinId | 572083 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:545267..547577 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1436 ID=mRNA_1436|Name=jgi.p|Nanoce1779_2|572083|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp
AGGTTTCGACCCCACACGACACGACCATGATGATGCTATCGGCTCGTCAG
GCGCTTCGTACCGCTGGCCGCACTTTCCGCGTGCCTGTAGCGGTGGCTGC
TCGCTCCGTGGTCACCAACTCGAAGGCCGGCACCACGGCCGCATCTGCTT
GGAAGCGAGGGCTTATCGTCACGGCAGGTGTGACCTTCGGGGTGGTTGCG
CTAAATAGCGAGACCGCTCATGCTCTTTCCGGCAAGGTCGATTGGGAGGG
CTCCGTCCGTAAGGATATTGTCAAGTTGATTGAGGACGAAGAGGAACGTC
GTGGAGACGGGACTGGCATTGGTCCCACACTGATTCGACTGGCGTGGCAT
GCCTCAGGGACGTATGACTGCAAGGCGAAGAACGGCGGAAGCAATGGCGC
TACCATGCGTTTCTGCCCGGAGGGCAACTGGGGGGCCAACCAGGGACTCT
GTATCGCCAGGCGCATGCTCGAGCCCATCCAAGCCAAGTACGGCTGCAGC
TTCGCCGATCTGTGGACATTTGCCGGCAAAGTGGCTGTGGAAGAAGCGGG
TGGGCCTGTGATCCCCTGGAGGGCGGGCCGCTCAGATGCGGACGACGGGA
GCAAAATCGTCCCTGATGGCCGTTTGCCTGACGCGACGCAGGGGGCTGCA
CACCTCCGGGACGTCTTTTACCGGATGGGCTTTAACGACAAGGATATTGT
AGCTTTGAGTGGGGCGCACTCAATGGGGTTCTGTCACCTGGATAATTCGG
GCTTTGTGGGCCCCTGGTCATTTGCGCCCAACTCGTTCAGCAATGAGTAC
TTCCGATTGTTGGTGGATGAGAAGTGGGTTCCGAAAACAACGCACAAGGG
GAAGCCGTGGAAGGGCCCCCTGCAGTACCAGGACTCGACGGGAAAGCTCA
TGATGCTGCCGACGGACTTGGCGCTGATGGAAGACCCTGAATTCAAGAAG
CACGTGATAGCATACAAGGAGGACGAGGAGTTGTTTTTCAAGGACTTTGC
GGCGGCCTTTGGGAAGTTGATGGAGCTTGGATGTCCCTTTCCTAACGCAG
GGGGAGCGGCGGGTGGAGCGGGGATTATTGGTGAGGTGAAACGGATGTTC
GGTCTTACGGCTTAGGTGTATGTATTTTGCGAAAGAGGCGAACAAGCAGC
AGCAGTAGCAGCAGCAGCACGAACAGAAAACTGAATAGGAGGAGAGATTG
ATGGGTGGACTGAACGACAGAAGGACCATATTGGAGAATCACAAGAAGGA
TAAGGAGAAGGAAAAGGAGGAAAACTTGAAGAAGGTAAAGAAATAGCAGT
AGGAGAGGAAGATAGAACAAAAAAGTGCACCCATATATACATCATTTGGG
CAGGGGGGCGCGGGGGATTGCAGAAAAGAAATGAGAGGATATGTCCTGCG
CCTCCCGCGCCGACGTCTATTGGGTGGAAGCTATTCTTGTCTCTGCACAG
AGGTGCTAGGCGTTGAGAGAAGAAATGAGAGAAACTAACAAGCGAAGACA
GAGAGGTTGCTCCATCCTACCTGAACAAAACATGATCAGACAAACAACCT
CAATGAGAAAGAAATAAGATGAAGAAGGATATATAGAAGTAAGTTTCTAC
ACAGTTTG back to topprotein sequence of jgi.p|Nanoce1779_2|572083 >mRNA_1436-protein ID=mRNA_1436-protein|Name=jgi.p|Nanoce1779_2|572083|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MMMLSARQALRTAGRTFRVPVAVAARSVVTNSKAGTTAASAWKRGLIVTA
GVTFGVVALNSETAHALSGKVDWEGSVRKDIVKLIEDEEERRGDGTGIGP
TLIRLAWHASGTYDCKAKNGGSNGATMRFCPEGNWGANQGLCIARRMLEP
IQAKYGCSFADLWTFAGKVAVEEAGGPVIPWRAGRSDADDGSKIVPDGRL
PDATQGAAHLRDVFYRMGFNDKDIVALSGAHSMGFCHLDNSGFVGPWSFA
PNSFSNEYFRLLVDEKWVPKTTHKGKPWKGPLQYQDSTGKLMMLPTDLAL
MEDPEFKKHVIAYKEDEELFFKDFAAAFGKLMELGCPFPNAGGAAGGAGI
IGEVKRMFGLTA* back to topmRNA from alignment at scaffold_1:545267..547577+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1436 ID=mRNA_1436|Name=jgi.p|Nanoce1779_2|572083|organism=Nannochloropsis oceanica|type=mRNA|length=2311bp|location=Sequence derived from alignment at scaffold_1:545267..547577+ (Nannochloropsis oceanica)
AGGTTTCGACCCCACACGACACGACCATGATGATGCTATCGGCTCGTCAG
GCGCTTCGTACCGCTGGCCGCACTTTCCGCGTGCCTGTAGCGGTGGCTGC
TCGCTCCGTGGTCACCAACTCGAAGGTATGTGTTACGTGTGTGTTCATGT
TCATGTCCCTGTCGTGTGTAGGAAGGGGGGGGGAGGGGGGTACAAGTCTT
GGGTACAAATTGATCAAGTACGCGGGTTGGAGCATCGCGTATGCGTGACA
TCGTCTGTGCTCCTTTGGCCGGCCTACGATGACAAGCTCCTACGCATTTG
CCTCCCGTCGTCTCTCTATCTCTATATGAACTTTGACTTTCAAGACCAAC
TCTGAGGTTCTTCTATTTTCGCTTTTTCCTGCACAGGCCGGCACCACGGC
CGCATCTGCTTGGAAGCGAGGGCTTATCGTCACGGCAGGTGTGACCTTCG
GGGTGGTTGCGCTAAATAGCGAGACCGCTCATGCTCTTTCCGGCAAGGTC
GATTGGGAGGGCTCCGTCCGTAAGGATATTGTCAAGTTGATTGAGGACGA
AGAGGAACGTCGTGGAGACGGGACTGGCATTGGTCCCACACTGATTCGAC
TGGCGTGGCATGCCTCAGGGACGTATGACTGCAAGGCGAAGAACGGCGGA
AGCAATGGCGCTACCATGCGTTTCTGCCCGGAGGGCAACTGGGGGGCCAA
CCAGGGACTCTGTATCGCCAGGCGCATGCTCGAGCCCATCCAAGCCAAGT
ACGGCTGCAGCTTCGCCGATCTGTGGACATTTGCCGGCAAAGTGGTAGGT
GTATTAATTCTCAATCATTCATGATTGATGATTCATCATTATATTTTTAC
TTTACTATTTTTTGTTCCCTATTCTTCATGGTGATCAATTTTTAATTTTA
CTATTTTCATTGATTGATTGTACTTTATTCGTTAATTTTCTCTCGCGAAA
ATGACCTCTTCTCCCGTATGTGTGCTTAAAACAGGCTGTGGAAGAAGCGG
GTGGGCCTGTGATCCCCTGGAGGGCGGGCCGCTCAGATGCGGACGACGGG
AGCAAAATCGTCCCTGATGGCCGTTTGCCTGACGCGACGCAGGGGGCTGC
ACACCTCCGGGACGTCTTTTACCGGATGGGCTTTAACGACAAGGATATTG
TAGCTTTGAGTGGGGCGCACTCAATGGGTAGGTATGACAGGATATGAGGT
GTTGATCCTCTTTCCGTTCTCTGTTCATTACATGCTTACTATGCAGATTT
ATATATATATATATATATATATATATATATATGTATGCTGCGTGTGACTT
CACAATTCCCTCCCCATGGCGCATTGAATCTTCAGTTTCCAATGTTGCGT
TCCTAGTGGTATTTAAGCTTCTAGCGGGAATCATCAATCTCTGTCTTAAC
CTTATTTTTTCATTTAAATTATTTTCAAGGGTTCTGTCACCTGGATAATT
CGGGCTTTGTGGGCCCCTGGTCATTTGCGCCCAACTCGTTCAGCAATGAG
TACTTCCGATTGTTGGTGGATGAGAAGTGGGTTCCGAAAACAACGCACAA
GGGGAAGCCGTGGAAGGGCCCCCTGCAGTACCAGGACTCGACGGGAAAGC
TCATGATGCTGCCGACGGACTTGGCGCTGATGGAAGACCCTGAATTCAAG
AAGCACGTGATAGCATACAAGGAGGACGAGGAGTTGTTTTTCAAGGACTT
TGCGGCGGCCTTTGGGAAGTTGATGGAGCTTGGATGTCCCTTTCCTAACG
CAGGGGGAGCGGCGGGTGGAGCGGGGATTATTGGTGAGGTGAAACGGATG
TTCGGTCTTACGGCTTAGGTGTATGTATTTTGCGAAAGAGGCGAACAAGC
AGCAGCAGTAGCAGCAGCAGCACGAACAGAAAACTGAATAGGAGGAGAGA
TTGATGGGTGGACTGAACGACAGAAGGACCATATTGGAGAATCACAAGAA
GGATAAGGAGAAGGAAAAGGAGGAAAACTTGAAGAAGGTAAAGAAATAGC
AGTAGGAGAGGAAGATAGAACAAAAAAGTGCACCCATATATACATCATTT
GGGCAGGGGGGCGCGGGGGATTGCAGAAAAGAAATGAGAGGATATGTCCT
GCGCCTCCCGCGCCGACGTCTATTGGGTGGAAGCTATTCTTGTCTCTGCA
CAGAGGTGCTAGGCGTTGAGAGAAGAAATGAGAGAAACTAACAAGCGAAG
ACAGAGAGGTTGCTCCATCCTACCTGAACAAAACATGATCAGACAAACAA
CCTCAATGAGAAAGAAATAAGATGAAGAAGGATATATAGAAGTAAGTTTC
TACACAGTTTG back to topCoding sequence (CDS) from alignment at scaffold_1:545267..547577+ >mRNA_1436 ID=mRNA_1436|Name=jgi.p|Nanoce1779_2|572083|organism=Nannochloropsis oceanica|type=CDS|length=4356bp|location=Sequence derived from alignment at scaffold_1:545267..547577+ (Nannochloropsis oceanica)
ATGATGATGCTATCGGCTCGTCAGGCGCTTCGTACCGCTGGCCGCACTTT
CCGCGTGCCTGTAGCGGTGGCTGCTCGCTCCGTGGTCACCAACTCGAAGG
CCGGCACCACGGCCGCATCTGCTTGGAAGCGAGGGCTTATCGTCACGGCA
GGTGTGACCTTCGGGGTGGTTGCGCTAAATAGCGAGACCGCTCATGCTCT
TTCCGGCAAGGTCGATTGGGAGGGCTCCGTCCGTAAGGATATTGTCAAGT
TGATTGAGGACGAAGAGGAACGTCGTGGAGACGGGACTGGCATTGGTCCC
ACACTGATTCGACTGGCGTGGCATGCCTCAGGGACGTATGACTGCAAGGC
GAAGAACGGCGGAAGCAATGGCGCTACCATGCGTTTCTGCCCGGAGGGCA
ACTGGGGGGCCAACCAGGGACTCTGTATCGCCAGGCGCATGCTCGAGCCC
ATCCAAGCCAAGTACGGCTGCAGCTTCGCCGATCTGTGGACATTTGCCGG
CAAAGTGGCTGTGGAAGAAGCGGGTGGGCCTGTGATCCCCTGGAGGGCGG
GCCGCTCAGATGCGGACGACGGGAGCAAAATCGTCCCTGATGGCCGTTTG
CCTGACGCGACGCAGGGGGCTGCACACCTCCGGGACGTCTTTTACCGGAT
GGGCTTTAACGACAAGGATATTGTAGCTTTGAGTGGGGCGCACTCAATGG
GGTTCTGTCACCTGGATAATTCGGGCTTTGTGGGCCCCTGGTCATTTGCG
CCCAACTCGTTCAGCAATGAGTACTTCCGATTGTTGGTGGATGAGAAGTG
GGTTCCGAAAACAACGCACAAGGGGAAGCCGTGGAAGGGCCCCCTGCAGT
ACCAGGACTCGACGGGAAAGCTCATGATGCTGCCGACGGACTTGGCGCTG
ATGGAAGACCCTGAATTCAAGAAGCACGTGATAGCATACAAGGAGGACGA
GGAGTTGTTTTTCAAGGACTTTGCGGCGGCCTTTGGGAAGTTGATGGAGC
TTGGATGTCCCTTTCCTAACGCAGGGGGAGCGGCGGGTGGAGCGGGGATT
ATTGGTGAGGTGAAACGGATGTTCGGTCTTACGGCTTAGATGATGATGCT
ATCGGCTCGTCAGGCGCTTCGTACCGCTGGCCGCACTTTCCGCGTGCCTG
TAGCGGTGGCTGCTCGCTCCGTGGTCACCAACTCGAAGGCCGGCACCACG
GCCGCATCTGCTTGGAAGCGAGGGCTTATCGTCACGGCAGGTGTGACCTT
CGGGGTGGTTGCGCTAAATAGCGAGACCGCTCATGCTCTTTCCGGCAAGG
TCGATTGGGAGGGCTCCGTCCGTAAGGATATTGTCAAGTTGATTGAGGAC
GAAGAGGAACGTCGTGGAGACGGGACTGGCATTGGTCCCACACTGATTCG
ACTGGCGTGGCATGCCTCAGGGACGTATGACTGCAAGGCGAAGAACGGCG
GAAGCAATGGCGCTACCATGCGTTTCTGCCCGGAGGGCAACTGGGGGGCC
AACCAGGGACTCTGTATCGCCAGGCGCATGCTCGAGCCCATCCAAGCCAA
GTACGGCTGCAGCTTCGCCGATCTGTGGACATTTGCCGGCAAAGTGGCTG
TGGAAGAAGCGGGTGGGCCTGTGATCCCCTGGAGGGCGGGCCGCTCAGAT
GCGGACGACGGGAGCAAAATCGTCCCTGATGGCCGTTTGCCTGACGCGAC
GCAGGGGGCTGCACACCTCCGGGACGTCTTTTACCGGATGGGCTTTAACG
ACAAGGATATTGTAGCTTTGAGTGGGGCGCACTCAATGGGGTTCTGTCAC
CTGGATAATTCGGGCTTTGTGGGCCCCTGGTCATTTGCGCCCAACTCGTT
CAGCAATGAGTACTTCCGATTGTTGGTGGATGAGAAGTGGGTTCCGAAAA
CAACGCACAAGGGGAAGCCGTGGAAGGGCCCCCTGCAGTACCAGGACTCG
ACGGGAAAGCTCATGATGCTGCCGACGGACTTGGCGCTGATGGAAGACCC
TGAATTCAAGAAGCACGTGATAGCATACAAGGAGGACGAGGAGTTGTTTT
TCAAGGACTTTGCGGCGGCCTTTGGGAAGTTGATGGAGCTTGGATGTCCC
TTTCCTAACGCAGGGGGAGCGGCGGGTGGAGCGGGGATTATTGGTGAGGT
GAAACGGATGTTCGGTCTTACGGCTTAGATGATGATGCTATCGGCTCGTC
AGGCGCTTCGTACCGCTGGCCGCACTTTCCGCGTGCCTGTAGCGGTGGCT
GCTCGCTCCGTGGTCACCAACTCGAAGGCCGGCACCACGGCCGCATCTGC
TTGGAAGCGAGGGCTTATCGTCACGGCAGGTGTGACCTTCGGGGTGGTTG
CGCTAAATAGCGAGACCGCTCATGCTCTTTCCGGCAAGGTCGATTGGGAG
GGCTCCGTCCGTAAGGATATTGTCAAGTTGATTGAGGACGAAGAGGAACG
TCGTGGAGACGGGACTGGCATTGGTCCCACACTGATTCGACTGGCGTGGC
ATGCCTCAGGGACGTATGACTGCAAGGCGAAGAACGGCGGAAGCAATGGC
GCTACCATGCGTTTCTGCCCGGAGGGCAACTGGGGGGCCAACCAGGGACT
CTGTATCGCCAGGCGCATGCTCGAGCCCATCCAAGCCAAGTACGGCTGCA
GCTTCGCCGATCTGTGGACATTTGCCGGCAAAGTGGCTGTGGAAGAAGCG
GGTGGGCCTGTGATCCCCTGGAGGGCGGGCCGCTCAGATGCGGACGACGG
GAGCAAAATCGTCCCTGATGGCCGTTTGCCTGACGCGACGCAGGGGGCTG
CACACCTCCGGGACGTCTTTTACCGGATGGGCTTTAACGACAAGGATATT
GTAGCTTTGAGTGGGGCGCACTCAATGGGGTTCTGTCACCTGGATAATTC
GGGCTTTGTGGGCCCCTGGTCATTTGCGCCCAACTCGTTCAGCAATGAGT
ACTTCCGATTGTTGGTGGATGAGAAGTGGGTTCCGAAAACAACGCACAAG
GGGAAGCCGTGGAAGGGCCCCCTGCAGTACCAGGACTCGACGGGAAAGCT
CATGATGCTGCCGACGGACTTGGCGCTGATGGAAGACCCTGAATTCAAGA
AGCACGTGATAGCATACAAGGAGGACGAGGAGTTGTTTTTCAAGGACTTT
GCGGCGGCCTTTGGGAAGTTGATGGAGCTTGGATGTCCCTTTCCTAACGC
AGGGGGAGCGGCGGGTGGAGCGGGGATTATTGGTGAGGTGAAACGGATGT
TCGGTCTTACGGCTTAGATGATGATGCTATCGGCTCGTCAGGCGCTTCGT
ACCGCTGGCCGCACTTTCCGCGTGCCTGTAGCGGTGGCTGCTCGCTCCGT
GGTCACCAACTCGAAGGCCGGCACCACGGCCGCATCTGCTTGGAAGCGAG
GGCTTATCGTCACGGCAGGTGTGACCTTCGGGGTGGTTGCGCTAAATAGC
GAGACCGCTCATGCTCTTTCCGGCAAGGTCGATTGGGAGGGCTCCGTCCG
TAAGGATATTGTCAAGTTGATTGAGGACGAAGAGGAACGTCGTGGAGACG
GGACTGGCATTGGTCCCACACTGATTCGACTGGCGTGGCATGCCTCAGGG
ACGTATGACTGCAAGGCGAAGAACGGCGGAAGCAATGGCGCTACCATGCG
TTTCTGCCCGGAGGGCAACTGGGGGGCCAACCAGGGACTCTGTATCGCCA
GGCGCATGCTCGAGCCCATCCAAGCCAAGTACGGCTGCAGCTTCGCCGAT
CTGTGGACATTTGCCGGCAAAGTGGCTGTGGAAGAAGCGGGTGGGCCTGT
GATCCCCTGGAGGGCGGGCCGCTCAGATGCGGACGACGGGAGCAAAATCG
TCCCTGATGGCCGTTTGCCTGACGCGACGCAGGGGGCTGCACACCTCCGG
GACGTCTTTTACCGGATGGGCTTTAACGACAAGGATATTGTAGCTTTGAG
TGGGGCGCACTCAATGGGGTTCTGTCACCTGGATAATTCGGGCTTTGTGG
GCCCCTGGTCATTTGCGCCCAACTCGTTCAGCAATGAGTACTTCCGATTG
TTGGTGGATGAGAAGTGGGTTCCGAAAACAACGCACAAGGGGAAGCCGTG
GAAGGGCCCCCTGCAGTACCAGGACTCGACGGGAAAGCTCATGATGCTGC
CGACGGACTTGGCGCTGATGGAAGACCCTGAATTCAAGAAGCACGTGATA
GCATACAAGGAGGACGAGGAGTTGTTTTTCAAGGACTTTGCGGCGGCCTT
TGGGAAGTTGATGGAGCTTGGATGTCCCTTTCCTAACGCAGGGGGAGCGG
CGGGTGGAGCGGGGATTATTGGTGAGGTGAAACGGATGTTCGGTCTTACG
GCTTAG back to top
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