jgi.p|Nanoce1779_2|572077, mRNA_1434 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572077
Unique Name	mRNA_1434
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2207
Alignment location	scaffold_1:540165..542371 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572163
Track	FilteredModels2
ProteinId	572077

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:540165..542371 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572077	gene_1434	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572077	mRNA_1434-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1434	CDS_1434	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:540165..542371+
coding sequence from alignment at scaffold_1:540165..542371+

mRNA sequence

>mRNA_1434 ID=mRNA_1434|Name=jgi.p|Nanoce1779_2|572077|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp
CTGCTGCTGCTGCTGCTGCTGCTGTTCTTCGCGACCAAAGCGAGCGTGCA
GTGCCTGGAGCTTGTCATAATGCGCTTGATTGACCGTCACGGTCGTGGCC
TTATGCTGTAGCTGATATAGGCCCCGCCCGGCGTCAAACCGCACTCGAAT
CAATGGTTGTCGTCCCTTCAAGTCACTGCTTACAGAGCCCATCATAGCCG
AAGCCCGCTGTACTTGCCCCAGGAGCTTCACGGCCGTCTTATTCAAATCA
CTCATCACCTTCTCGGCACTGCTCTTGCTCACCCCTCCGTCCACTAACTC
CCGCCTCAACAACGTCCGCCCAGCCTTGGCATGCTCATCCCCCAAACGGG
GGTCTGGCAAAATCGGGTCATCACTCCCATCTATCCTGTGTTGCGAAAAG
AGCCAGCGTTCAAATGGCGGGATTCGCAGATCCATTTCCAACCCTCGGTT
GACCTTGTTGAGGAAAAAGCACGTCAAGTTTCCCACGGCGTTGTGTCGCA
AAATTTCCAGATTCAGTTCGGGAGACGGGCGAATGTATCCTTGGCAACGG
GCCTTGGCGTGGCGGAGGGCATCCTTGGGAGGCTTAATGTCAGGGCGCCA
GATAGAGGAAGAGGATGGGCTAGTGGGGGAGGGAAGGGAGGTTTGGGCGT
CGTTGTCGTCGTCGTCGTCATCGTCGTCTGAGTCTTTGGAGGATACCGCT
GCTGCTGCTGCTGTTGCGGTTGCTACTTCATCTGTTCCTTCTCTGGGCAT
CCCTCCCACTTGCGTTTTGTACATTTCGTCCAACAAGGCGTCCATCTTTG
TTGTTTGCCTGTGATTTGGGGGGGATGAGGAGGAGGTTGAATGAATGAAG
ATCTCATCAGCCTGTCCCCTCCCTTCCCTTCACAAAGCATACACAGAGCA
CGCGAGCATAGTCAACTCCTTGCCGTACACAGCACGCAGCTCTCCAGTCC
CCGCTCTGGGTGGTCCCAGAATCGTCATCGCCGGCCTTTCGCCCTTTACC
CTCCCGCTCTCAGGGGCTACAACGCCGTCTTCCACTTCACACACGACATC
CCCTTTCTCACAGCCATAGACAATGGTGCCGCCTTTTCTCTTCCACGGCG
AAGGATCAATGCCACCATCTCTACAGCCCGCACTTTCACAACCGCATCAG
GACCATGACGCCCTTCTTCATCCTTTCCTACGAGCGCATGGCGTCGACGG
GGTCTGCCTCGTGGGGCCCCGGCAGAGCGGTAAGAGCAGTTTGGGCTTTG
ACGTGTGCTACAAGATGGCTCAATCCCAGCCAGATAGGCAAATGCTCTTC
ATCCACCGGCATGAGGATGCCCGGCTGGTGGCCAAGACGGTCCGTTTCGT
CGTCCTCCCTCCTCCCTTCTCCTCCTCCCCCTCGGCCATGCAGCACCCCA
AACGCGATCCCCCCGTTCCCGGTTGGGATTTTTCCGTCCTCGAAAATGTC
TTCCTCAAGCGTTTTACAACTGTGCAACAACTTTGCTGGTATTTTGGGAG
CCTCCACCAACAGCCCGACCACTTACTCCCCTCCGTCATCGTCGTGGACG
ATCTCGACAAGTTCCGTAGCACCACCCCTCGTGGCGACAACCCCTTGCGA
GCCCCTTGTAAGGTGTTGAGCGTGATGCGGGACGCAGCTATGCACATTAA
ACGCCGTACAGGCCGGGCATGTGTGTTGGTGGTGACAATGGAGTTTGCTG
ACCGAGGGTTGATGGCGCCCTTGACGAGGCAGCTAGGGATCGTCTTGAGG
GTTGTCAGACAGCAGCAGCAGCAGGGGGAAAGAACAGGAGAATGGGCATG
GTCACTGCAGGAGGATAAGGAGTGTCTACAGTTATTGGGAAAGTCGTCTT
ATTCAGTGAGGGATACATATTGTTTTACTTTCGAAGGAGGATTGATCCAG
GTGCTTGGGGAGGATCAGAAATGAGTAGAATATGTACGGAAAATGACGAA
TGAGAATGAAAGATGCCTTTGAAAACTACGCGTTACTTGTAGTTGTACTG
TGCATGACTGATGAAGGGTTGATGTTCGTGGTATATGTTCTCGACGGGAA
CGTCGAGACGTGAAACAAGGAAAGAAGAAAACCCTCTATGTCATCCTCTC
TCGCTACACCCGACCTTGCTTACTTGCTTTTACTCGTACAGTTCCTTTTC
ACACATTTTGATATCATCTCAGTCGCTCATCCTCCTCTCCTCTCCTTCCT
CCTCCTC

protein sequence of jgi.p|Nanoce1779_2|572077

>mRNA_1434-protein ID=mRNA_1434-protein|Name=jgi.p|Nanoce1779_2|572077|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MVPPFLFHGEGSMPPSLQPALSQPHQDHDALLHPFLRAHGVDGVCLVGPR
QSGKSSLGFDVCYKMAQSQPDRQMLFIHRHEDARLVAKTVRFVVLPPPFS
SSPSAMQHPKRDPPVPGWDFSVLENVFLKRFTTVQQLCWYFGSLHQQPDH
LLPSVIVVDDLDKFRSTTPRGDNPLRAPCKVLSVMRDAAMHIKRRTGRAC
VLVVTMEFADRGLMAPLTRQLGIVLRVVRQQQQQGERTGEWAWSLQEDKE
CLQLLGKSSYSVRDTYCFTFEGGLIQVLGEDQK*

mRNA from alignment at scaffold_1:540165..542371+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1434 ID=mRNA_1434|Name=jgi.p|Nanoce1779_2|572077|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp|location=Sequence derived from alignment at scaffold_1:540165..542371+ (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTGTTCTTCGCGACCAAAGCGAGCGTGCA
GTGCCTGGAGCTTGTCATAATGCGCTTGATTGACCGTCACGGTCGTGGCC
TTATGCTGTAGCTGATATAGGCCCCGCCCGGCGTCAAACCGCACTCGAAT
CAATGGTTGTCGTCCCTTCAAGTCACTGCTTACAGAGCCCATCATAGCCG
AAGCCCGCTGTACTTGCCCCAGGAGCTTCACGGCCGTCTTATTCAAATCA
CTCATCACCTTCTCGGCACTGCTCTTGCTCACCCCTCCGTCCACTAACTC
CCGCCTCAACAACGTCCGCCCAGCCTTGGCATGCTCATCCCCCAAACGGG
GGTCTGGCAAAATCGGGTCATCACTCCCATCTATCCTGTGTTGCGAAAAG
AGCCAGCGTTCAAATGGCGGGATTCGCAGATCCATTTCCAACCCTCGGTT
GACCTTGTTGAGGAAAAAGCACGTCAAGTTTCCCACGGCGTTGTGTCGCA
AAATTTCCAGATTCAGTTCGGGAGACGGGCGAATGTATCCTTGGCAACGG
GCCTTGGCGTGGCGGAGGGCATCCTTGGGAGGCTTAATGTCAGGGCGCCA
GATAGAGGAAGAGGATGGGCTAGTGGGGGAGGGAAGGGAGGTTTGGGCGT
CGTTGTCGTCGTCGTCGTCATCGTCGTCTGAGTCTTTGGAGGATACCGCT
GCTGCTGCTGCTGTTGCGGTTGCTACTTCATCTGTTCCTTCTCTGGGCAT
CCCTCCCACTTGCGTTTTGTACATTTCGTCCAACAAGGCGTCCATCTTTG
TTGTTTGCCTGTGATTTGGGGGGGATGAGGAGGAGGTTGAATGAATGAAG
ATCTCATCAGCCTGTCCCCTCCCTTCCCTTCACAAAGCATACACAGAGCA
CGCGAGCATAGTCAACTCCTTGCCGTACACAGCACGCAGCTCTCCAGTCC
CCGCTCTGGGTGGTCCCAGAATCGTCATCGCCGGCCTTTCGCCCTTTACC
CTCCCGCTCTCAGGGGCTACAACGCCGTCTTCCACTTCACACACGACATC
CCCTTTCTCACAGCCATAGACAATGGTGCCGCCTTTTCTCTTCCACGGCG
AAGGATCAATGCCACCATCTCTACAGCCCGCACTTTCACAACCGCATCAG
GACCATGACGCCCTTCTTCATCCTTTCCTACGAGCGCATGGCGTCGACGG
GGTCTGCCTCGTGGGGCCCCGGCAGAGCGGTAAGAGCAGTTTGGGCTTTG
ACGTGTGCTACAAGATGGCTCAATCCCAGCCAGATAGGCAAATGCTCTTC
ATCCACCGGCATGAGGATGCCCGGCTGGTGGCCAAGACGGTCCGTTTCGT
CGTCCTCCCTCCTCCCTTCTCCTCCTCCCCCTCGGCCATGCAGCACCCCA
AACGCGATCCCCCCGTTCCCGGTTGGGATTTTTCCGTCCTCGAAAATGTC
TTCCTCAAGCGTTTTACAACTGTGCAACAACTTTGCTGGTATTTTGGGAG
CCTCCACCAACAGCCCGACCACTTACTCCCCTCCGTCATCGTCGTGGACG
ATCTCGACAAGTTCCGTAGCACCACCCCTCGTGGCGACAACCCCTTGCGA
GCCCCTTGTAAGGTGTTGAGCGTGATGCGGGACGCAGCTATGCACATTAA
ACGCCGTACAGGCCGGGCATGTGTGTTGGTGGTGACAATGGAGTTTGCTG
ACCGAGGGTTGATGGCGCCCTTGACGAGGCAGCTAGGGATCGTCTTGAGG
GTTGTCAGACAGCAGCAGCAGCAGGGGGAAAGAACAGGAGAATGGGCATG
GTCACTGCAGGAGGATAAGGAGTGTCTACAGTTATTGGGAAAGTCGTCTT
ATTCAGTGAGGGATACATATTGTTTTACTTTCGAAGGAGGATTGATCCAG
GTGCTTGGGGAGGATCAGAAATGAGTAGAATATGTACGGAAAATGACGAA
TGAGAATGAAAGATGCCTTTGAAAACTACGCGTTACTTGTAGTTGTACTG
TGCATGACTGATGAAGGGTTGATGTTCGTGGTATATGTTCTCGACGGGAA
CGTCGAGACGTGAAACAAGGAAAGAAGAAAACCCTCTATGTCATCCTCTC
TCGCTACACCCGACCTTGCTTACTTGCTTTTACTCGTACAGTTCCTTTTC
ACACATTTTGATATCATCTCAGTCGCTCATCCTCCTCTCCTCTCCTTCCT
CCTCCTC

Coding sequence (CDS) from alignment at scaffold_1:540165..542371+

>mRNA_1434 ID=mRNA_1434|Name=jgi.p|Nanoce1779_2|572077|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_1:540165..542371+ (Nannochloropsis oceanica)
ATGGTGCCGCCTTTTCTCTTCCACGGCGAAGGATCAATGCCACCATCTCT
ACAGCCCGCACTTTCACAACCGCATCAGGACCATGACGCCCTTCTTCATC
CTTTCCTACGAGCGCATGGCGTCGACGGGGTCTGCCTCGTGGGGCCCCGG
CAGAGCGGTAAGAGCAGTTTGGGCTTTGACGTGTGCTACAAGATGGCTCA
ATCCCAGCCAGATAGGCAAATGCTCTTCATCCACCGGCATGAGGATGCCC
GGCTGGTGGCCAAGACGGTCCGTTTCGTCGTCCTCCCTCCTCCCTTCTCC
TCCTCCCCCTCGGCCATGCAGCACCCCAAACGCGATCCCCCCGTTCCCGG
TTGGGATTTTTCCGTCCTCGAAAATGTCTTCCTCAAGCGTTTTACAACTG
TGCAACAACTTTGCTGGTATTTTGGGAGCCTCCACCAACAGCCCGACCAC
TTACTCCCCTCCGTCATCGTCGTGGACGATCTCGACAAGTTCCGTAGCAC
CACCCCTCGTGGCGACAACCCCTTGCGAGCCCCTTGTAAGGTGTTGAGCG
TGATGCGGGACGCAGCTATGCACATTAAACGCCGTACAGGCCGGGCATGT
GTGTTGGTGGTGACAATGGAGTTTGCTGACCGAGGGTTGATGGCGCCCTT
GACGAGGCAGCTAGGGATCGTCTTGAGGGTTGTCAGACAGCAGCAGCAGC
AGGGGGAAAGAACAGGAGAATGGGCATGGTCACTGCAGGAGGATAAGGAG
TGTCTACAGTTATTGGGAAAGTCGTCTTATTCAGTGAGGGATACATATTG
TTTTACTTTCGAAGGAGGATTGATCCAGGTGCTTGGGGAGGATCAGAAAT
GA

Synonyms

Publications