jgi.p|Nanoce1779_2|572073, mRNA_1432 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572073
Unique NamemRNA_1432
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_1:538197..538844 +

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Properties
Property NameValue
TranscriptId572159
TrackFilteredModels2
ProteinId572073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:538197..538844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572073gene_1432Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572073mRNA_1432-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1432CDS_1432Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Nanoce1779_2|572073|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
AGCGACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTCC
AGGCATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTGC
GGCCGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGACA
ACTCGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACAC
AAACGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGCA
AAATCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTTT
CATCCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGTA
CGCCAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAGG
GCATCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCGC
GCCACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCAG
GGATGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTTG
ATTTGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAAG
TACCTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAG
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protein sequence of jgi.p|Nanoce1779_2|572073

>mRNA_1432-protein ID=mRNA_1432-protein|Name=jgi.p|Nanoce1779_2|572073|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
SDLASNIAGVFDGHLTPGIRPCLLIIDMVQAYLRPESPIYAGIEDALAST
TRLLHQARCLGVPVIHTNVEFIPGGLNGGVFFRKIPLLRIFQEGSPLGAF
HPDLAPLAHEVVVTKQYASAFFGTSLASTLTAQGIDTVLIAGVSTSGCVR
ATATDACQHGFIPIVVRDAVGDRHVQVHEANLFDLQAKYAEVLSEVDVSK
YLEELAVKKKTWTRR*
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mRNA from alignment at scaffold_1:538197..538844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Nanoce1779_2|572073|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_1:538197..538844+ (Nannochloropsis oceanica)
AGCGACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTCC
AGGCATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTGC
GGCCGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGACA
ACTCGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACAC
AAACGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGCA
AAATCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTTT
CATCCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGTA
CGCCAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAGG
GCATCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCGC
GCCACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCAG
GGATGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTTG
ATTTGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAAG
TACCTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAG
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Coding sequence (CDS) from alignment at scaffold_1:538197..538844+

>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Nanoce1779_2|572073|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_1:538197..538844+ (Nannochloropsis oceanica)
AGCGACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTCC
AGGCATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTGC
GGCCGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGACA
ACTCGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACAC
AAACGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGCA
AAATCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTTT
CATCCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGTA
CGCCAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAGG
GCATCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCGC
GCCACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCAG
GGATGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTTG
ATTTGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAAG
TACCTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAG
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Synonyms
Publications