jgi.p|Nanoce1779_2|6026, mRNA_1428 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|6026
Unique Name	mRNA_1428
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2988
Alignment location	scaffold_1:525499..528486 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	6112
Track	FilteredModels2
ProteinId	6026

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:525499..528486 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6026	gene_1428	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6026	mRNA_1428-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1428	CDS_1428	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:525499..528486-
coding sequence from alignment at scaffold_1:525499..528486-

mRNA sequence

>mRNA_1428 ID=mRNA_1428|Name=jgi.p|Nanoce1779_2|6026|organism=Nannochloropsis oceanica|type=mRNA|length=2988bp
TTCGCACGAGACACACTCTCACCCACGCTGCGCTATCCCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTACCAGGCGATGGCCACACCTACGAACGCTA
TGCGATCGAAGAGTGGTTCCGAAGGAATCATCGAACATCTCCCTTGACAG
GTGCTCCTCTGCTCAATCTTTCATTGGTCGGGAACATTACCTTGCGTAAT
GCGATCGAAGAGTACAGGGCTAGCATCGACAAACTCCAGTCACCCGGGCG
GGTAACTAGTCCGGGGGAGGAAAAGCGACGGGCGTTGGCTTCAGCCTTGG
ATGCGCGAGAGATGCGCATGGGTGAAATTCGGCGAGTGGTACCCAAGGAG
AGCGACATGATGGACATGGGAGTGATTGAAAGTGAGGAGGATCGGGAGGA
CATTGGTTATTGGCTTCGAACTCGGACGATGCTGTGTCATGATGTTGTGA
CTGAGTACGTGGAGTTATTGAGAAGTGAGGGAGCAAGTAGCATGAGCTTT
TTGCGGGACGCTGACTACTCTCGCAGGGAACTGATCGACCTCGGCGTACG
CGTGCCTCACGTGGCGAGCTTGCATCGGATCGTGGACGAATATAGCGGCC
GAGAGACGGCAGGAATGGGCTCTTCCCCCTCTGGTCGAGAGGAAGGACCG
GTCACCCCAGATGCAGCGGGTGCTACGGCCCTGGCGAGCGCTCTGCGGAC
GGTGGTAAGCAATGCGACCGTGGATAGAAACCATCCCTTGGTGAATGCAT
TAAATCGGTGCGGGTTGCGTTTGAACATGGACAATGGCCCGCTAACGACA
TTTATGCTGTTGGTTAAAGCACTGAAGATGGTGCAGGGGAGCGCAGCAGT
GGCAACAGCAGGTTTGGAGGTAATGCGAACTCTGGGGAGGGATGAGGCGC
ACCGACGGGCGTTTGGGGAGGTGGGGGCTTGCGAGGTGGTTGTGCCGCAA
ATGCGTGCGTTTCCCTTGGAGGCCAGCGTGGCGGCGGAGGGATGTTGGGC
GATTCGGAATATGGCGATTGATGACTCTTTGGCTGCCATCCTTGCGGCGT
ATGATGCCTGCCAGGCGGTGGTCACGGCCATGACTTCCTTCCCGACGCAC
AAATCGACACAAGAGCAAGCGGCGGCGGCCATTGTCAATCTGGGAGGGAA
TAATCGTGAGTTAAAACGGGCATTGGCGACTGCGGGTGCGACTAGGGCGA
TTATCGGATCGATGCGTTCGTGGCCAATCGATCCTGATGTGCTCAAGCAG
TGCTGTTGGGCTATTTTGACCTTGGCTGTGGATGACGAGATTGCTCGGAG
GCTGTTTAGTGAGGGGTCGTGTGAGGCAGTAGTGGCGGCCATGCGGGCCT
GCCCGACGGATCGTTTGGTTTTGACAAAGGCGTGTGCAGCGATTGTGAAT
TTGAGTGGGGGAAATCAGACGATCAAGACAAGTTTTGGCACGATGGGGGC
ATGTGATGAGGTGATCCGGGCTATGCGTGCTTTTCCCCGAGACGGCCCTT
TGCAAAAGCAGGTGTGTTGGGCAATGAAGAATTTGGCCGGGGCGAATGAC
CCGAATAGGAAGCGATTTGCGCCGGGTTTGGATGGGGTGGTGCTTGCGGT
GAGGAATTTTGGGGCCGATCGGGATGTGGCTGAGCAGGCGTTGGGAGCTT
TGAGGACATTGGCGGTTGATGACGAGAATGCACGTTCCTTCGGTGAGCTT
GGGGCGTGCGACGTGGTGACAACAGCCATGCGAGCGCATCCGCTGGTGGC
TGGGATTCAGGTGCAGTCGTGTGGGTCAGTCATCAATCTTTGTGGAAACA
ACCCGGAGAACCGGAAGCGTCTGGCTGACACGGGCGCCTGCGAGCTGGTG
GCTGCGGCGTTGCGGAACCACCGCACAGACCGCGGAGTGAATGAGCAAGC
CTGCTGGGCCGTCACTTCTCTAGGGGTATCGACCCCGGAAAATCGGCGCA
AGCTGGGAGAGGCCGGGGTGTGCCAGTGCATCGTCGCCACCCTCCGGACT
TTCCATGCAGACCGGCCTGTCGTCGAGCAAGCTGTGTCTGCCGTTCGCAA
CCTGGCGATTGAGGAGGATAACACGCGGAAACTGGGAGCGGAGGGGGCGT
GTGATGCCATTGTGATGGTAATGAGGGCTTATCCCACCGAGGCTACTTTC
CAATCGAAGGCGTGCGCGGCAGTGGTAAACTTGGCCGGGGGAAATTCGGA
CAATAAGCGAAAGCTTGGCTTGGGAGGGGCCGTTGAAGCGGTGGTGGAGG
CGCTGAAAGCATTTCCGGCTGATGCATCAGTCACAGAGCAAGGCTTGTGG
GCAACAAAGAACATGGCGGTGGACGCTGAAAACACTGTGTTGTTTGGAAA
TGTGGGAATTTGTGAAGTGATAGTGTCGGCACTTCGTTCTTTCCAGTCGG
AGCCACGGGTGTTGATTCAGGCACTGGCAGCGGCAGTTAATTGCTCGGGC
GGAAATGATGAAAATAAAAAGAGACTTGGATCATTGGGGGCTTGCCAGGA
AATTGTTAAGTCCATGCAGTCTTTCCCTGGAAACGCCACGGTGCAGTTGC
AGGCTTGTTGGTGCATCAAGAATATCAGCAATAATAGCGATGAGAACAAA
CGGAAGTTTGGCCCGACAGCAGGGGAGTTGGTGGTGGCGGCACTAAGGAC
GTTTTCGACTGATGAAGGTATTCTGAGGGAGGGAAAGGCAGCTTTGAGGA
ATTTGAGTAACAACAACCCAGAAAATCGTGCGAGGATCGAGGCGTTGAAC
TATAAGGAGCACCTAGTCCGGGTGTCCCCCTTTTCGGGTTCGGGGGGGAA
TAAATGAATCGAGGAGAGTGTGGAGGGGATGGAGGCAGGGAGGGAGGGAT
GCTTTATGGCAGGTAGAAATCGACCCGGTTCGTTGTTGGAGGCGTTGAGT
CGGTTGAGGGTAGGGAGAGAGCGACGGAGGGAGGTGGG

protein sequence of jgi.p|Nanoce1779_2|6026

>mRNA_1428-protein ID=mRNA_1428-protein|Name=jgi.p|Nanoce1779_2|6026|organism=Nannochloropsis oceanica|type=polypeptide|length=832bp
MRMGEIRRVVPKESDMMDMGVIESEEDREDIGYWLRTRTMLCHDVVTEYV
ELLRSEGASSMSFLRDADYSRRELIDLGVRVPHVASLHRIVDEYSGRETA
GMGSSPSGREEGPVTPDAAGATALASALRTVVSNATVDRNHPLVNALNRC
GLRLNMDNGPLTTFMLLVKALKMVQGSAAVATAGLEVMRTLGRDEAHRRA
FGEVGACEVVVPQMRAFPLEASVAAEGCWAIRNMAIDDSLAAILAAYDAC
QAVVTAMTSFPTHKSTQEQAAAAIVNLGGNNRELKRALATAGATRAIIGS
MRSWPIDPDVLKQCCWAILTLAVDDEIARRLFSEGSCEAVVAAMRACPTD
RLVLTKACAAIVNLSGGNQTIKTSFGTMGACDEVIRAMRAFPRDGPLQKQ
VCWAMKNLAGANDPNRKRFAPGLDGVVLAVRNFGADRDVAEQALGALRTL
AVDDENARSFGELGACDVVTTAMRAHPLVAGIQVQSCGSVINLCGNNPEN
RKRLADTGACELVAAALRNHRTDRGVNEQACWAVTSLGVSTPENRRKLGE
AGVCQCIVATLRTFHADRPVVEQAVSAVRNLAIEEDNTRKLGAEGACDAI
VMVMRAYPTEATFQSKACAAVVNLAGGNSDNKRKLGLGGAVEAVVEALKA
FPADASVTEQGLWATKNMAVDAENTVLFGNVGICEVIVSALRSFQSEPRV
LIQALAAAVNCSGGNDENKKRLGSLGACQEIVKSMQSFPGNATVQLQACW
CIKNISNNSDENKRKFGPTAGELVVAALRTFSTDEGILREGKAALRNLSN
NNPENRARIEALNYKEHLVRVSPFSGSGGNK*

mRNA from alignment at scaffold_1:525499..528486-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1428 ID=mRNA_1428|Name=jgi.p|Nanoce1779_2|6026|organism=Nannochloropsis oceanica|type=mRNA|length=2988bp|location=Sequence derived from alignment at scaffold_1:525499..528486- (Nannochloropsis oceanica)
TTCGCACGAGACACACTCTCACCCACGCTGCGCTATCCCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTACCAGGCGATGGCCACACCTACGAACGCTA
TGCGATCGAAGAGTGGTTCCGAAGGAATCATCGAACATCTCCCTTGACAG
GTGCTCCTCTGCTCAATCTTTCATTGGTCGGGAACATTACCTTGCGTAAT
GCGATCGAAGAGTACAGGGCTAGCATCGACAAACTCCAGTCACCCGGGCG
GGTAACTAGTCCGGGGGAGGAAAAGCGACGGGCGTTGGCTTCAGCCTTGG
ATGCGCGAGAGATGCGCATGGGTGAAATTCGGCGAGTGGTACCCAAGGAG
AGCGACATGATGGACATGGGAGTGATTGAAAGTGAGGAGGATCGGGAGGA
CATTGGTTATTGGCTTCGAACTCGGACGATGCTGTGTCATGATGTTGTGA
CTGAGTACGTGGAGTTATTGAGAAGTGAGGGAGCAAGTAGCATGAGCTTT
TTGCGGGACGCTGACTACTCTCGCAGGGAACTGATCGACCTCGGCGTACG
CGTGCCTCACGTGGCGAGCTTGCATCGGATCGTGGACGAATATAGCGGCC
GAGAGACGGCAGGAATGGGCTCTTCCCCCTCTGGTCGAGAGGAAGGACCG
GTCACCCCAGATGCAGCGGGTGCTACGGCCCTGGCGAGCGCTCTGCGGAC
GGTGGTAAGCAATGCGACCGTGGATAGAAACCATCCCTTGGTGAATGCAT
TAAATCGGTGCGGGTTGCGTTTGAACATGGACAATGGCCCGCTAACGACA
TTTATGCTGTTGGTTAAAGCACTGAAGATGGTGCAGGGGAGCGCAGCAGT
GGCAACAGCAGGTTTGGAGGTAATGCGAACTCTGGGGAGGGATGAGGCGC
ACCGACGGGCGTTTGGGGAGGTGGGGGCTTGCGAGGTGGTTGTGCCGCAA
ATGCGTGCGTTTCCCTTGGAGGCCAGCGTGGCGGCGGAGGGATGTTGGGC
GATTCGGAATATGGCGATTGATGACTCTTTGGCTGCCATCCTTGCGGCGT
ATGATGCCTGCCAGGCGGTGGTCACGGCCATGACTTCCTTCCCGACGCAC
AAATCGACACAAGAGCAAGCGGCGGCGGCCATTGTCAATCTGGGAGGGAA
TAATCGTGAGTTAAAACGGGCATTGGCGACTGCGGGTGCGACTAGGGCGA
TTATCGGATCGATGCGTTCGTGGCCAATCGATCCTGATGTGCTCAAGCAG
TGCTGTTGGGCTATTTTGACCTTGGCTGTGGATGACGAGATTGCTCGGAG
GCTGTTTAGTGAGGGGTCGTGTGAGGCAGTAGTGGCGGCCATGCGGGCCT
GCCCGACGGATCGTTTGGTTTTGACAAAGGCGTGTGCAGCGATTGTGAAT
TTGAGTGGGGGAAATCAGACGATCAAGACAAGTTTTGGCACGATGGGGGC
ATGTGATGAGGTGATCCGGGCTATGCGTGCTTTTCCCCGAGACGGCCCTT
TGCAAAAGCAGGTGTGTTGGGCAATGAAGAATTTGGCCGGGGCGAATGAC
CCGAATAGGAAGCGATTTGCGCCGGGTTTGGATGGGGTGGTGCTTGCGGT
GAGGAATTTTGGGGCCGATCGGGATGTGGCTGAGCAGGCGTTGGGAGCTT
TGAGGACATTGGCGGTTGATGACGAGAATGCACGTTCCTTCGGTGAGCTT
GGGGCGTGCGACGTGGTGACAACAGCCATGCGAGCGCATCCGCTGGTGGC
TGGGATTCAGGTGCAGTCGTGTGGGTCAGTCATCAATCTTTGTGGAAACA
ACCCGGAGAACCGGAAGCGTCTGGCTGACACGGGCGCCTGCGAGCTGGTG
GCTGCGGCGTTGCGGAACCACCGCACAGACCGCGGAGTGAATGAGCAAGC
CTGCTGGGCCGTCACTTCTCTAGGGGTATCGACCCCGGAAAATCGGCGCA
AGCTGGGAGAGGCCGGGGTGTGCCAGTGCATCGTCGCCACCCTCCGGACT
TTCCATGCAGACCGGCCTGTCGTCGAGCAAGCTGTGTCTGCCGTTCGCAA
CCTGGCGATTGAGGAGGATAACACGCGGAAACTGGGAGCGGAGGGGGCGT
GTGATGCCATTGTGATGGTAATGAGGGCTTATCCCACCGAGGCTACTTTC
CAATCGAAGGCGTGCGCGGCAGTGGTAAACTTGGCCGGGGGAAATTCGGA
CAATAAGCGAAAGCTTGGCTTGGGAGGGGCCGTTGAAGCGGTGGTGGAGG
CGCTGAAAGCATTTCCGGCTGATGCATCAGTCACAGAGCAAGGCTTGTGG
GCAACAAAGAACATGGCGGTGGACGCTGAAAACACTGTGTTGTTTGGAAA
TGTGGGAATTTGTGAAGTGATAGTGTCGGCACTTCGTTCTTTCCAGTCGG
AGCCACGGGTGTTGATTCAGGCACTGGCAGCGGCAGTTAATTGCTCGGGC
GGAAATGATGAAAATAAAAAGAGACTTGGATCATTGGGGGCTTGCCAGGA
AATTGTTAAGTCCATGCAGTCTTTCCCTGGAAACGCCACGGTGCAGTTGC
AGGCTTGTTGGTGCATCAAGAATATCAGCAATAATAGCGATGAGAACAAA
CGGAAGTTTGGCCCGACAGCAGGGGAGTTGGTGGTGGCGGCACTAAGGAC
GTTTTCGACTGATGAAGGTATTCTGAGGGAGGGAAAGGCAGCTTTGAGGA
ATTTGAGTAACAACAACCCAGAAAATCGTGCGAGGATCGAGGCGTTGAAC
TATAAGGAGCACCTAGTCCGGGTGTCCCCCTTTTCGGGTTCGGGGGGGAA
TAAATGAATCGAGGAGAGTGTGGAGGGGATGGAGGCAGGGAGGGAGGGAT
GCTTTATGGCAGGTAGAAATCGACCCGGTTCGTTGTTGGAGGCGTTGAGT
CGGTTGAGGGTAGGGAGAGAGCGACGGAGGGAGGTGGG

Coding sequence (CDS) from alignment at scaffold_1:525499..528486-

>mRNA_1428 ID=mRNA_1428|Name=jgi.p|Nanoce1779_2|6026|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_1:525499..528486- (Nannochloropsis oceanica)
ATGCGCATGGGTGAAATTCGGCGAGTGGTACCCAAGGAGAGCGACATGAT
GGACATGGGAGTGATTGAAAGTGAGGAGGATCGGGAGGACATTGGTTATT
GGCTTCGAACTCGGACGATGCTGTGTCATGATGTTGTGACTGAGTACGTG
GAGTTATTGAGAAGTGAGGGAGCAAGTAGCATGAGCTTTTTGCGGGACGC
TGACTACTCTCGCAGGGAACTGATCGACCTCGGCGTACGCGTGCCTCACG
TGGCGAGCTTGCATCGGATCGTGGACGAATATAGCGGCCGAGAGACGGCA
GGAATGGGCTCTTCCCCCTCTGGTCGAGAGGAAGGACCGGTCACCCCAGA
TGCAGCGGGTGCTACGGCCCTGGCGAGCGCTCTGCGGACGGTGGTAAGCA
ATGCGACCGTGGATAGAAACCATCCCTTGGTGAATGCATTAAATCGGTGC
GGGTTGCGTTTGAACATGGACAATGGCCCGCTAACGACATTTATGCTGTT
GGTTAAAGCACTGAAGATGGTGCAGGGGAGCGCAGCAGTGGCAACAGCAG
GTTTGGAGGTAATGCGAACTCTGGGGAGGGATGAGGCGCACCGACGGGCG
TTTGGGGAGGTGGGGGCTTGCGAGGTGGTTGTGCCGCAAATGCGTGCGTT
TCCCTTGGAGGCCAGCGTGGCGGCGGAGGGATGTTGGGCGATTCGGAATA
TGGCGATTGATGACTCTTTGGCTGCCATCCTTGCGGCGTATGATGCCTGC
CAGGCGGTGGTCACGGCCATGACTTCCTTCCCGACGCACAAATCGACACA
AGAGCAAGCGGCGGCGGCCATTGTCAATCTGGGAGGGAATAATCGTGAGT
TAAAACGGGCATTGGCGACTGCGGGTGCGACTAGGGCGATTATCGGATCG
ATGCGTTCGTGGCCAATCGATCCTGATGTGCTCAAGCAGTGCTGTTGGGC
TATTTTGACCTTGGCTGTGGATGACGAGATTGCTCGGAGGCTGTTTAGTG
AGGGGTCGTGTGAGGCAGTAGTGGCGGCCATGCGGGCCTGCCCGACGGAT
CGTTTGGTTTTGACAAAGGCGTGTGCAGCGATTGTGAATTTGAGTGGGGG
AAATCAGACGATCAAGACAAGTTTTGGCACGATGGGGGCATGTGATGAGG
TGATCCGGGCTATGCGTGCTTTTCCCCGAGACGGCCCTTTGCAAAAGCAG
GTGTGTTGGGCAATGAAGAATTTGGCCGGGGCGAATGACCCGAATAGGAA
GCGATTTGCGCCGGGTTTGGATGGGGTGGTGCTTGCGGTGAGGAATTTTG
GGGCCGATCGGGATGTGGCTGAGCAGGCGTTGGGAGCTTTGAGGACATTG
GCGGTTGATGACGAGAATGCACGTTCCTTCGGTGAGCTTGGGGCGTGCGA
CGTGGTGACAACAGCCATGCGAGCGCATCCGCTGGTGGCTGGGATTCAGG
TGCAGTCGTGTGGGTCAGTCATCAATCTTTGTGGAAACAACCCGGAGAAC
CGGAAGCGTCTGGCTGACACGGGCGCCTGCGAGCTGGTGGCTGCGGCGTT
GCGGAACCACCGCACAGACCGCGGAGTGAATGAGCAAGCCTGCTGGGCCG
TCACTTCTCTAGGGGTATCGACCCCGGAAAATCGGCGCAAGCTGGGAGAG
GCCGGGGTGTGCCAGTGCATCGTCGCCACCCTCCGGACTTTCCATGCAGA
CCGGCCTGTCGTCGAGCAAGCTGTGTCTGCCGTTCGCAACCTGGCGATTG
AGGAGGATAACACGCGGAAACTGGGAGCGGAGGGGGCGTGTGATGCCATT
GTGATGGTAATGAGGGCTTATCCCACCGAGGCTACTTTCCAATCGAAGGC
GTGCGCGGCAGTGGTAAACTTGGCCGGGGGAAATTCGGACAATAAGCGAA
AGCTTGGCTTGGGAGGGGCCGTTGAAGCGGTGGTGGAGGCGCTGAAAGCA
TTTCCGGCTGATGCATCAGTCACAGAGCAAGGCTTGTGGGCAACAAAGAA
CATGGCGGTGGACGCTGAAAACACTGTGTTGTTTGGAAATGTGGGAATTT
GTGAAGTGATAGTGTCGGCACTTCGTTCTTTCCAGTCGGAGCCACGGGTG
TTGATTCAGGCACTGGCAGCGGCAGTTAATTGCTCGGGCGGAAATGATGA
AAATAAAAAGAGACTTGGATCATTGGGGGCTTGCCAGGAAATTGTTAAGT
CCATGCAGTCTTTCCCTGGAAACGCCACGGTGCAGTTGCAGGCTTGTTGG
TGCATCAAGAATATCAGCAATAATAGCGATGAGAACAAACGGAAGTTTGG
CCCGACAGCAGGGGAGTTGGTGGTGGCGGCACTAAGGACGTTTTCGACTG
ATGAAGGTATTCTGAGGGAGGGAAAGGCAGCTTTGAGGAATTTGAGTAAC
AACAACCCAGAAAATCGTGCGAGGATCGAGGCGTTGAACTATAAGGAGCA
CCTAGTCCGGGTGTCCCCCTTTTCGGGTTCGGGGGGGAATAAATGA

Synonyms

Publications