jgi.p|Nanoce1779_2|6004, mRNA_1426 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|6004
Unique Name	mRNA_1426
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1943
Alignment location	scaffold_1:520950..522892 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	6090
Track	FilteredModels2
ProteinId	6004

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:520950..522892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6004	gene_1426	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6004	mRNA_1426-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1426	CDS_1426	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:520950..522892+
coding sequence from alignment at scaffold_1:520950..522892+

mRNA sequence

>mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp
GAGCACAGTGTGTGTATGAAAGGGTTGGAGAGAGGGGAGGAATGGTGGGG
AGGTCGCCGGCGGCCCACTGACGGCCCGGGTTCGCCTAATGAATTCTTCC
ATGGTCTTGTTTTTCCCCCCACACACGTGCGTATACACACAATCGCACCA
CGCACCCATGTGAGAGGAGCATGCCCAGCCTGCAATTGTGCCCCTCTCAA
CAGGTACCTCTCCCCCTCATACATCTGACAGAGATTAGTTTTGCTGCTTC
AGCACGAGGAAGCCAGCGTTCTCCGTAGATAAGGAAAAGCAAGGCACCGC
AACCTCACACAACAATGGCAACGACCACCGGCATCAGCGACCCTGCAATT
AGGCATGAAGATCCCACGATGACTGCCGCCTCTGAGACGACGACGACAAC
GACGACGACGACAACGACGACGACCGCGACGGAAGGCAGCAGCCCTGCAC
CCGAGTCGGGCTCGGCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGG
GCCAAGAGCAAGAACGACGTTGACAACGATGATTCAAGTGAGATCGCAGA
AGAAGGCACTGTCTCGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGA
GCAAGCGGAGGATAGTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGA
GATGGGTCACCTGCAGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGAC
CGCCAATCCCTTTGCAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTA
TCGGGGGAGGTGGCGTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCT
TCCATCCTCGGGGTAAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGC
GAAGGGAGTTGACATGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGG
CGCCGGTTGGGTTTGCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCT
CCGAGTGCGGGAACTGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTC
GAAGAGGAAGCCACCCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTC
AATCACAGTTTGGTAGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGAT
GAAGAAGATGGTAGAGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGA
GGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGC
ATGGGTTAAAGGACGCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAG
ATATGCGTGTTGCAATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAA
GACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGG
CGCAGCCACGACGTGACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTA
CTGAAACCACTGTCGAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGT
GATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGG
AGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGT
TTGGATGAGAATGGAATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAAC
GGATGAGATGGAGCAAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTG
CCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGG
GAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTGAGAGGAAATGGTTTG
AGATAGGCTGGTGATGTAAAAGAGACACAAAAAGAGTCATGAAAAAGGGA
ATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTAGTAAAGTTGAAAATG
TGAGAAAGGAAACGAGATGATGTTTTAGCACAGCCAAATGCACAATTGCT
TTGCACCAAATACACCCCAAAAAGACGTAGAAAGACGTCACAA

protein sequence of jgi.p|Nanoce1779_2|6004

>mRNA_1426-protein ID=mRNA_1426-protein|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MATTTGISDPAIRHEDPTMTAASETTTTTTTTTTTTTATEGSSPAPESGS
ATKKKRGAGDDWAKSKNDVDNDDSSEIAEEGTVSGEFRRADPETLSKRRI
VKARRPPGMEGGDGSPAGSATGVEDKSVTANPFAALSLTRAKTDAIGGGG
VFGSGFPQTNAASILGVSGGGGGWGSTGAKGVDMVRPGTGPGLGSAPVGF
AAYKLNPFQSAAPSAGTGASSSSFVSSPSKRKPPSELAGASEASSQSQFG
RPAASINQGGEDEEDGRGRGGSPAGGVGEEDLEAEPNVTFDVPKVHGLKD
ASYKPLTGEELEICVLQLRSKLYRLTEVKTKDDAGGGGGASSSSSAQPRR
DWVETGVGQAKVLKPLSRNDNFSAPARIVMRREPGTSVLINTLLKEPVGV
AKHADKALRLTCLDENGMPSTFLFRFKTTDEMEQMLGEIERQLAIAAGPG
RGGGIKEEAAVGEGKKKDKANAV*

mRNA from alignment at scaffold_1:520950..522892+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_1:520950..522892+ (Nannochloropsis oceanica)
GAGCACAGTGTGTGTATGAAAGGGTTGGAGAGAGGGGAGGAATGGTGGGG
AGGTCGCCGGCGGCCCACTGACGGCCCGGGTTCGCCTAATGAATTCTTCC
ATGGTCTTGTTTTTCCCCCCACACACGTGCGTATACACACAATCGCACCA
CGCACCCATGTGAGAGGAGCATGCCCAGCCTGCAATTGTGCCCCTCTCAA
CAGGTACCTCTCCCCCTCATACATCTGACAGAGATTAGTTTTGCTGCTTC
AGCACGAGGAAGCCAGCGTTCTCCGTAGATAAGGAAAAGCAAGGCACCGC
AACCTCACACAACAATGGCAACGACCACCGGCATCAGCGACCCTGCAATT
AGGCATGAAGATCCCACGATGACTGCCGCCTCTGAGACGACGACGACAAC
GACGACGACGACAACGACGACGACCGCGACGGAAGGCAGCAGCCCTGCAC
CCGAGTCGGGCTCGGCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGG
GCCAAGAGCAAGAACGACGTTGACAACGATGATTCAAGTGAGATCGCAGA
AGAAGGCACTGTCTCGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGA
GCAAGCGGAGGATAGTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGA
GATGGGTCACCTGCAGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGAC
CGCCAATCCCTTTGCAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTA
TCGGGGGAGGTGGCGTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCT
TCCATCCTCGGGGTAAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGC
GAAGGGAGTTGACATGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGG
CGCCGGTTGGGTTTGCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCT
CCGAGTGCGGGAACTGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTC
GAAGAGGAAGCCACCCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTC
AATCACAGTTTGGTAGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGAT
GAAGAAGATGGTAGAGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGA
GGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGC
ATGGGTTAAAGGACGCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAG
ATATGCGTGTTGCAATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAA
GACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGG
CGCAGCCACGACGTGACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTA
CTGAAACCACTGTCGAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGT
GATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGG
AGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGT
TTGGATGAGAATGGAATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAAC
GGATGAGATGGAGCAAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTG
CCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGG
GAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTGAGAGGAAATGGTTTG
AGATAGGCTGGTGATGTAAAAGAGACACAAAAAGAGTCATGAAAAAGGGA
ATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTAGTAAAGTTGAAAATG
TGAGAAAGGAAACGAGATGATGTTTTAGCACAGCCAAATGCACAATTGCT
TTGCACCAAATACACCCCAAAAAGACGTAGAAAGACGTCACAA

Coding sequence (CDS) from alignment at scaffold_1:520950..522892+

>mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_1:520950..522892+ (Nannochloropsis oceanica)
ATGGCAACGACCACCGGCATCAGCGACCCTGCAATTAGGCATGAAGATCC
CACGATGACTGCCGCCTCTGAGACGACGACGACAACGACGACGACGACAA
CGACGACGACCGCGACGGAAGGCAGCAGCCCTGCACCCGAGTCGGGCTCG
GCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGGGCCAAGAGCAAGAA
CGACGTTGACAACGATGATTCAAGTGAGATCGCAGAAGAAGGCACTGTCT
CGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGAGCAAGCGGAGGATA
GTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGAGATGGGTCACCTGC
AGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGACCGCCAATCCCTTTG
CAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTATCGGGGGAGGTGGC
GTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCTTCCATCCTCGGGGT
AAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGCGAAGGGAGTTGACA
TGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGGCGCCGGTTGGGTTT
GCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCTCCGAGTGCGGGAAC
TGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTCGAAGAGGAAGCCAC
CCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTCAATCACAGTTTGGT
AGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGATGAAGAAGATGGTAG
AGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGAGGAGGATTTGGAAG
CGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGCATGGGTTAAAGGAC
GCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAGATATGCGTGTTGCA
ATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAAGACTAAAGATGATG
CGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGGCGCAGCCACGACGT
GACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTACTGAAACCACTGTC
GAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGTGATGCGGCGGGAGC
CTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGGAGCCGGTGGGGGTA
GCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGTTTGGATGAGAATGG
AATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAACGGATGAGATGGAGC
AAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTGCCGCGGGACCAGGA
AGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGGGAAGGGAAGAAGAA
GGATAAGGCCAATGCCGTCTGA

Synonyms

Publications