jgi.p|Nanoce1779_2|231078, mRNA_143 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|231078
Unique NamemRNA_143
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length472
Alignment locationscaffold_3:369428..369899 -

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Properties
Property NameValue
TranscriptId231164
TrackFilteredModels2
ProteinId231078
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:369428..369899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231078gene_143Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231078mRNA_143-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_143CDS_143Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_143 ID=mRNA_143|Name=jgi.p|Nanoce1779_2|231078|organism=Nannochloropsis oceanica|type=mRNA|length=472bp
CAAAAAGCCATATTCTACACTATCATCATCCCGCATCATCAGTTGCTTTA
TTCCTCTTCCTCTCCTCGCCTTCCCTGTGACAACACAAAGGTATGTCTTT
GTCTGTTTGTCTCGGAAATTTAAGTCATCTCTACCCTGCTCTGTCTGCAT
TTTTGCCTTCGTCGAAGCTGCCCTTATCCGCCTGTCTATCGTCCGAAATC
GTGATACCAAAATTTCCTCCATTGAGAGGATACTTAGCCTGTTATTCCTA
CTGGTGTGGTTGTTGTGTTGTTGTGTTGTGTGTTGTGGCCTTTTGTGGCC
TGTGGCCGGCGGCTGCACAGTTTAGAATACTTGGCATAACCTTGTCCTTG
TATCATCCATGCACATTCGTTCATTTCGTAGCTTTTCGTTTTGTGTCCAC
CGATCAAGGGAGAAAGGGCCTCATCCTCACCTAAAACACCCATTACGCAT
ATAGCACTACAAACCTTCACCA
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protein sequence of jgi.p|Nanoce1779_2|231078

>mRNA_143-protein ID=mRNA_143-protein|Name=jgi.p|Nanoce1779_2|231078|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MSLSVCLGNLSHLYPALSAFLPSSKLPLSACLSSEIVIPKFPPLRGYLAC
YSYWCGCCVVVLCVVAFCGLWPAAAQFRILGITLSLYHPCTFVHFVAFRF
VSTDQGRKGLILT*
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mRNA from alignment at scaffold_3:369428..369899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_143 ID=mRNA_143|Name=jgi.p|Nanoce1779_2|231078|organism=Nannochloropsis oceanica|type=mRNA|length=472bp|location=Sequence derived from alignment at scaffold_3:369428..369899- (Nannochloropsis oceanica)
CAAAAAGCCATATTCTACACTATCATCATCCCGCATCATCAGTTGCTTTA
TTCCTCTTCCTCTCCTCGCCTTCCCTGTGACAACACAAAGGTATGTCTTT
GTCTGTTTGTCTCGGAAATTTAAGTCATCTCTACCCTGCTCTGTCTGCAT
TTTTGCCTTCGTCGAAGCTGCCCTTATCCGCCTGTCTATCGTCCGAAATC
GTGATACCAAAATTTCCTCCATTGAGAGGATACTTAGCCTGTTATTCCTA
CTGGTGTGGTTGTTGTGTTGTTGTGTTGTGTGTTGTGGCCTTTTGTGGCC
TGTGGCCGGCGGCTGCACAGTTTAGAATACTTGGCATAACCTTGTCCTTG
TATCATCCATGCACATTCGTTCATTTCGTAGCTTTTCGTTTTGTGTCCAC
CGATCAAGGGAGAAAGGGCCTCATCCTCACCTAAAACACCCATTACGCAT
ATAGCACTACAAACCTTCACCA
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Coding sequence (CDS) from alignment at scaffold_3:369428..369899-

>mRNA_143 ID=mRNA_143|Name=jgi.p|Nanoce1779_2|231078|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_3:369428..369899- (Nannochloropsis oceanica)
ATGTCTTTGTCTGTTTGTCTCGGAAATTTAAGTCATCTCTACCCTGCTCT
GTCTGCATTTTTGCCTTCGTCGAAGCTGCCCTTATCCGCCTGTCTATCGT
CCGAAATCGTGATACCAAAATTTCCTCCATTGAGAGGATACTTAGCCTGT
TATTCCTACTGGTGTGGTTGTTGTGTTGTTGTGTTGTGTGTTGTGGCCTT
TTGTGGCCTGTGGCCGGCGGCTGCACAGTTTAGAATACTTGGCATAACCT
TGTCCTTGTATCATCCATGCACATTCGTTCATTTCGTAGCTTTTCGTTTT
GTGTCCACCGATCAAGGGAGAAAGGGCCTCATCCTCACCTAA
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Synonyms
Publications