jgi.p|Nanoce1779_2|624444, mRNA_1431 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624444
Unique NamemRNA_1431
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1572
Alignment locationscaffold_1:536100..537671 +

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Properties
Property NameValue
TranscriptId624530
TrackFilteredModels2
ProteinId624444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:536100..537671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624444gene_1431Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624444mRNA_1431-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1431CDS_1431Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1431 ID=mRNA_1431|Name=jgi.p|Nanoce1779_2|624444|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
ACAGGACAGTGCTACGCTTAGTGCTTGGCCGGCCACGTCGACGACTTTCT
CCTCGTCCTAGTTGTGCAGGTGGCGTGCGTTTCCCCCCATATTTGCCTGC
ACCAGCACACCGTGAACGCAAAGCCTCCCCACTGCCCCATCGCTGAAGTT
AAAGTCCTGGTCGACTTCCGACGCACTTAGCCTGCGAGACCACACGAGTC
ACAATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTT
TCTCGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCA
ACACATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTC
CTCTCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGG
ACTTAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGG
GTCATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGAC
GCGGTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCG
CGCCATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTG
TGGTGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAG
GAGGAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGA
GGAGGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGA
CAGCCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATG
AAGAAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCAT
CAAAAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACA
CGATTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTG
ACGACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACC
ACTGCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCAT
GTACGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCA
GTTATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAAT
GATTAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGT
GTGTGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTG
TCATTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGT
GACGCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGG
AGAAGGAGGAGTCGGTGGCGCGGATAGATTAATGGTTGGCAAAGTCCTTG
TGCAGTGGCAGCAGCAGAAGGAAACAAAAACAGGAAGCACATGTGTAGCA
GGTATTTTGATCATTTTTGCCGCCTAAATAAAGAAAGATAAAGAGAGAAA
ACTTTGTTGACGTTGAGATAGCAAGATTCAAGAATTAGGGGGAAAAAAAG
AAAAGAAAAGGAAAAAAAAAGG
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protein sequence of jgi.p|Nanoce1779_2|624444

>mRNA_1431-protein ID=mRNA_1431-protein|Name=jgi.p|Nanoce1779_2|624444|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MMSRPAFWAHLFAALFLAPSHSSRAAVLPLVLNTWSGDFTGATHTAFDVL
SQPGPAGDRLNALEKGLNYCELHQCGGSVGFGGHPDASGEVTLDAMIMDA
VTHDVGGVGGLRRVKRAISVARGVLEHTNHSIVVGDAATRFAVEFLGMEE
ETLSTPESEKAFEVWEEGGCQPNYYRGFVNCTTACPPYQLSDNDKEEKMK
KPGTGISSSSSGRSSIKRQARFSPHVHEGNHDTIGMVVIDAQGDLACGVT
TNGLGNKVPGRVGDSPLPGSGCYVENDVGGCACTGDGDVMLRFAPSAHAV
MFMEGGASPTEAAERMIRKVAAFYPGYRGGMVCVNKRGEYGAAGYNFGLS
FSVKGAGMQEVETFDVTPLGGVRKGGRKEKEEEKEESVARID*
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mRNA from alignment at scaffold_1:536100..537671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1431 ID=mRNA_1431|Name=jgi.p|Nanoce1779_2|624444|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_1:536100..537671+ (Nannochloropsis oceanica)
ACAGGACAGTGCTACGCTTAGTGCTTGGCCGGCCACGTCGACGACTTTCT
CCTCGTCCTAGTTGTGCAGGTGGCGTGCGTTTCCCCCCATATTTGCCTGC
ACCAGCACACCGTGAACGCAAAGCCTCCCCACTGCCCCATCGCTGAAGTT
AAAGTCCTGGTCGACTTCCGACGCACTTAGCCTGCGAGACCACACGAGTC
ACAATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTT
TCTCGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCA
ACACATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTC
CTCTCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGG
ACTTAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGG
GTCATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGAC
GCGGTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCG
CGCCATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTG
TGGTGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAG
GAGGAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGA
GGAGGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGA
CAGCCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATG
AAGAAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCAT
CAAAAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACA
CGATTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTG
ACGACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACC
ACTGCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCAT
GTACGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCA
GTTATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAAT
GATTAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGT
GTGTGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTG
TCATTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGT
GACGCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGG
AGAAGGAGGAGTCGGTGGCGCGGATAGATTAATGGTTGGCAAAGTCCTTG
TGCAGTGGCAGCAGCAGAAGGAAACAAAAACAGGAAGCACATGTGTAGCA
GGTATTTTGATCATTTTTGCCGCCTAAATAAAGAAAGATAAAGAGAGAAA
ACTTTGTTGACGTTGAGATAGCAAGATTCAAGAATTAGGGGGAAAAAAAG
AAAAGAAAAGGAAAAAAAAAGG
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Coding sequence (CDS) from alignment at scaffold_1:536100..537671+

>mRNA_1431 ID=mRNA_1431|Name=jgi.p|Nanoce1779_2|624444|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_1:536100..537671+ (Nannochloropsis oceanica)
ATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTTTCT
CGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCAACA
CATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTCCTC
TCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGGACT
TAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGGGTC
ATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGACGCG
GTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCGCGC
CATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTGTGG
TGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAGGAG
GAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGAGGA
GGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGACAG
CCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATGAAG
AAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCATCAA
AAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACACGA
TTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTGACG
ACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACCACT
GCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCATGTA
CGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCAGTT
ATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAATGAT
TAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGTGTG
TGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTGTCA
TTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGTGAC
GCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGGAGA
AGGAGGAGTCGGTGGCGCGGATAGATTAA
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Synonyms
Publications