jgi.p|Nanoce1779_2|572058, mRNA_1427 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572058
Unique Name	mRNA_1427
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3720
Alignment location	scaffold_1:522085..525804 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572144
Track	FilteredModels2
ProteinId	572058

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:522085..525804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572058	gene_1427	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572058	mRNA_1427-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1427	CDS_1427	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:522085..525804+
coding sequence from alignment at scaffold_1:522085..525804+

mRNA sequence

>mRNA_1427 ID=mRNA_1427|Name=jgi.p|Nanoce1779_2|572058|organism=Nannochloropsis oceanica|type=mRNA|length=3720bp
CGGGGGAGTAGGGGAGGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTG
ACGTGCCCAAAGTGCATGGGTTAAAGGACGCATCTTACAAGCCCTTGACA
GGCGAGGAGCTAGAGATATGCGTGTTGCAATTGCGCTCAAAATTGTACCG
CTTGACAGAGGTGAAGACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGT
CGTCCTCCTCATCGGCGCAGCCACGACGTGACTGGGTGGAGACCGGCGTG
GGACAAGCCAAGGTACTGAAACCACTGTCGAGGAATGACAATTTCTCGGC
GCCTGCCCGGATAGTGATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCA
ATACGTTGCTGAAGGAGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCG
TTGCGGCTCACATGTTTGGATGAGAATGGAATGCCTTCTACGTTTTTGTT
CCGGTTTAAGACAACGGATGAGATGGAGCAAATGCTAGGGGAGATTGAGA
GGCAACTGGCCATTGCCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAG
GAAGCAGCCGTGGGGGAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTG
AGAGGAAATGGTTTGAGATAGGCTGGTGATGTAAAAGAGACACAAAAAGA
GTCATGAAAAAGGGAATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTA
GTAAAGTTGAAAATGTGAGAAAGGAAACGAGATGATGTTTTAGCACAGCC
AAATGCACAATTGCTTTGCACCAAATACACCCCAAAAAGACGTAGAAAGA
CGTCACAAAACACCGCACTCACCGCATACTCTCATACATATCTGGTTACA
ACCCCAGGCTTATAAGTCGATTCTTGTGGATTCACTCCCTCTATCATCAC
GAGCAGCCGTGGCCTCAATGTTCCTCCTCCGCCTTGCCCCTCGACGCCTC
CAGTCCCAGGCAGAAGCAGCCCAGCGCTGCGGCCTGGCAACCACCACAAC
AGCACCACCGTCACAAAAGGCAACGTCGCTCATCGCAGAAACCTTGGCTG
ATATGGAAGAGGAAGCGGCAGCAAAGGCCGCTGCAAGCAAAAGTCCCTTC
AACCCGACTATGCCACCCACGGGCGGTGCAGCAGAACTCAAGGCCATGGG
ACGCACGCGCCTATCCCTTGAAGAGCGAAAGCGGCGGCGACGAGCTCTCG
ATGGGCTGGGCATCGCACCCTTCGGTCAGTTTCTGAAGCAGCAGGGCCTG
GGGCTTGAACGAGCACCGACCGACACCCTCCAGCTCAACATCGGGCTGTA
TTGCAATCAAGCCTGCAACCATTGCCACGTCGAGAGCTCGCCCAAGCGCA
CCCAAGAAATGATGACCCGGGAAACCGCGGATCGTTGCCTTGATTTCTTA
CGGCGGTCCCCCTCCATTCGTACGCTGGACTTGACGGGAGGTGCCCCGGA
GCTGAATGCGCAATTCAGGCATCTAGTCACAGAGGCCACGCCTTTGGGGG
TCTCCATCATCGATCGCTGCAACCTTACAGTGTTGGAAGAGCCAGGCCAA
GAAGACTTGGCTACCTTCTTGGCCAATCATCAAGTCAAGGTGGTGGCATC
CATGCCTTGCTACGAGGAAGAAAACGTGAAGCGACAACGAGGGAGCTCGG
TCTACCACCGATCCATCGCTGGATTGAAACACTTGAACGCAGCTGGTTAC
GGTCAAGAGAGTTCTGGCCTTTGTTTGACACTGGTTTATAATCCTGTTGG
TGCGTTTTTGCCACCGGCCCAGCCACTGCTGCAAGCGAAGTATAAAGAGG
AATTAAAGGCGAGGTTTGGGATTGTGTTTAATGATCTGATTTGCATTACC
AACATGCCTATAAAAAGGTTTGCGGATCATCTATATCGGAGGGGGGAACT
GGAAAAATACATGCAATTGCTGGTGCAGAGTTTCAACCCGGGGGCGGTGG
AGGGCCTCATGTGCCGCACGCATTTGAGTGTGGGTTGGGATGGGAAGGTT
TATGATTGTGATTTTAACCAGCAGTTGGACATGGCCATGCGGAAGCAAGG
TGAAGGGATTGAGAGAGGATTGACGATACATGATGTACAGGACGCCAACG
CATTGTTGGAGATGAAGCGACCGATTTTGATGGACACGCATTGTTTTGGC
TGTACCGCAGGGGAGGGGTCTAGTTGTGGAGGGACGATAGCTGCACCAGT
AGCTGCGGCAGTAGCAGCGAACTCTTGAGCAGGGGTTCATAATACAAAAG
GCACATGCGAGTAAGAGAGGACAGCAAATCAAATCACTCAAATCAAAAAC
TAGCCGATCAAAACATTAAATCTTGATGTGGAATTTTTTGATGTGTGTGT
GTGTATGTATGTGTGTGTGTCGGTGTGTCGGTGTGTTCATCTATCGGTCG
GAAAAATGCATCGCCTTTCTCCTTAGTTTACTGACTAGACTTTAAGCGGA
TGAATTATAACATGCAAAGACCTTCTAATTCCGACTCTAAGCTTGACAAA
TACACCCATTTACCAATTGCCCACACAAAATGACGCAAACGCACAAAAAG
GCGCGCTTACTCTCTCACGTGAATACTATCTCTCGACACCCTTTCCCCCC
GTCTTTTCTTATTCTGAGCTCCGACCCTGCCTTCATAAATAATTGACTAC
CTCTTTCTTGCTTGCTTCGCCTCGCAAACAAACGTAGGTACAGGTAGTCT
CTTCTTTTGTCGTCTCTTTCACTCTTCCTCCCTCCAATCCTCCCATACTC
CCTTGCTACCTATCTTGAGATGTGAAGCGTGAACCTAGATATTCGTATGT
AAAAGTGTCTCAAATCTACCATGACTGCTTGTGTTTGGTTTCTCCATATC
TTCCTCACTCACTTGCTCCTTTTCTACCTCCTTTTCGTTCGCAAAGCAGC
ATTTCTCTTGGAGAGAAAGCGTGCGCTCAAAAAAAGACATGACACAAAAT
AGGAAAAGCTCAAATGAACTCCCGACAGGCGCGCGAAATTACACACACAC
ACACTAGACATACATATACTTAATTTCGCAGGTTCTGGTCATCCTTCGTT
CGCCCTCTCATTTCCGTGTTCCTCCAAACATGTCTGTAGACGTCTTGTGT
GTTCCATGTACACTTGCTGTTGCAGCCGGTGTAGAAGATGACGGCATCGA
TCAATCTGGTCGTGTCAATTTATTCCTGAGTTCTGATTGCATTGATTTTT
ATGGCTGCCCAGAAGAAGAGAACCGTCCTCCTTCCCTCCATCTTTCCTTC
ACCCGTATACCCGTGCGTAGTAGAGAGAAGTAGAAGAAGCCTGCAGCCCC
CCAGATAAAATGTACCCAGAGAGAGTCATTTCCTTCACTTAGTTGCGGCT
CCTCCTTTTCTTTCTTTCTCCTTCATCTATTTGTCATTCAATTATCGCCT
TCTCTATTTATTTCCCCACCTCCCTCCGTCGCTCTCTCCCTACCCTCAAC
CGACTCAACGCCTCCAACAACGAACCGGGTCGATTTCTACCTGCCATAAA
GCATCCCTCCCTCCCTGCCTCCATCCCCTCCACACTCTCCTCGATTCATT
TATTCCCCCCCGAACCCGAAAAGGGGGACACCCGGACTAGGTGCTCCTTA
TAGTTCAACGCCTCGATCCTCGCACGATTTTCTGGGTTGTTGTTACTCAA
ATTCCTCAAAGCTGCCTTTCCCTCCCTCAGAATACCTTCATCAGTCGAAA
ACGTCCTTAGTGCCGCCACC

protein sequence of jgi.p|Nanoce1779_2|572058

>mRNA_1427-protein ID=mRNA_1427-protein|Name=jgi.p|Nanoce1779_2|572058|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MHNCFAPNTPQKDVERRHKTPHSPHTLIHIWLQPQAYKSILVDSLPLSSR
AAVASMFLLRLAPRRLQSQAEAAQRCGLATTTTAPPSQKATSLIAETLAD
MEEEAAAKAAASKSPFNPTMPPTGGAAELKAMGRTRLSLEERKRRRRALD
GLGIAPFGQFLKQQGLGLERAPTDTLQLNIGLYCNQACNHCHVESSPKRT
QEMMTRETADRCLDFLRRSPSIRTLDLTGGAPELNAQFRHLVTEATPLGV
SIIDRCNLTVLEEPGQEDLATFLANHQVKVVASMPCYEEENVKRQRGSSV
YHRSIAGLKHLNAAGYGQESSGLCLTLVYNPVGAFLPPAQPLLQAKYKEE
LKARFGIVFNDLICITNMPIKRFADHLYRRGELEKYMQLLVQSFNPGAVE
GLMCRTHLSVGWDGKVYDCDFNQQLDMAMRKQGEGIERGLTIHDVQDANA
LLEMKRPILMDTHCFGCTAGEGSSCGGTIAAPVAAAVAANS*

mRNA from alignment at scaffold_1:522085..525804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1427 ID=mRNA_1427|Name=jgi.p|Nanoce1779_2|572058|organism=Nannochloropsis oceanica|type=mRNA|length=3720bp|location=Sequence derived from alignment at scaffold_1:522085..525804+ (Nannochloropsis oceanica)
CGGGGGAGTAGGGGAGGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTG
ACGTGCCCAAAGTGCATGGGTTAAAGGACGCATCTTACAAGCCCTTGACA
GGCGAGGAGCTAGAGATATGCGTGTTGCAATTGCGCTCAAAATTGTACCG
CTTGACAGAGGTGAAGACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGT
CGTCCTCCTCATCGGCGCAGCCACGACGTGACTGGGTGGAGACCGGCGTG
GGACAAGCCAAGGTACTGAAACCACTGTCGAGGAATGACAATTTCTCGGC
GCCTGCCCGGATAGTGATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCA
ATACGTTGCTGAAGGAGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCG
TTGCGGCTCACATGTTTGGATGAGAATGGAATGCCTTCTACGTTTTTGTT
CCGGTTTAAGACAACGGATGAGATGGAGCAAATGCTAGGGGAGATTGAGA
GGCAACTGGCCATTGCCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAG
GAAGCAGCCGTGGGGGAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTG
AGAGGAAATGGTTTGAGATAGGCTGGTGATGTAAAAGAGACACAAAAAGA
GTCATGAAAAAGGGAATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTA
GTAAAGTTGAAAATGTGAGAAAGGAAACGAGATGATGTTTTAGCACAGCC
AAATGCACAATTGCTTTGCACCAAATACACCCCAAAAAGACGTAGAAAGA
CGTCACAAAACACCGCACTCACCGCATACTCTCATACATATCTGGTTACA
ACCCCAGGCTTATAAGTCGATTCTTGTGGATTCACTCCCTCTATCATCAC
GAGCAGCCGTGGCCTCAATGTTCCTCCTCCGCCTTGCCCCTCGACGCCTC
CAGTCCCAGGCAGAAGCAGCCCAGCGCTGCGGCCTGGCAACCACCACAAC
AGCACCACCGTCACAAAAGGCAACGTCGCTCATCGCAGAAACCTTGGCTG
ATATGGAAGAGGAAGCGGCAGCAAAGGCCGCTGCAAGCAAAAGTCCCTTC
AACCCGACTATGCCACCCACGGGCGGTGCAGCAGAACTCAAGGCCATGGG
ACGCACGCGCCTATCCCTTGAAGAGCGAAAGCGGCGGCGACGAGCTCTCG
ATGGGCTGGGCATCGCACCCTTCGGTCAGTTTCTGAAGCAGCAGGGCCTG
GGGCTTGAACGAGCACCGACCGACACCCTCCAGCTCAACATCGGGCTGTA
TTGCAATCAAGCCTGCAACCATTGCCACGTCGAGAGCTCGCCCAAGCGCA
CCCAAGAAATGATGACCCGGGAAACCGCGGATCGTTGCCTTGATTTCTTA
CGGCGGTCCCCCTCCATTCGTACGCTGGACTTGACGGGAGGTGCCCCGGA
GCTGAATGCGCAATTCAGGCATCTAGTCACAGAGGCCACGCCTTTGGGGG
TCTCCATCATCGATCGCTGCAACCTTACAGTGTTGGAAGAGCCAGGCCAA
GAAGACTTGGCTACCTTCTTGGCCAATCATCAAGTCAAGGTGGTGGCATC
CATGCCTTGCTACGAGGAAGAAAACGTGAAGCGACAACGAGGGAGCTCGG
TCTACCACCGATCCATCGCTGGATTGAAACACTTGAACGCAGCTGGTTAC
GGTCAAGAGAGTTCTGGCCTTTGTTTGACACTGGTTTATAATCCTGTTGG
TGCGTTTTTGCCACCGGCCCAGCCACTGCTGCAAGCGAAGTATAAAGAGG
AATTAAAGGCGAGGTTTGGGATTGTGTTTAATGATCTGATTTGCATTACC
AACATGCCTATAAAAAGGTTTGCGGATCATCTATATCGGAGGGGGGAACT
GGAAAAATACATGCAATTGCTGGTGCAGAGTTTCAACCCGGGGGCGGTGG
AGGGCCTCATGTGCCGCACGCATTTGAGTGTGGGTTGGGATGGGAAGGTT
TATGATTGTGATTTTAACCAGCAGTTGGACATGGCCATGCGGAAGCAAGG
TGAAGGGATTGAGAGAGGATTGACGATACATGATGTACAGGACGCCAACG
CATTGTTGGAGATGAAGCGACCGATTTTGATGGACACGCATTGTTTTGGC
TGTACCGCAGGGGAGGGGTCTAGTTGTGGAGGGACGATAGCTGCACCAGT
AGCTGCGGCAGTAGCAGCGAACTCTTGAGCAGGGGTTCATAATACAAAAG
GCACATGCGAGTAAGAGAGGACAGCAAATCAAATCACTCAAATCAAAAAC
TAGCCGATCAAAACATTAAATCTTGATGTGGAATTTTTTGATGTGTGTGT
GTGTATGTATGTGTGTGTGTCGGTGTGTCGGTGTGTTCATCTATCGGTCG
GAAAAATGCATCGCCTTTCTCCTTAGTTTACTGACTAGACTTTAAGCGGA
TGAATTATAACATGCAAAGACCTTCTAATTCCGACTCTAAGCTTGACAAA
TACACCCATTTACCAATTGCCCACACAAAATGACGCAAACGCACAAAAAG
GCGCGCTTACTCTCTCACGTGAATACTATCTCTCGACACCCTTTCCCCCC
GTCTTTTCTTATTCTGAGCTCCGACCCTGCCTTCATAAATAATTGACTAC
CTCTTTCTTGCTTGCTTCGCCTCGCAAACAAACGTAGGTACAGGTAGTCT
CTTCTTTTGTCGTCTCTTTCACTCTTCCTCCCTCCAATCCTCCCATACTC
CCTTGCTACCTATCTTGAGATGTGAAGCGTGAACCTAGATATTCGTATGT
AAAAGTGTCTCAAATCTACCATGACTGCTTGTGTTTGGTTTCTCCATATC
TTCCTCACTCACTTGCTCCTTTTCTACCTCCTTTTCGTTCGCAAAGCAGC
ATTTCTCTTGGAGAGAAAGCGTGCGCTCAAAAAAAGACATGACACAAAAT
AGGAAAAGCTCAAATGAACTCCCGACAGGCGCGCGAAATTACACACACAC
ACACTAGACATACATATACTTAATTTCGCAGGTTCTGGTCATCCTTCGTT
CGCCCTCTCATTTCCGTGTTCCTCCAAACATGTCTGTAGACGTCTTGTGT
GTTCCATGTACACTTGCTGTTGCAGCCGGTGTAGAAGATGACGGCATCGA
TCAATCTGGTCGTGTCAATTTATTCCTGAGTTCTGATTGCATTGATTTTT
ATGGCTGCCCAGAAGAAGAGAACCGTCCTCCTTCCCTCCATCTTTCCTTC
ACCCGTATACCCGTGCGTAGTAGAGAGAAGTAGAAGAAGCCTGCAGCCCC
CCAGATAAAATGTACCCAGAGAGAGTCATTTCCTTCACTTAGTTGCGGCT
CCTCCTTTTCTTTCTTTCTCCTTCATCTATTTGTCATTCAATTATCGCCT
TCTCTATTTATTTCCCCACCTCCCTCCGTCGCTCTCTCCCTACCCTCAAC
CGACTCAACGCCTCCAACAACGAACCGGGTCGATTTCTACCTGCCATAAA
GCATCCCTCCCTCCCTGCCTCCATCCCCTCCACACTCTCCTCGATTCATT
TATTCCCCCCCGAACCCGAAAAGGGGGACACCCGGACTAGGTGCTCCTTA
TAGTTCAACGCCTCGATCCTCGCACGATTTTCTGGGTTGTTGTTACTCAA
ATTCCTCAAAGCTGCCTTTCCCTCCCTCAGAATACCTTCATCAGTCGAAA
ACGTCCTTAGTGCCGCCACC

Coding sequence (CDS) from alignment at scaffold_1:522085..525804+

>mRNA_1427 ID=mRNA_1427|Name=jgi.p|Nanoce1779_2|572058|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_1:522085..525804+ (Nannochloropsis oceanica)
ATGCACAATTGCTTTGCACCAAATACACCCCAAAAAGACGTAGAAAGACG
TCACAAAACACCGCACTCACCGCATACTCTCATACATATCTGGTTACAAC
CCCAGGCTTATAAGTCGATTCTTGTGGATTCACTCCCTCTATCATCACGA
GCAGCCGTGGCCTCAATGTTCCTCCTCCGCCTTGCCCCTCGACGCCTCCA
GTCCCAGGCAGAAGCAGCCCAGCGCTGCGGCCTGGCAACCACCACAACAG
CACCACCGTCACAAAAGGCAACGTCGCTCATCGCAGAAACCTTGGCTGAT
ATGGAAGAGGAAGCGGCAGCAAAGGCCGCTGCAAGCAAAAGTCCCTTCAA
CCCGACTATGCCACCCACGGGCGGTGCAGCAGAACTCAAGGCCATGGGAC
GCACGCGCCTATCCCTTGAAGAGCGAAAGCGGCGGCGACGAGCTCTCGAT
GGGCTGGGCATCGCACCCTTCGGTCAGTTTCTGAAGCAGCAGGGCCTGGG
GCTTGAACGAGCACCGACCGACACCCTCCAGCTCAACATCGGGCTGTATT
GCAATCAAGCCTGCAACCATTGCCACGTCGAGAGCTCGCCCAAGCGCACC
CAAGAAATGATGACCCGGGAAACCGCGGATCGTTGCCTTGATTTCTTACG
GCGGTCCCCCTCCATTCGTACGCTGGACTTGACGGGAGGTGCCCCGGAGC
TGAATGCGCAATTCAGGCATCTAGTCACAGAGGCCACGCCTTTGGGGGTC
TCCATCATCGATCGCTGCAACCTTACAGTGTTGGAAGAGCCAGGCCAAGA
AGACTTGGCTACCTTCTTGGCCAATCATCAAGTCAAGGTGGTGGCATCCA
TGCCTTGCTACGAGGAAGAAAACGTGAAGCGACAACGAGGGAGCTCGGTC
TACCACCGATCCATCGCTGGATTGAAACACTTGAACGCAGCTGGTTACGG
TCAAGAGAGTTCTGGCCTTTGTTTGACACTGGTTTATAATCCTGTTGGTG
CGTTTTTGCCACCGGCCCAGCCACTGCTGCAAGCGAAGTATAAAGAGGAA
TTAAAGGCGAGGTTTGGGATTGTGTTTAATGATCTGATTTGCATTACCAA
CATGCCTATAAAAAGGTTTGCGGATCATCTATATCGGAGGGGGGAACTGG
AAAAATACATGCAATTGCTGGTGCAGAGTTTCAACCCGGGGGCGGTGGAG
GGCCTCATGTGCCGCACGCATTTGAGTGTGGGTTGGGATGGGAAGGTTTA
TGATTGTGATTTTAACCAGCAGTTGGACATGGCCATGCGGAAGCAAGGTG
AAGGGATTGAGAGAGGATTGACGATACATGATGTACAGGACGCCAACGCA
TTGTTGGAGATGAAGCGACCGATTTTGATGGACACGCATTGTTTTGGCTG
TACCGCAGGGGAGGGGTCTAGTTGTGGAGGGACGATAGCTGCACCAGTAG
CTGCGGCAGTAGCAGCGAACTCTTGA

Synonyms

Publications