jgi.p|Nanoce1779_2|626765, mRNA_1425 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626765
Unique NamemRNA_1425
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1800
Alignment locationscaffold_1:519166..520965 -

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Properties
Property NameValue
TranscriptId626851
TrackFilteredModels2
ProteinId626765
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:519166..520965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626765gene_1425Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1425CDS_1425Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626765mRNA_1425-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1425 ID=mRNA_1425|Name=jgi.p|Nanoce1779_2|626765|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
TACACACACTGTGCTCACATCTCTCTATCTCCTCCCTCCACAACACGTCA
CAGGCTCCTTTTCTTCTGACTTTTCATGAGCTCCTCCGGCAAAAAACGCA
AGAGCTTCAGCGAAACTAATGGCGCCCCTGCCTCCTCCCCATCACAAAGG
ACCAATAAGGCGTTCCACCACCGCATCAAAGTAAACATCCGGCTGGCTGA
GAACGTCCCCTCGGCCGACAGCGAAAAACAAGAAACGGCCAATCCACTGG
TTGTCCCGCCCGTGCTTGTCAGCTTTCCCCACGGCCGCCCCCGGCAAGCC
GAGACCCTCACCTTCCGCTGCCGGGCCACGGACTCCAAAGGGGGGCAACG
CCGACGCCGTCTCCGCCTGGCAGGCGAGACCCCTCATGTGGCCTATTCAG
CAGAACAACCCGCCGTGGCTCACAAGAACACGGCGAAGTACATGGTGGGT
ATCTATCGGGAAAACACGCAGGAAGTAGTGCTCTACCCCGTAGAGGCCAT
CGTGGCGCTGGAGCAGAAAGTCCGCATCCGCAACGCCGCAGGCGAGCTCC
TGGGAATCGCGGCGGGAGCTGACGACGAAGAGGAATGCGGAGAAGAGGAA
GAAGAGGAAGCGGCGAGAGTATCATCGTACGCCGAGAGACGCAAGTCGTT
GGTGGACACGTTCGGGACCAAGAAAAAACGACGGGTTATGCAATCGCAGG
AAGAGAATCGGATTAGTGCCGATGCTGTGGTGGGCCTCAATGCCTTGGGT
GGGTTCCTGGCCGATTCTTTGAAAGAAGTCCAAAAGGACGCTGCGGAGGC
GAAGCAGACTCTTACCCCGGCAGAGGCCTCAAGAGCGACGTTGTTGCCTC
CCTACAACATGCAGGCACGAAGTGTGGATCAAGTTTATCTTCCTCGACGA
ATGCTGGGCGGGGAGGGGGTATGGGATAGCGTTGCACAGGAGCTTGAAGA
GCTTTTAGGTCAAGCTTCAGATGCCTTAGCCGCAACAGCGGCAGGACAAG
GAGAGGATGGGAAGGAGAGAGGGGCAGCGGGAGTGGGAGGGTCTCGTAGT
GGTACCGGTCTGGTGCGCGAGACGATATTAAAAAGGTTTGAGAATTGGCC
AGCGTTCGTCCGTCAGCTTATTGTGAGCGCCCCTTTGCCTACCCTGGATG
ATTCAATAGGAGGTGGCGGTGATGATGGTGGTGGTATGAATGGAAGGAGG
AGGGGAGATGGGGGGGTGGAGGTAGATCCGAGGAAGGAGCACATGTGTCG
CTTGTTGCTGTTGAGGCATTTGTTTGAGTTGTACCGGCTACCCCCCATGG
TGAGAGGAGGGGCGAGTAGCCTATCGATGGCTTTGGGGCTCGGAACGGTA
AACCAGACGGTGTCGGTGGTGTTGCTGGAGCATTTCTTCCAGTCTGAAGG
GGAAGGGGAGGGGGAGGGAGGAAGGGGAGGAGGTTTCGAGGAGAGGTACC
AGAGACATACACGGACAAAGGCTTTGACGGATAAATTGCTTTTGCACCTT
TTGGTGTTGTGTTTGGTGGTGGGCGGCTACCGGGTATCGGCTTCAAGGGT
GGCCCTGGATCTGAGAATGAGCGTGGGGGAGTGCACAACGTTGTTCAGGG
AGACGGGAGCGACGGTAAGGAAGGTTTATGGAGGTGCAGGTCATAGTGGA
TTTGGGGGGCAGATAGATGAGGAGAAACAAGGAGAGGGTGGAGGAGGAAG
AAAGAGGGGGAGGGGGAGTGGGGGGGGGGAGGTGATGGTGGAGTTGTTGT
TGCCGCTGAAGTTCCCAGAGGTGAAAAGGGTTATCAGGGCGAAGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|626765

>mRNA_1425-protein ID=mRNA_1425-protein|Name=jgi.p|Nanoce1779_2|626765|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MSSSGKKRKSFSETNGAPASSPSQRTNKAFHHRIKVNIRLAENVPSADSE
KQETANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAG
ETPHVAYSAEQPAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVR
IRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKK
KRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPAE
ASRATLLPPYNMQARSVDQVYLPRRMLGGEGVWDSVAQELEELLGQASDA
LAATAAGQGEDGKERGAAGVGGSRSGTGLVRETILKRFENWPAFVRQLIV
SAPLPTLDDSIGGGGDDGGGMNGRRRGDGGVEVDPRKEHMCRLLLLRHLF
ELYRLPPMVRGGASSLSMALGLGTVNQTVSVVLLEHFFQSEGEGEGEGGR
GGGFEERYQRHTRTKALTDKLLLHLLVLCLVVGGYRVSASRVALDLRMSV
GECTTLFRETGATVRKVYGGAGHSGFGGQIDEEKQGEGGGGRKRGRGSGG
GEVMVELLLPLKFPEVKRVIRAKK*
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mRNA from alignment at scaffold_1:519166..520965-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1425 ID=mRNA_1425|Name=jgi.p|Nanoce1779_2|626765|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at scaffold_1:519166..520965- (Nannochloropsis oceanica)
TACACACACTGTGCTCACATCTCTCTATCTCCTCCCTCCACAACACGTCA
CAGGCTCCTTTTCTTCTGACTTTTCATGAGCTCCTCCGGCAAAAAACGCA
AGAGCTTCAGCGAAACTAATGGCGCCCCTGCCTCCTCCCCATCACAAAGG
ACCAATAAGGCGTTCCACCACCGCATCAAAGTAAACATCCGGCTGGCTGA
GAACGTCCCCTCGGCCGACAGCGAAAAACAAGAAACGGCCAATCCACTGG
TTGTCCCGCCCGTGCTTGTCAGCTTTCCCCACGGCCGCCCCCGGCAAGCC
GAGACCCTCACCTTCCGCTGCCGGGCCACGGACTCCAAAGGGGGGCAACG
CCGACGCCGTCTCCGCCTGGCAGGCGAGACCCCTCATGTGGCCTATTCAG
CAGAACAACCCGCCGTGGCTCACAAGAACACGGCGAAGTACATGGTGGGT
ATCTATCGGGAAAACACGCAGGAAGTAGTGCTCTACCCCGTAGAGGCCAT
CGTGGCGCTGGAGCAGAAAGTCCGCATCCGCAACGCCGCAGGCGAGCTCC
TGGGAATCGCGGCGGGAGCTGACGACGAAGAGGAATGCGGAGAAGAGGAA
GAAGAGGAAGCGGCGAGAGTATCATCGTACGCCGAGAGACGCAAGTCGTT
GGTGGACACGTTCGGGACCAAGAAAAAACGACGGGTTATGCAATCGCAGG
AAGAGAATCGGATTAGTGCCGATGCTGTGGTGGGCCTCAATGCCTTGGGT
GGGTTCCTGGCCGATTCTTTGAAAGAAGTCCAAAAGGACGCTGCGGAGGC
GAAGCAGACTCTTACCCCGGCAGAGGCCTCAAGAGCGACGTTGTTGCCTC
CCTACAACATGCAGGCACGAAGTGTGGATCAAGTTTATCTTCCTCGACGA
ATGCTGGGCGGGGAGGGGGTATGGGATAGCGTTGCACAGGAGCTTGAAGA
GCTTTTAGGTCAAGCTTCAGATGCCTTAGCCGCAACAGCGGCAGGACAAG
GAGAGGATGGGAAGGAGAGAGGGGCAGCGGGAGTGGGAGGGTCTCGTAGT
GGTACCGGTCTGGTGCGCGAGACGATATTAAAAAGGTTTGAGAATTGGCC
AGCGTTCGTCCGTCAGCTTATTGTGAGCGCCCCTTTGCCTACCCTGGATG
ATTCAATAGGAGGTGGCGGTGATGATGGTGGTGGTATGAATGGAAGGAGG
AGGGGAGATGGGGGGGTGGAGGTAGATCCGAGGAAGGAGCACATGTGTCG
CTTGTTGCTGTTGAGGCATTTGTTTGAGTTGTACCGGCTACCCCCCATGG
TGAGAGGAGGGGCGAGTAGCCTATCGATGGCTTTGGGGCTCGGAACGGTA
AACCAGACGGTGTCGGTGGTGTTGCTGGAGCATTTCTTCCAGTCTGAAGG
GGAAGGGGAGGGGGAGGGAGGAAGGGGAGGAGGTTTCGAGGAGAGGTACC
AGAGACATACACGGACAAAGGCTTTGACGGATAAATTGCTTTTGCACCTT
TTGGTGTTGTGTTTGGTGGTGGGCGGCTACCGGGTATCGGCTTCAAGGGT
GGCCCTGGATCTGAGAATGAGCGTGGGGGAGTGCACAACGTTGTTCAGGG
AGACGGGAGCGACGGTAAGGAAGGTTTATGGAGGTGCAGGTCATAGTGGA
TTTGGGGGGCAGATAGATGAGGAGAAACAAGGAGAGGGTGGAGGAGGAAG
AAAGAGGGGGAGGGGGAGTGGGGGGGGGGAGGTGATGGTGGAGTTGTTGT
TGCCGCTGAAGTTCCCAGAGGTGAAAAGGGTTATCAGGGCGAAGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_1:519166..520965-

>mRNA_1425 ID=mRNA_1425|Name=jgi.p|Nanoce1779_2|626765|organism=Nannochloropsis oceanica|type=CDS|length=1725bp|location=Sequence derived from alignment at scaffold_1:519166..520965- (Nannochloropsis oceanica)
ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC
CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA
TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA
AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT
TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG
CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC
GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA
GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG
TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC
ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA
CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT
CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA
AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC
TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG
AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG
GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACATGCAGGCACGAAGTGT
GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG
ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC
TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC
AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA
TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG
AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA
TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG
ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT
GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC
GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC
TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG
GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT
GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG
GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG
GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT
TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA
AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG
GGGGAGGTGATGGTGGAGTTGTTGTTGCCGCTGAAGTTCCCAGAGGTGAA
AAGGGTTATCAGGGCGAAGAAGTAG
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Synonyms
Publications